BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34740.1
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901307 jgi|Araly1|901307|Al_scaffold_0004_1957 1050 0.0
> Ahg901307 jgi|Araly1|901307|Al_scaffold_0004_1957
Length=720
Score = 1050 bits (568), Expect = 0.0
Identities = 662/706 (94%), Gaps = 11/706 (2%)
Strand=Plus/Plus
Query 347 ATGGAAG-ACTTCATCGTGGCTGACACCAAAACCGTTAAAGGCCACAATCTTGGGTTATA 405
|||| || ||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGG-AGTACTACATCGTAGCTGATACCAAAACCGTTAAAGGCCACAATCTTGGGTTATA 59
Query 406 CGCTATATTCGACGGCCACTCAGGCAGTGATGTTGCGGATTATCTGCAGAACCATCTCTT 465
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||
Sbjct 60 CGCTATATTCGACGGCCACTCAGGCATTGATGTTGCGGATTATTTGCATAACCATCTATT 119
Query 466 TGATAACATCTTGAGTCAGCCGGATTTTTGGAGAAACCCTAAGAAGGCAATCAAAAGAGC 525
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 TGATAACATATTGAGTCAGCCGGATTTTTGGAGAAACCCTAAGAAGGCAATCAAGAGAGC 179
Query 526 GTATAAATCTACGGACGACTACATTCTTCAAAACGTGGTTGGTCCACGAGGTGGCTCCAC 585
||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||
Sbjct 180 GTATAAATCTACGGACGACTACATTCTCCATAACATAGTTGGTCCACGAGGTGGCTCCAC 239
Query 586 GGCTGTGACGGCTATAGTAATTGATGGGAAGAAAATTGTGGTTGCAAACGTTGGAGATTC 645
||||||||||||||||||||| |||| |||| || |||| |||||||||||||||||||
Sbjct 240 TGCTGTGACGGCTATAGTAATTAATGGTAAGACAACTGTGATTGCAAACGTTGGAGATTC 299
Query 646 AAGAGCAATCTTGTGTCGTGAAAGTGATGTAGTCAAACAAATTACGGTTGATCACGAACC 705
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAGCAATCTTGTGTCGTGCAAGTGATGTAGTCAAACAAATTACGGTTGATCACGAACC 359
Query 706 TGACAAAGAGAGAGATCTTGTCAAGAGCAAAGGCGGCTTTGTCTCCCAAAAGCCAGGCAA 765
|||||| |||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 360 TGACAAC---------CTTGTCGAGAGCAAAGGCGGCTTCGTCTCCCAAAAGCCAGGTAA 410
Query 766 TGTTCCGAGAGTGGATGGACAACTAGCGATGACGCGTGCGTTTGGAGACGGAGGCCTTAA 825
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 411 TGTTCCGAGAGTGGATGGACAACTAGCGATGTCGCGCGCGTTTGGAGACGGAGGCCTTAA 470
Query 826 AGAGCATATAAGTGTGATCCCGAACATAGAGATTGCCGAGATCCACGATGACACAAAGTT 885
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 AGAGCATATAAGTGTGAGACCGAACATAGAGATTGTCGAGATCCACGATGACACAAAGTT 530
Query 886 CTTGATCTTGGCTAGCGATGGACTCTGGAAGGTGATGTCGAACGACGAGGTTTGGGATCA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 CTTGATCTTGGCTAGCGATGGACTCTGGAAGGTGATGTCGAACGACGAGGTTTGGCATCA 590
Query 946 AATCAAAAAGAGAGGGAATGCAGAAGAAGCTGCGAAAATGCTAATTGATAAAGCCTTGGC 1005
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 591 AATCAAAAAGAGAGGGAATGCAGAAGAAGCTGCGAAAACGCTAATTGATAAAGCGTTGGC 650
Query 1006 TAGAGGAAGTAAAGATGATATCTCTTGTGTTGTTGTTTCTTTCCTT 1051
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 TAGAGGAAGTAAAGATGATATCTCTTGTGTTGTTGTTTCTTTTCTT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39685956597
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5