BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34730.1
Length=2759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482437 jgi|Araly1|482437|fgenesh2_kg.4__1497__AT2G34730.1 3895 0.0
> Ahg482437 jgi|Araly1|482437|fgenesh2_kg.4__1497__AT2G34730.1
Length=2691
Score = 3895 bits (2109), Expect = 0.0
Identities = 2510/2698 (93%), Gaps = 49/2698 (2%)
Strand=Plus/Plus
Query 104 ATGGAGGAAGAGGTCGTGAAGTCTGAGAATGGTAGTTTAGAGTTTCATGATGACACTTTA 163
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAAGAGGTTGTCATGTCTGAGAATGGTAGTTTAGAGTTTCATGATGACACTTTA 60
Query 164 TCATCATCACTCCAGGTTAATGGTGTTCTTAAAGAGAACGAGAATCCGGATGTTGATTTT 223
|||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCATCATCAGTTCAGATTAATGGTGTTCTTAAAGAGAATGAGAATCCGGATGTTGATTTT 120
Query 224 CTTGAGGATTTAGATTCTTACTGGGAGGACATAAATGATAGGTTAACTATCTCACGAGTG 283
|||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||
Sbjct 121 CTTGAGGATTTAGATTCTTACTGGGAAGATATAAATGATCGGTTGACTATCTCACGAGTC 180
Query 284 GTGAGTGATTCGATTATAAGGGGAATGGTAACTGCTATTGAGTCTGATGCTGCTGAGAAG 343
||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||
Sbjct 181 GTGAGTGATTCGATTATAAGGGGAATGATTACTGCAATTGAGTCTGAGGCTGCTGAGAAG 240
Query 344 ATAGCTCAGAAAGATCTTGAATTGTCAAAGATTAGGGAGACTTTGCTTCTGTACCATGTT 403
|||||||||||||| ||||| ||||| | |||||||||||| |||||| ||||||||||
Sbjct 241 ATAGCTCAGAAAGACCTTGAGTTGTCGAGGATTAGGGAGACATTGCTTTTGTACCATGTG 300
Query 404 GGTTCTGAAGAGAATGAATCCTCTGAGTCCCGTTTGATTCATGATGA-A---C-T-T--- 454
||||||||||| ||||||||||||||||| ||||||| |||||| | | | | |
Sbjct 301 GGTTCTGAAGAAAATGAATCCTCTGAGTCTTGTTTGATGCATGATAATAAGGCGTCTTTG 360
Query 455 -AC--TCAAG--GATCTT-C----G-A-------GCAGTCTTAAAAAGAAA-GCGAGGAA 495
|| ||||| || ||| | | | ||||||||||||| || ||||||||
Sbjct 361 GACACTCAAGATGAACTTACTCAAGGATCTTTAAGCAGTCTTAAAAA-AACCGCGAGGAA 419
Query 496 ACAGTTGTTGATGCTCGTTGAAGAACTCACCAATTTGAGAGAGTATATTCACATCAATGG 555
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 ACAGTTGTTGATGCTCGTTGAAGAGCTCACCAATTTGAGAGAGTATATTCACATCAATGG 479
Query 556 ATCAGGTGCCACTGTGGATGATTCATTGGGTTTAGACAGCAGTCCGCATGAGACCAGGTC 615
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 ATCAGGCGCCACTGTCGATGATTCATTGGGTTTAGACAGCAGTCTGCATGAGACCAGGTC 539
Query 616 CAAAACTGTCGATAAAATGCTTGATTCTTTGAAGAGCATTCTAGAGACTGTGTTGAAGCG 675
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CAAAACTGTCGATAAAATGCTTGATTCCTTGAAGAGCATTCTAGAGACTGTGTTGAAGCG 599
Query 676 GAAGAATGATATGGAACTTCCCTCCTCGTGGCAGCAGGAGCATGATTTTCAAAAAGAAAT 735
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GAAGAATGATATGGAACTTCCCTCCTCGTGGCAGCAGGAGCATGATTGTCAAAAAGAAAT 659
Query 736 TGAGTCTGCAGTGGTTACTAGTGTTCTTCGGAGTCTCAAGGATGAGTATGAACAGAGATT 795
||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGTCTGCGGTGGTGACTAGTTTTGTTCGGAGTCTCAAGGATGAGTATGAACAGAGATT 719
Query 796 GTTGGACCAAAAAGCTGAATTTGGTGGTAATAGAAGTCTCATACTTGGAAATATCAAAGA 855
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 720 GTTGGACCAAAAAGCTGAATTTGGTGGTACTAGAAGTCTCATACTTGGAAATGTCAAAGA 779
Query 856 GATTACTGGTCTGCGCCAGGAACTAGAGGCGATTCGTAAATCGTTTTTGGATCATGAAAA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATTACTGGTCTGCGCCAGGAACTAGAGGCGATTCGTAAATCGTTTTTGGATCATGAAAA 839
Query 916 CGGGGACGAGGCAGGAGAGGTAGGGGATCGGAAAAGAGTGGAGCAATTACACCGCAAGAT 975
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 840 TGGGGACGAGGCAGGGGAGGTAGGGGACCGGAAAAGAGTGGAGCAATTGCACCGCAAGAT 899
Query 976 GTCAGGAAGCCTTAATTCAGTTTCTTCAGTTTGGGAAAATGGTAAGCATGAAGAGAGTTC 1035
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCGGGAAGCCTTAATTCAGTTTCTTCAGTTTGGGAAAATGGTAAGCATGAAGAGAGTTC 959
Query 1036 TACTGGCTTAATACCTGAGCATAACGAGACCTTAAGACACATGTCTCCTGATGAGAT-GA 1094
||||||||||| |||||| |||| ||| | |||| ||||||||| | |||| | | ||
Sbjct 960 CACTGGCTTAATGCCTGAGTATAATGAGGCTTTAAAACACATGTCACGAGATG-GTTTGA 1018
Query 1095 TCAATCACTTTAAGATCGAGATGAATAAAATGAAAAGAGACCATGATTATAAAATACAAG 1154
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 TCAGTCACTTTAAGATCGAGATGAATAAAATGAAAAGAGACCATGATTATGAAATACAAG 1078
Query 1155 AGTTGACAGAGCAATGCTTTACCTTTAAGCGCAAGTATCTGAATTTAACGGAAAGGGGTT 1214
| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 GGCTGACAGAGCAATGTTTTACCTTTAAGCGCAAGTATTTGAATTTAACGGAAAGGGGTT 1138
Query 1215 CTTTTTCTTTTGTGGGGAAGGATAAGGAGCTAGGGGCGCTGAAAAAGAAGATCCCATTTG 1274
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 CTTTTTCTTTTATGGGGAAGGATAAGGAGCTAGAGGCGCTGAAAAAGAAGATCCCATTTG 1198
Query 1275 TCATCTCTAAATTGGATAAAATTTTGATGGAAGATGAAAAGTTTGTGTCTGAAGGCAAGA 1334
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 TCATCTCTAAATTGGATAAGATTTTGATGGAAGATGAAAAGTTGGTGTCTGAAGGCAAGA 1258
Query 1335 ATGATGCTGGT-TTAAAGCGCCAACTGGATTCTCTTCTTCTGGAAAATCGTCAACTGAAA 1393
||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 ATGATGCTGATGTTAA-GCGCCAACTGGATTCTCTTTTTCTGGAAAATCGTCAACTGAAA 1317
Query 1394 GATTCACTTTCAGACGCTGCTGAGAAGATGTCACAGCTCTCTCAGGCTGA-GGCAGATCA 1452
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1318 GATTCACTTTCAGACGCTGCTGAGAAGATGTCACAGCTGTCTCAGGCT-ACGGCAGATCA 1376
Query 1453 TCAAGAGTTGATTCGAAAGCTCGAAA-CAGATGTTGAGGATTCTCGTAATGAAGCTTCTA 1511
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 1377 TCAAGAGTTGATTCGAAAGCTC-AAATCAGATGTTGAGGATTCTCGTGTTGAAGCTTCTA 1435
Query 1512 TTTACGAAGATGTTTATGGGTGTTTTGTGACGGAGTTTGTGGGCCAGATTAAATGTACAA 1571
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1436 TTTACGAAGATGTTTATGGGTGTTTTATAACGGAGTTTGTGGGCCAGATTAAATGTGCAA 1495
Query 1572 AACAGGAGACAGATTTAGAGCATAGTATGTTGAGAGAAGCATATGAATTGTTATTGGAAG 1631
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 1496 AACAGGAGACAGATTTAGAGCATAGTATGTTGAAAGAAGCATATGAGTTGTTACTGGAAG 1555
Query 1632 ATCTTGCGAGGAAAGAAGCTCGTAAAAGCAAGGAGGATTTTGAAGACTCTTGTGTCAAGT 1691
|||||||||| |||||||| ||| ||||||||||||| |||||||||||||||||| |||
Sbjct 1556 ATCTTGCGAGTAAAGAAGCCCGTGAAAGCAAGGAGGAGTTTGAAGACTCTTGTGTCGAGT 1615
Query 1692 CCGTCATGATGGAAGAGTGTTGTTCAGTCATATATAAAGAAGCCGTGAAGGAAGCTCATA 1751
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1616 CCGTCATGATGGAAGAGTGTTGTTCAGTCATATACAAAGAAGCCGTCAAGGAAGCTCATA 1675
Query 1752 AGAAAATTGTTGAGTTGAACTTGCATGTAACAGAAAAAGAAGGTACTCTAAGATCAGAGA 1811
|||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1676 AGAAAATTGTAGAGTTGAACATGCATGTAACAGAAAAAGAAGGAACTCTGAGATCAGAGA 1735
Query 1812 TGGTTGACAAGGAAAGACTGAAAGAGGAGATTCATAGGCTGGGTTGTCTTGTTAAGGAGA 1871
|||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||
Sbjct 1736 TGGTTGACAAGGAAAGACTGAAAGAGGAGATTCATATGCTGGGGTGTCTCGTCAAGGAGA 1795
Query 1872 AGGAGAATTTAGTCCAAACAGCTGAGAATAACTTGGCTACAGAGAGAAAGAAAATTGAGG 1931
||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 1796 AGGAGAATTTAGTCCAAACGGCAGAGAATAACTTGGCTACAGAGAGAAAGAAAGTCGAGG 1855
Query 1932 TAGTCTCTCAACAGATTAACGATCTGCAATCTCAGGTGGAACGGCAAGAAACAGAAATTC 1991
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1856 TAGTCTCTCAACAGATTAACGATCTGCAATCTCAGGTAGAACAGCAAGAAACAGAAATTC 1915
Query 1992 AGGATAAGA-TAGAAGCACTGAGCGTTGTTTCGGCACGCGAGTTAGAGAAAGTAAAAGGT 2050
||||||| | | ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1916 AGGATAAAAGT-GAAGCACTGAGAGTTGTTTCGGCACGCGAGTTAGAGAAAGTAGAAGGT 1974
Query 2051 TATGAGACGAAGATATCCAGCTTGAGAGAAGAGTTGGAACTAGCAAGAGAGAGTTTgaag 2110
||||||||||||||||||| |||||||||||| | ||| |||||| |||||||||||||
Sbjct 1975 TATGAGACGAAGATATCCAATTTGAGAGAAGAGCTAGAATTAGCAATAGAGAGTTTGAAG 2034
Query 2111 gaaatgaaagatgaaaaaaggaaaaccgaggaaaagttatcagagacaaaagcagagaaa 2170
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2035 GAAATCAAAGATGAAAAAAGGAAAACCGAGGAGAAGTTATCAGCGACAAAAGCAGAGAAA 2094
Query 2171 gagaCACTTAAGAAGCAACTTGTGTCTCTGGACTTAGTCGTTCCTCCTCAATTGATAAAA 2230
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2095 GAGACACTTAAAAAGCAACTTGTGTCTCTGGACTTAGTCGTTCCTCCTAAATTGATAAAA 2154
Query 2231 GGGTTCGACATTCTAGAGGGTTTGATAGCAGAAAAGACGCAAAAAACGAATTCTAGGTTG 2290
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2155 GGGTTCGACATTCTAGAGGGTTTGATAGCAGAAAAGATGCAAAAAACGAATTCGAGGTTG 2214
Query 2291 AAAAACATGCAGAGTCAACTGAGTGATCTGTCACATCAGATCAATGAAGTCAAGGGGAAA 2350
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2215 AAAAACATGCAGAGTCAATTGAGTGATCTGTCACATCAAATCAATGAAGTCAAGGGGAAA 2274
Query 2351 GCATCTACGTACAAGCAACGGCTGGAGAAGAAGTGTTGTGACCTCAAGAAGGCTGAGGCT 2410
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 2275 GCATCGACGTACAAGCAACGGCTGGAGAAGAAGTGTTGTGACCTCCAGAAGGCCGAGACT 2334
Query 2411 GAGGTTGATCTTCTTGGAGATGAGGTTGAAACTCTTTTGGATCTTCTTGAGAAAATATAT 2470
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2335 GAGGTTGATCTTCTTGGAGATGAGGTTGAAACTCTCTTGGATCTTCTTGAGAAAATATAT 2394
Query 2471 ATCGCTCTCGATCATTACTCTCCAATCCTAAAGCATTACCCTGGCATCATTGAGATTTTG 2530
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2395 ATCGCTCTCGATCATTATTCTCCAATCCTAAAGCACTACCCTGGCATCATTGAGATTTTG 2454
Query 2531 AGGCTTGTCCGGAGAGAACTTAGCGGAGAATCAAAGAGACCATCGGGTTGATAAGTCGGA 2590
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2455 AGACTTGTCCGGAGAGAACTTAGCGGAGAATCAAAGAGACCATCAGATTGATAAGTCGGA 2514
Query 2591 TCTCTTTCACACTAGTTTATTTCTGTTTCTTTCTGTACAGATCTCTCAGGCTTATTTAAT 2650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2515 TATCTTTCACACTAGTTTATTTCTGTTTCTTTCTGTACAGATCTCTCAGGCTTATGTAAT 2574
Query 2651 GCTGTTGATGTTTAGTTTTGTTCAGTAGGTAGGTTTTGATAAATGTACTGTCATCAACT- 2709
| || ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |
Sbjct 2575 GTTGATGATGTTTAGTTTTGTTCAGTAGATAGGTTTTGATAA-TGTACTGTCATGAATTC 2633
Query 2710 GAA---TGT--T-T--GATCACCGGATCTTTCAATCTTAGAATACAGTTGGGTTACAT 2759
||| ||| | | ||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 2634 GAAAAATGTGATGTTTGATCACCGGATCTTTCAGTCTTAGAATACAATTGGATTACAT 2691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104100639585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5