BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34655.1 Length=910 Score E Sequences producing significant alignments: (Bits) Value Ahg949849 jgi|Araly1|949849|scaffold_801736.1 279 2e-74 > Ahg949849 jgi|Araly1|949849|scaffold_801736.1 Length=251 Score = 279 bits (151), Expect = 2e-74 Identities = 219/250 (88%), Gaps = 11/250 (4%) Strand=Plus/Plus Query 190 TTTGAATGGTTCTTAGATGGCTTATGTTGTTTTTGTGGGT-TG--GTCTCTGTTGCTAGT 246 ||||| | ||||||||||||||| ||| |||||||||||| || ||||||||||||||| Sbjct 5 TTTGATTTGTTCTTAGATGGCTTCTGTCGTTTTTGTGGGTATGCCGTCTCTGTTGCTAGT 64 Query 247 AGCGCCTCTTGATCCGGTC----ATGTTTTAACCTTATTCTCGTTTAGCCTTTTACCAGG 302 ||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 65 AGCGCCTTTTGATCCGGTCTTTTGTGTTTTAGCCTTCGTCTCGTTTAGCCTCTTACCA-G 123 Query 303 CT-TGGTGGTTGCTTTCGTTTCTGTCCGGTTCGATCTCCTCCCGTTTTTGTTTTTCGGTG 361 | ||||||||||||| | ||||||||||||||||||| | || ||| | || ||||||| Sbjct 124 ATGTGGTGGTTGCTTTAGATTCTGTCCGGTTCGATCTCTTGCCATTTATCTTGTTCGGTG 183 Query 362 TGGTCCGGATTGATTTGGTTCTCTCCTTGTCTTTACTCTAAAGATCTGATCGAGATCTCA 421 |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 184 TGGTCCGGATTGATTTGG-T-TCTCCTTGTCTCTACTCTAAAGATCTGATCGAGATCTCA 241 Query 422 TCTGTTCATT 431 |||||||||| Sbjct 242 TCTGTTCATT 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33738781545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5