BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34655.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949849 jgi|Araly1|949849|scaffold_801736.1 279 2e-74
> Ahg949849 jgi|Araly1|949849|scaffold_801736.1
Length=251
Score = 279 bits (151), Expect = 2e-74
Identities = 219/250 (88%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 190 TTTGAATGGTTCTTAGATGGCTTATGTTGTTTTTGTGGGT-TG--GTCTCTGTTGCTAGT 246
||||| | ||||||||||||||| ||| |||||||||||| || |||||||||||||||
Sbjct 5 TTTGATTTGTTCTTAGATGGCTTCTGTCGTTTTTGTGGGTATGCCGTCTCTGTTGCTAGT 64
Query 247 AGCGCCTCTTGATCCGGTC----ATGTTTTAACCTTATTCTCGTTTAGCCTTTTACCAGG 302
||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||| |
Sbjct 65 AGCGCCTTTTGATCCGGTCTTTTGTGTTTTAGCCTTCGTCTCGTTTAGCCTCTTACCA-G 123
Query 303 CT-TGGTGGTTGCTTTCGTTTCTGTCCGGTTCGATCTCCTCCCGTTTTTGTTTTTCGGTG 361
| ||||||||||||| | ||||||||||||||||||| | || ||| | || |||||||
Sbjct 124 ATGTGGTGGTTGCTTTAGATTCTGTCCGGTTCGATCTCTTGCCATTTATCTTGTTCGGTG 183
Query 362 TGGTCCGGATTGATTTGGTTCTCTCCTTGTCTTTACTCTAAAGATCTGATCGAGATCTCA 421
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 184 TGGTCCGGATTGATTTGG-T-TCTCCTTGTCTCTACTCTAAAGATCTGATCGAGATCTCA 241
Query 422 TCTGTTCATT 431
||||||||||
Sbjct 242 TCTGTTCATT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5