BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34650.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321182 jgi|Araly1|321182|fgenesh1_pm.C_scaffold_4001239 2069 0.0
> Ahg321182 jgi|Araly1|321182|fgenesh1_pm.C_scaffold_4001239
Length=1326
Score = 2069 bits (1120), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 232 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 60
Query 292 GGAACAGAGAGTTGCAGCAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTC-A--A-- 346
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 61 GGAACAGAGAGTTGCAGTAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTCAACCACC 120
Query 347 -C---TATCCCCGAAGAAGAAAGCTTCCTTTCTCTCAAACCTCACCGATCCTCAGATTTC 402
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCGATTATCCCCGAAGAAGAAAGCTTCCTATCTCTCAAACCTCACCGATCCTCAGATTTC 180
Query 403 GCTTACGCAGAGATCCGAAGACGaaaaaaaCAAGGCCTAACCTTCCGAGATTTTCGCCTC 462
|||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct 181 GCTTACGCAGAGATCCGACGACGAAAAAAACACGGTCTAACTTTCCGAGATTTTCGCCTC 240
Query 463 ATGCGTCGTATCGGCGCCGGCGACATCGGAACAGTTTACTTATGCCGTCTAGCCGGAGAC 522
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 ATGCGTCGTATCGGCGCCGGAGACATCGGAACAGTTTACTTATGTCGTCTCGCCGGAGAC 300
Query 523 GAAGAAGAGAGCCGGAGCTCGTATTTTGCGATGAAAGTTGTGGATAAAGAAGCTCTTGCG 582
||||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||
Sbjct 301 GAAGAAGAGAGCCGGAGTTCGTATTTCGCTATGAAAGTCGTGGATAAAGAAGCGCTTGCG 360
Query 583 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATTTTGAAAATGCTTGACCAT 642
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATCTTGAAAATGCTTGACCAT 420
Query 643 CCATTTTTGCCGACTCTTTACGCTGAGTTTGAAGCCTCACATTTCTCTTGCATCGTTATG 702
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CCTTTTTTGCCGACCCTTTACGCTGAGTTTGAAGCGTCACATTTCTCTTGCATCGTTATG 480
Query 703 GAATATTGCTCCGGTGGTGATTTACACTCTCTCCGTCATAGACAACCTCA-CCGGCGATT 761
|| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||| ||||
Sbjct 481 GAGTATTGCTCCGGCGGTGATTTACACTCTCTCCGTCATAGACAGCCT-ACCCGGAGATT 539
Query 762 CTCCCTCTCTTCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATCTACA 821
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TTCCCTCTCATCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATTTACA 599
Query 822 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCCGACGG 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCGGACGG 659
Query 882 TCACATTATGCTCTCTGACTTTGACCTCT-CTCTATGCTCCGACTCAATCGCAGCCGTTG 940
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 660 TCACATTATGCTCTCGGACTTTGACCTCTCCT-TATGCTCCGACTCAATCGCAGCCGTTG 718
Query 941 AATCTTCCTCGTCTTCGCCGGAGAATCAACAACTCCGTTCACCGCGACGATTCACTCGTC 1000
||||| |||| || |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 719 AATCTACCTCATCGTCGCCGGAGAATCACCAACTCCGTTCACCGCGACGACTCACTCGTC 778
Query 1001 TCGCTAGACTTTTCCAACGAGTCTTGCGGTCTAAAAAGGTTCAGACTTTAGAACCAACCC 1060
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 779 TGGCTAGACTTTTCCACCGAGTCATGCGGTCTAAAAAGGTTCAGACTTTAGAACCAAACC 838
Query 1061 GTCTCTTTGTTGCTGAACCGGTTACTGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAAT 1120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 839 GTCTCTTTGTTGCTGAACCGGTTACCGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAGT 898
Query 1121 ACGTGGCACCAGAAGTTGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 1180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGTGGCACCAGAAGTAGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 958
Query 1181 TTGGAGTGTTTCTCTACGAGATGATATATGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 TTGGAGTGTTTCTCTACGAGATGATATACGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1018
Query 1241 ACGTCATTCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACGTCATCCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1078
Query 1301 CTATGTTTGAGCTTCATGCGCGGAATTTGATTTCCGGGTTGCTTAACAAAGATCCGACTA 1360
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 CTATGTTTGAGCTTCACGCGCGGAATTTGATTTCCGGGTTGCTTACCAAAGATCCGACTA 1138
Query 1361 AAAGACTTGGGTCACGGCGAGGTGCGGCGGAGGTTAAAGTGCATCCTTTTTTCAAAGGTC 1420
||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1139 AAAGACTCGGGTCTCGGCGTGGTGCGGCGGAGGTTAAAGTACATCCTTTTTTCAAAGGTC 1198
Query 1421 TAAACTTTGCGCTCATTCGTACGCTTACTCCGCCGGAGATTCCTTCTTCCGTCGTCAAGA 1480
|||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1199 TAAATTTTGCGCTCATACGTACACTTACTCCGCCGGAGATTCCTTCGTCCGTCGTCAAGA 1258
Query 1481 AGCCGATGAAATCGGCGACGTTTAGTGGTAGAAGTAGTAACAAACCAGCGGCGTTCGATT 1540
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1259 AGCCGATGAAATCGGCGACGTTCGGTGGTAGGAGTAGTAACAAACCAGCGGCGTTCGATT 1318
Query 1541 ACTTTTGA 1548
||||||||
Sbjct 1319 ACTTTTGA 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5