BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34700.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482434 jgi|Araly1|482434|fgenesh2_kg.4__1494__AT2G34700.1 979 0.0
Ahg497526 jgi|Araly1|497526|fgenesh2_kg.731__1__AT2G34700.1 929 0.0
> Ahg482434 jgi|Araly1|482434|fgenesh2_kg.4__1494__AT2G34700.1
Length=722
Score = 979 bits (530), Expect = 0.0
Identities = 664/725 (92%), Gaps = 24/725 (3%)
Strand=Plus/Plus
Query 2 TCTATCTTTTTCACTAACAAAGAACAAAAATGGGTCTGGTAACAAAAGCTCTCAAATATC 61
||| ||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1 TCTCTCTTTCTCACTAACAAAGAACAAAAATGGTTTTGGTAATAAAAGCTCTCAAATATC 60
Query 62 TCTTACTCCTTTCTATTTCCTTGACTTTCATCTACACCAATGCAGTTTCATCCGCTTCTC 121
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 61 TCTTACTCCTTTCTATCTCCTTGACTTTCATCTACACCAATGAAGTGTCATCCACTTCTC 120
Query 122 C---AATGACTCCACCGTCATCGCCGGCT-AAGATGAGCAGGAGACTTGTGGCAGTTGAA 177
| | |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||
Sbjct 121 CGGTGACGACTCCACCGTCTTCGCCGG-TGAAGATGAGCCGGAGACTTGTGGCAGTTGAA 179
Query 178 GGCATGGTTTATTGCAAGTCATGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCT 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCATGGTTTATTGCAAGTCTTGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCT 239
Query 238 -C-C-T------CT-T-C--AAGGAGCGACCGTAAAGCTTGCATGCAACAACACAAAGAG 284
| | | || | | |||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CCTCTTCAAGCACTATGCTTAAGGAGCGACGGTAAAGCTTGCATGCAACAACACAAAGAG 299
Query 285 AGGTGTGACAATGGAGACAAAAACAGACAAAAACGGATACTTCTTCATGCTAGCCCCaaa 344
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 300 AGGTGTGACAATGGAGAC-AAAACAGACAAAAACGGATACTTCTTCATGTTAGCCCCCAA 358
Query 345 aaaaCTCACCACCTACGCTTTCCACACGTGCCGGGCTTGGCCTACGAATCCTGGACCCAC 404
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 359 AAAACTCACGACCTACGCTTTCCACACGTGCCGGGCTTGGCCCACGAATCCCGGACCCAC 418
Query 405 GACTGCAACGATGACATGCACCGTGCCGTCAAAGCTCAACAATGGAATAACCGGTGCTAT 464
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 419 GACTGCAACGATGACATGCACCGTCCCGTCAAAGCTCAACAATGGAATCACTGGTGCTAT 478
Query 465 GCTTAAGCCTTCTAAGACAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGG 524
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTTAAGCCTTCTAAAACAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGG 538
Query 525 TCCCTTCGCGTTTGAGCCTGCCTGTGCTCTTTGAAGACTATACTTTCGTTTTATGTATTT 584
||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||
Sbjct 539 TCCCTTCGCGTTTGAGCCTGCCTGTACTCGTTGAAGACTAGAATTTCGTTTTATGTATTT 598
Query 585 GGTGTGTGCTTGATTGTTATAATGATGATCACTA----GTGATTTTAATGTTCTGTCTTG 640
| |||||| ||||||||||||||||||||||||| ||| |||||||| | |||||||
Sbjct 599 G-TGTGTGGTTGATTGTTATAATGATGATCACTATCTAGTGTTTTTAATGATGTGTCTTG 657
Query 641 TTTGTTTTCTTGGTACGTTTCCATTTGAAATTTGTGTGTTTTGACATTATAAGATCGTTA 700
||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||
Sbjct 658 TTTGTTTTCTTGGTACGTTTCTATTTAAAATTTGTGTGTGTTGACATTTTAAGATCGTTA 717
Query 701 GTGTG 705
||||
Sbjct 718 CTGTG 722
> Ahg497526 jgi|Araly1|497526|fgenesh2_kg.731__1__AT2G34700.1
Length=612
Score = 929 bits (503), Expect = 0.0
Identities = 578/614 (94%), Gaps = 6/614 (1%)
Strand=Plus/Plus
Query 6 TCTTTTTCACTAACAAAGAACAAAAATGGGTCTGGTAACAAAAGCTCTCAAATATCTCTT 65
||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 1 TCTTTCTCACTAACAAAGAACAAAAATGGTTTTGGTAATAAAAGCTCTCAAATATCTCTT 60
Query 66 ACTCCTTTCTATTTCCTTGACTTTCATCTACACCAATGCAGTTTCATCCGCTTCTCC--- 122
|||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 61 ACTCCTTTCTATCTCCTTGACTTTCATCTATACCAATGAAGTGTCATCCGCTTCTCCGGT 120
Query 123 AATGACTCCACCGTCATCGCCGGCT-AAGATGAGCAGGAGACTTGTGGCAGTTGAAGGCA 181
| |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 121 GACGACTCCACCGTCTTCGCCGG-TGAAGATGAGCCGGAGACTTGTGGCAGTTGAAGGCA 179
Query 182 TGGTTTATTGCAAGTCATGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCTCCTC 241
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGGTTTATTGCAAGTCTTGCAAGTATTCCGGCGTCGATAATCTCTTGGAAGCATCTCCTC 239
Query 242 TTCAAGGAGCGACCGTAAAGCTTGCATGCAACAACACAAAGAGAGGTGTGACAATGGAGA 301
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCAAGGAGCGACGGTAAAGCTTGCATGCAACAACACAAAGAGAGGTGTGACAATGGAGA 299
Query 302 CAAAAACAGACAAAAACGGATACTTCTTCATGCTAGCCCCaaaaaaaCTCACCACCTACG 361
||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||
Sbjct 300 CAAAAACAGACAAAAACGGATACTTTTTCATGTTAGCCCCCAAAAAACTCACGACCTACG 359
Query 362 CTTTCCACACGTGCCGGGCTTGGCCTACGAATCCTGGACCCACGACTGCAACGATGACAT 421
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 360 CTTTCCACACGTGCCGGGCTTGGCCCACGAATCCCGGACCCACGACTGCAACGATGACAT 419
Query 422 GCACCGTGCCGTCAAAGCTCAACAATGGAATAACCGGTGCTATGCTTAAGCCTTCTAAGA 481
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 420 GCACCGTCCCGTCAAAGCTCAACAATGGAATCACTGGTGCTATGCTTAAGCCTTCTAAAA 479
Query 482 CAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGGTCCCTTCGCGTTTGAGC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGGTCCCTTCGCGTTTGAGC 539
Query 542 CTGCCTGTGCTCTTTGAAGACTATACTTTCGTTTTATGTATTTGGTGTGTGCTTGATTGT 601
|||||||| ||| |||||||||| | |||||||||||||||||| |||||| ||||||||
Sbjct 540 CTGCCTGTACTCGTTGAAGACTAGAATTTCGTTTTATGTATTTG-TGTGTGGTTGATTGT 598
Query 602 TATAATGATGATCA 615
||||||||||||||
Sbjct 599 TATAATGATGATCA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5