BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34690.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482433 jgi|Araly1|482433|fgenesh2_kg.4__1493__AT2G34690.1 1116 0.0
Ahg915413 jgi|Araly1|915413|Al_scaffold_0008_164 220 1e-56
> Ahg482433 jgi|Araly1|482433|fgenesh2_kg.4__1493__AT2G34690.1
Length=810
Score = 1116 bits (604), Expect = 0.0
Identities = 715/765 (93%), Gaps = 22/765 (3%)
Strand=Plus/Plus
Query 93 gagagagagaagg-a-gagagaTCTTCCATGGCGGATTCGGAAGCAGATAAGCCACTGAG 150
||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 45 GAGAGAGAG-AGGAAGGAGAGATCTTCCATGGCGGATTCGGACGCAGATAAGCCACTGAG 103
Query 151 AAAAATCTCAGCCGCTTTCAAAAAACTAGCAATCATCGTGAATTCACCGAATCCGGAAGT 210
|||||||||| ||||||||||| ||||||| ||||||||||||| |||| |||||||||
Sbjct 104 AAAAATCTCAACCGCTTTCAAAGAACTAGCGGTCATCGTGAATTCGCCGAGTCCGGAAGT 163
Query 211 TCCTGTAACGCAATTCTCTCACGCTTGCTCTCTGGTCTCGCCTCTCTTTGGTTGCCTTGG 270
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 164 TCCTGTAGCGCAATTCTCTCACGCTTGCTCTCTGGTCTCTCCTCTCTTTGGTTGCCTTGG 223
Query 271 AATAGCTTTTAAGTTTGCGGAAATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AATAGCTTTTAAGTTTGCGGAAATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGC 283
Query 331 GTCGAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCAGATTGTGT 390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 284 GTCGAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCTGATTGTGT 343
Query 391 AAGGAAAGCTGGTAGTCATACGAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGT 450
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 344 AAGGAAAGCTGGTAGTCATACTAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGT 403
Query 451 CAAAGTTCTCTTTGAACAGATCATAGCTTCCGAAGGAGATAACTCCTTGAAGGATCCAGC 510
||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 404 CAAGGTTCTCTTTGAACAGATCATAGCTTCCGAGGGAGATAACTCTTTGAAAGATCCAGC 463
Query 511 AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCATGGATGGGCTATACGGAAAGCTGT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCATGGATGGGCTATACGGAAAGCTGT 523
Query 571 TTCTCTTGGGATGTATGCTCTTCCCACAAGGGCTCACCTACTTAATATGCTCAAAGAGGA 630
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 524 TTCTCTTGGGATGTACGCTCTTCCCACAAGGGCTCACCTACTTAATTTGCTCAAAGAGGA 583
Query 631 TGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCATTAATCAC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCATTAATCAC 643
Query 691 GTATCTTGATAATCTATTCCTCTCCAAGCAACTCGGTATTGATTGGTGAAGAGCCTGaaa 750
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GTATCTTAATAATCTATTCCTCTCCAAGCAACTCGGTATTGATTGGTGAAGAGCCTGAAA 703
Query 751 aaaaGGCATAACTATTGTTACTCTTTAGACAAAATAACCTATGTTCTCACATCAAGCTAT 810
| | |||| |||| | ||||||||||||| || | | || | | | | ||
Sbjct 704 AGACTT-ATAATTATTATCACTCTTTAGACAACATCA---A-GT-C--A--T---G-TA- 748
Query 811 GTAATGTCATAACAACAGCGACGAAATACATTG-GAATAAATTGA 854
| |||||||||||||||||||||||||||| |||||||||||
Sbjct 749 --A-TGTCATAACAACAGCGACGAAATACATTATGAATAAATTGA 790
Score = 78.7 bits (42), Expect = 8e-14
Identities = 45/46 (98%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 1 TCTTGCAGCAAAGTAGATTCCGCGGCAAATCACAGAACACCAATCG 46
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTTGCAGCAAAGTAGATTCCGCGGCAAATCACA-AACACCAATCG 45
> Ahg915413 jgi|Araly1|915413|Al_scaffold_0008_164
Length=600
Score = 220 bits (119), Expect = 1e-56
Identities = 446/600 (74%), Gaps = 38/600 (6%)
Strand=Plus/Plus
Query 159 CAGCCGCTTTCAAAAAACTAGCAATCATCGTGAATTCACCGAATCCGGAAGT-TCCTG-T 216
||| ||||||||| || | || ||||||||| |||||||| |||||| || | ||| |
Sbjct 20 CAGACGCTTTCAAGGAATTGGCGGTCATCGTGAGTTCACCGAGTCCGGACGTGT-CTGTT 78
Query 217 AACGCAATTCTCTCACGCTTGCTCTCTGGTCTCG-CCTCTCTTTGGTTG-CCTTGGAATA 274
|| ||| ||| || ||||||| ||||| ||||| | || ||||| || ||||| ||||
Sbjct 79 AA-GCAGTTCGCTAACGCTTGTTCTCTCTTCTCGAAC-CTATTTGG-TGTCCTTGAAATA 135
Query 275 GCTTTTAAGTTTGCGGAA-ATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGCGTC 333
|| || ||||||| || | ||||| |||||||||||| ||||||||| | ||| ||
Sbjct 136 GCCTTCAAGTTTG-TCAAGACAGACTACGTTGCCAAGGTTAATGATCTTGCCAAGGCATC 194
Query 334 GAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCAGATTGTGTAAG 393
||| || ||||||||||||| ||||||| | ||| ||||||| |||||| | | ||
Sbjct 195 GAGCTCAATATCGACATTAGAGGTAATGGTTGACGAAGATATCAAGGCAGGCCGCGCAAA 254
Query 394 GAAAGCTGGTAGTCATACGAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGTCAA 453
||| ||||||||||||| ||||||||||| | |||||||||||||| ||| |||
Sbjct 255 AAAACCTGGTAGTCATACAAGAAACCTTTTAAAAACAAAGCGTGGTCTTGAAATGATCAG 314
Query 454 AGTTCTCTTTGAACAGATCATAGCTTCCGAA-G-GAGATAACTCCTTGAAGGATCCAGC- 510
||||| || ||| |||| ||||| || || | | ||| |||| | |||||| ||||
Sbjct 315 GGTTCTATTCGAAGAGATAATAGCAACC-AACGCTA-ATAGCTCCCTAAAGGATGCAGCG 372
Query 511 AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCAT-GGATGGGCTATAC-GGAAAGCT 568
|| ||| |||| | ||||||| ||| |||||| || | ||| | | || || ||
Sbjct 373 TAC-AAGGCTTACAATAAAGTGTTAGCTAAGCACCATGGGCT-TGCTCTTCAGG-AATCT 429
Query 569 G-TTTCTCTTGGGAT-GTATGCTCTTCCCACAAGGGCTCACCTACT-TAATATGCTCAAA 625
| | | || || | || |||| ||| |||||| | |||| | ||| ||||
Sbjct 430 GCTGAGAC-AGGAATGGAAT-CTCTCCCCTCAAGGGGACTGGTACTGT-GCATGATCAAT 486
Query 626 G-AGGATGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCATT 684
| | | |||| | |||||||||||||||||||||||||||| | | ||||| |||| |
Sbjct 487 GAAACA-GAGGAGTCGGCTAAGATACATATGCAAAGCTATGTTACTGCATCGATACCAGT 545
Query 685 AA-T-CACGTATCTTGAT-AATCTATTCCT-CTCCAAGCAAC-TCGGTATTGATTGGTGA 739
|| | || ||| ||||| || || || | ||||||| ||| | |||||||||||||||
Sbjct 546 AACTGCA--TATGTTGATCAA-CTCTTA-TGCTCCAAG-AACCTTGGTATTGATTGGTGA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5