BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34750.1
Length=2186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482439 jgi|Araly1|482439|fgenesh2_kg.4__1499__AT2G34750.1 3086 0.0
Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139 1218 0.0
Ahg934507 jgi|Araly1|934507|scaffold_402495.1 726 0.0
> Ahg482439 jgi|Araly1|482439|fgenesh2_kg.4__1499__AT2G34750.1
Length=2134
Score = 3086 bits (1671), Expect = 0.0
Identities = 1995/2149 (93%), Gaps = 32/2149 (1%)
Strand=Plus/Plus
Query 30 AAAAAACCATAGCGAAGGAGTAAAAAACGAAGGCCGGAATTATCAGAACGGGACAGTGAC 89
||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 1 AAAAAACCATAGCGAAGGAGTGGAAAACGAAGACCGGAGTTATCAGAACGGGACAGTGAC 60
Query 90 AAGGGTTTCCCT-GAGCTGACGGACCCTTTCAATTATTCATCCTCGAAAGTTCC-ACACT 147
||||| || | | ||||||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct 61 AAGGG-TTGCGTGGAGCTGACGGAGCCTTTCAATTATTCATCCTTGAAAGTTCCGA-ACT 118
Query 148 TTCG-GCAACTTGAAGTAGCAGCACGATTTACATTAAGTCCAGAGAGGATGGGAGCAGTA 206
|| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 119 TT-GACCAACTTGAAGTAGCAGCACCATTTACA-TAAGTCCAGAGAGGATGGGAGCAGTA 176
Query 207 GAGCTTATGAGTGATCCATCGAGCTTATGCACAGTCGAGAACTATGTGGACAACGTTGAT 266
|||||| | ||||||||||||||||||| |||||| | | ||||||||||||||||||||
Sbjct 177 GAGCTTCTAAGTGATCCATCGAGCTTATACACAGT-G-G-ACTATGTGGACAACGTTGAT 233
Query 267 TTATCTGATAC-GCAATTGGTGCAGACCGTGAGAAAGGCTCTTACATCTGTCAAAACTGG 325
|||||||| || | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 TTATCTGACACAG-ATTTGGTGCAGACCGTGAGAAAGGCCCTTACATCTGTCAAAACTGG 292
Query 326 GGACTCAGACCTTTATAGTGAGATGGTTGGAGTTA-TGGCACGGGACATCAAAGAATTTA 384
||||||||||||||| |||||| | |||||||||| | || |||||||||||||||||
Sbjct 293 GGACTCAGACCTTTACAGTGAGCTTGTTGGAGTTATTAACA-AGGACATCAAAGAATTTA 351
Query 385 AGGATCCTGATGTAGTGGCGCAGCTTGAGACAGTCTTGAAAGCTCTATCAGGCGCTGTGG 444
|||||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 352 GGGATCCCGATGCAGTGGCGCAGCTTGAGACAGTCTTGAAGGCTCTGTCAGGCTCTGTGG 411
Query 445 CTTGCATAGATGTCCTTCACCATCAAAAGCTTCTTTCTGCGCTTTTTCGAATGAAATTGT 504
||||||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 412 CTTGCATAGATATCGTTCACCATCAAAAGCTTCTTTCTTCACTTTTTGGAATGAAATTGT 471
Query 505 GGGACCACAGACCTGATGTCATGGATGCATTGGTGAACCTTGTCATATCACTGGCTGTCA 564
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 472 GGGACCACAGACCTGTTGTCATGGATGCATTGGTGAACCTAGTCATATCACTGGCTGTCA 531
Query 565 CTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGCTCGTAAGCAACTTCGTTCCACCTC 624
|| ||||||||||| | ||| |||||||||||||||| ||||||||||||||| | ||||
Sbjct 532 CTCGTGGAAAGTATCTGGACCCTTGTCTGAATATGCTTGTAAGCAACTTCGTTGCGCCTC 591
Query 625 CTTGGGTAGTGAATAACCTTTCGCACTCCCGTATACTAAACAAGAAGATAGACGTTCTTT 684
||| |||||| ||||| ||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 592 CTTCGGTAGTAAATAATCTTTCGCACCCCCGTGTACTAAACAAGAAGATAGAAGTTCTTT 651
Query 685 CTCGGGTGCATGCAGCGCTTCTGAAAATCTCTATTTTGGTTCCTCTTACTCCCTCAAGAT 744
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 652 CTCGGGTGCATGCAGCGCTTCTGAAAATATCTATTTTGGTTCCTCTTACTCCCTCAAGAT 711
Query 745 TAGTGCCAATGCTCTTCCAGCAAATGCCC-AAGATGCACAAAAAGGACCATTCGATAGTG 803
|||||||||||||||| ||| |||||||| || | | |||||||||||||||||||||||
Sbjct 712 TAGTGCCAATGCTCTTTCAGGAAATGCCCAAAAAAG-ACAAAAAGGACCATTCGATAGTG 770
Query 804 ATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGC 863
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 771 ATATATGTGGAGAGCTTATTAAAGTTGGAGAATAGCCCAATCGGGCAAGTTGGTGGCAGC 830
Query 864 ATGATTCTTGGTATGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGAATGGGAT 923
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 831 ATGATTCTTGGTGTGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGGATGGGAT 890
Query 924 GATATTCCACAAGATGACTCTAGTAGAGGAATGTTTGATATGGAACTTGAAGATGCAGCT 983
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 891 GATATTCCACAAGATGACTCTAGTAGAGGCATGTTTGATATGGAACTTGAAGACGCAGTT 950
Query 984 GAAGGCACTATGAATGATGGAGACGAGCTTCCAGTGGGACCTCTAAAGCAGGATACATCA 1043
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 951 GAAGGCTTTATAAATGAAGGAGACGAGCTTCCTGTGGGACCTCTAAAGCAGGATTCATCA 1010
Query 1044 GATGGAAGTATAGTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1103
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GATGGAAGTGTATTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1070
Query 1104 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAAGCCTCTTCAAGTCATTT 1163
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1071 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAATCCTCTTGGAGTCATTT 1130
Query 1164 GAAAACTTCATTCTGAACACATACAAATCAAAATTCACCCAGTTTCTGATATTCTATGCC 1223
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1131 GAGAACTTCATTCTGAATACATACAAATCAAAATTCACCCAGTTTCTGATGTTCTATGCC 1190
Query 1224 TGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGTGGAGATTTTT 1283
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1191 TGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCAAGTAAGCTGGTGGAGATTTTT 1250
Query 1284 CTCTCCAGCAACAAGCATGTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTC 1343
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CTCTCCAGCAACAAGCATCTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTC 1310
Query 1344 TTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATA 1403
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTGGCTCGTGGAAAGTTTTTGCCGGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATA 1370
Query 1404 GATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATACTAGGCCTGAAGCACATCAG 1463
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1371 GATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATATTAGGCCTGAAGCACATCAG 1430
Query 1464 ATTTTCTTCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCAGGATGAGATCCATC 1523
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1431 ATTTTCTTCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCCGGATGAGGTCCATC 1490
Query 1524 TTGGATGTTCCTCGCTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAATGCACAAA 1583
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1491 CTGGATGTTCCTCGCCTTCGGTCCCAGCTTACACCATTGGAGTCAATTTTAATGCACAAG 1550
Query 1584 CTAAACCCATTGATGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTTAGACAAGCTAAA 1643
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1551 CTAAACCCATTGAGGGTATGCCTTCCATCAGTAGTTGCGGAGTTCCTTAGACAAGCTAAA 1610
Query 1644 GAAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAG 1703
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GCAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAG 1670
Query 1704 CTTTCCCGTGCTTTTGGCGGGTTTGAGAGGCTGGATACATTCTTCCCATTTGACCCTTGC 1763
|| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 1671 CTCTCCCGTGCTTTTGGCGGGTGTGAGAGGCTTGATACGTTCTTCCCATTTGACCCTTGC 1730
Query 1764 TTGCT-AAAATCCTCAAACAGCTTTATCTCCCCAAATTTCATCTACTGGTCAATGGTCAA 1822
||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1731 TTGCTCAAAA-CCTCAAACAGCTTTATCTCCCGGAATTTCATCTACTGGTCAATGGTGAG 1789
Query 1823 AGCGACCTATGACGAAGATGATGA---TGAT-A--ATGATGCTGAGGTGATCGTGAATGG 1876
||||||||||| ||| |||| || |||| | |||||||||||||||||||||| ||
Sbjct 1790 TGCGACCTATGATGAATATGAAGAAGATGATGATTATGATGCTGAGGTGATCGTGAACGG 1849
Query 1877 AGATGAGGACAGTGACGAAGATGACGAGGCTGATCTTGATTACGCCCTGAACAAGATGTC 1936
|||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct 1850 AGATGAGGACAGTGACGAAGGGGACGAGGCTGATCTTGACTATGCCCTGAACAAAATGTC 1909
Query 1937 CATAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTTTTAAGAATGCC 1996
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1910 CATAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTCTTAAGAATGCC 1969
Query 1997 TTCCAGGATCAGACCGTCAACGAGTCCTGAATCCTTGTGATTCTACTATACACATTTTTG 2056
|||||| |||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1970 TTCCAGAATCAGACCCTCCACTAGTCCTGAATCCTTGTGATTCTACTATACGCATTTTTG 2029
Query 2057 TAGCAATATGTAACAGTGATTCGACT-GAGAACATATTATTGTATGAAACAATGTTTGTT 2115
|| ||||||||||||||||||| || | || | ||||||||||||||||| ||||||||
Sbjct 2030 TAACAATATGTAACAGTGATTCAACACG-GAGCTTATTATTGTATGAAACACTGTTTGTT 2088
Query 2116 TTCCTTT-CAAAAAACTGCTTAATA-TGTGGTTCACCTAAT-GAAACAT 2161
||||||| |||||| || ||||| | |||| ||||| ||| |||||||
Sbjct 2089 TTCCTTTACAAAAA-CTACTTAA-ACTGTGATTCAC-TAAAAGAAACAT 2134
> Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139
Length=1833
Score = 1218 bits (659), Expect = 0.0
Identities = 1460/1833 (80%), Gaps = 109/1833 (6%)
Strand=Plus/Plus
Query 253 TGGACAACGTTGATT-TATCTGATAC-GCAATTGGTGCA-GACCGTGAGAAAGGCTCTTA 309
||||||||| ||||| || | || || | |||||||||| | |||| |||||||| |||
Sbjct 47 TGGACAACGCTGATTATAGC-GACACAG-AATTGGTGCATG-CCGTTAGAAAGGCCCTTG 103
Query 310 CATCTGT-CAAAACTGGGGACT-CAGACCTTTATAGTGAGATGGTTGGAGTTATG-GCAC 366
||||||| ||||| |||||| | | ||| ||||||| | | || | | | | |
Sbjct 104 CATCTGTCCAAAA-TGGGGA-TACCGACGATTATAGT--CA-GCTT-AAAACA-GTG-AT 155
Query 367 GGGACATCAAAGAAT-TTAAGGA-TCCTGATGTAGTGGCGCAGCT-TGAGACAGTCTTGA 423
| | ||| ||||| | || || | | |||| |||||| | || ||||||||||||||
Sbjct 156 GTGCCAT-AAAGACTATT-CTGATTTC-GATGCAGTGGC-AAACTATGAGACAGTCTTGA 211
Query 424 -AAGCTCTATCAGGCGCTGTGGCTTGCATAGATGTCCTTCACCATCAAAAGCTTCTTTCT 482
|| |||||||| |||| ||||||||| |||| |||||||| || | ||||||
Sbjct 212 GAA-TTCTATCAGTTTCTGTTGCTTGCATAAATGTAGTTCACCATGAAGATCTTCTTAGA 270
Query 483 GCGCTTTTTCGAATGAAATTGTGGGACCACAGACCTGATGTCATGGATGCATTGGTGAAC 542
| ||||| | |||| |||||| || | |||| ||||||||||||||| |||| |
Sbjct 271 ACTATTTTTGGGATGAGCTTGTGGTTTCAAAAACCTAATGTCATGGATGCATCGGTGGGC 330
Query 543 CTTGTCATATCACTGGCTGTC-ACTAGTGGAAAGTATTTAGACT-CTTGTCTGAATATGC 600
|| ||||||||||||| | | ||||||||||| || | || | ||||| |||||||||
Sbjct 331 CTAATCATATCACTGGCCG-CTACTAGTGGAAAATACCTGGA-TCCTTGTTTGAATATGC 388
Query 601 TCGTAAGCAACTTCGTTCCACCTCCTTGGGTAGTGAAT-AACCTTTCGCACTCCC-GTAT 658
|| |||| || ||| | | |||| ||| || | || || |||| || ||| || |
Sbjct 389 TCATAAGTAATTTCATACAACCTACTT--TTA-AGCATGAA-GTTTCACAAACCCAGT-T 443
Query 659 ACT-AAACAAGAAGATA-GACGTTCTTTCTCGGGTGCATGCAGCGCTTCTGAAAATCTC- 715
| | ||| |||||| | || |||||| | |||||||||| ||| |||| || || ||
Sbjct 444 AGTCAAA-AAGAAG-CAGGAAGTTCTTCCACGGGTGCATGTAGCCCTTCACAAGATTTCT 501
Query 716 TATTTTGGTTCCTCTTACTCCCTC-AAGATTAGTGCCAATGCTCTTC-CAGCAA-ATGCC 772
|| ||| |||||||| ||||||| || ||||||||| || || | | ||| || ||| |
Sbjct 502 TA-TTTAATTCCTCTTGCTCCCTCGAA-ATTAGTGCCTATACT-TGCGCAG-AACATG-C 556
Query 773 CAAG-ATGCACAAAAAGGACCATTC-GATAGTGATATATGTGGAGAGCTTATTAAAATTG 830
| || || || |||||| || ||| | |||||| ||||||||| | | | || || |||
Sbjct 557 CTAGTATTTACGAAAAGGGCCCTTCTG-TAGTGACATATGTGGATAACCTGTTGAAGTTG 615
Query 831 GAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGATTCTTGGT-ATGGTGATGGAGAG 889
|||||||||||||| || |||||| |||||| |||||| | | ||||||||||||||
Sbjct 616 GAGAATAGCTCAATCGGAAAAGTTGTTGGCAGTGTGATTC-TCATGATGGTGATGGAGAG 674
Query 890 GCTGCGAGATTTGGATTTAGAGATTGAATGGGATGATATTC-CACAAGATGACTCTAGTA 948
| |||||||||||||||| || |||| ||| |||||||||| | ||||||||||||| ||
Sbjct 675 GATGCGAGATTTGGATTTGGAAATTGGATGCGATGATATTCTC-CAAGATGACTCTAATA 733
Query 949 GAGGAATGTTTGATATGGAACTTGAAGATGCAGCTGAAGGCACTATGAATGATGGAGACG 1008
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 734 GAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCACTATGAATGAAGGAGACG 793
Query 1009 AGCTTCCAGTGGGACCTCTAAAGCAGGATACATCAGATGGAAGTATAGTCTCTAAGTTGT 1068
|| |||||||||| ||||||| || ||||||||||||||| | | |||||| || |||
Sbjct 794 AGTTTCCAGTGGGGGCTCTAAAACAAAATACATCAGATGGAAATGTGGTCTCTGAGCTGT 853
Query 1069 TGGACAAATTGATGGTCGTAGCTTTTGAGCATCTTGAATCCTGTCAAAA-TGATGGTCGT 1127
||||||||||||||||| || ||||||| ||||||||| |||||||||| | |||||||
Sbjct 854 TGGACAAATTGATGGTCCTAACTTTTGATCATCTTGAAACCTGTCAAAACTC-TGGTCGT 912
Query 1128 TTGGATCAGGTGTTTGAAAGCCTCTT-CAAGTCATTTGAAAACT-TCATTCTGAACACAT 1185
|||||| |||| ||||||| |||||| || ||| ||||| || | | |||||||||||||
Sbjct 913 TTGGATGAGGTATTTGAAATCCTCTTTCA-GTCGTTTGAGAATTAT-ATTCTGAACACAT 970
Query 1186 ACAAATCAAAATTCACCCAGTTTCTGATATTCTATGCCTGCTCACTGGATCCTGAAAATT 1245
||||||||||||| | ||||||||||| |||||||| |||||||| ||||||||| |||
Sbjct 971 ACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCTCACTAGATCCTGAATATT 1030
Query 1246 GTGGTGTGAAATTTGCTAGTAAGCTAGT-GGAGATTTTTCTCTCCAGCAACAAGCAT-GT 1303
||||||||| |||||| |||||||| || ||| || | ||||||||| ||||| | | |
Sbjct 1031 GTGGTGTGAGATTTGCCAGTAAGCT-GTTGGACATATATCTCTCCAGAAACAAACCTCG- 1088
Query 1304 AGCT-ACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGGCTCGTGGAAAGTTTT 1362
| || ||||| |||||||| ||||||||||| ||||||| |||| |||||||||||||||
Sbjct 1089 A-CTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGTCTCGTGGAAAGTTTT 1147
Query 1363 TGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATAGATGAGTGTGTGGGTTACT 1422
|||||| ||| ||||||||||||||||||||||| ||| | || || |||| || || |
Sbjct 1148 TGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGATTGTGCGGAATATT 1207
Query 1423 GCAGAACTTGCAATGATGATACT-AGGCCTGAAGCACATCAGATT-TTCT-TCTCCGGAT 1479
||||||| |||||||||||| | | ||| ||||||||||| | | |||| | || ||||
Sbjct 1208 GCAGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCA-AGTGTTCTAT-TCTGGAT 1264
Query 1480 GTCAGGCAATCATGTATGTGCTCTGCTTC-AGGATGAGATCCAT-CTTGGATGTTCCTCG 1537
||||||||||| |||||||||| |||||| || ||||||||||| || ||| |||||||
Sbjct 1265 GTCAGGCAATCTTGTATGTGCTATGCTTCCAG-ATGAGATCCATACT-GGACATTCCTCG 1322
Query 1538 CTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAA-TGCACAAACTAAACCCATTGA 1596
||||| || ||||| ||| | ||||||||||| ||| | ||||||||||||||| |||
Sbjct 1323 CTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTATCT-CACAAACTAAACCCACTGA 1381
Query 1597 TGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTTAGACAAGCTAAAGAAGGTGGTCTGT 1656
|||| ||||||||||| |||||| | |||||||||| |||||| |||| ||||||||||
Sbjct 1382 TGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGCTGGTGGTCTGT 1441
Query 1657 TCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAGCTTTCCCGTGCTT 1716
|||| |||||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1442 TCATTGTCTCAGAAGCCTTCATTTTCGATGACCTACACGAGTCTGAGCTCTCTTGTGCTT 1501
Query 1717 TTGGCGGGTTTGAGAGGCTGGATACATTCTTCCCATTTGACCCTTGCTTGCT-AAAATCC 1775
|||| || ||||| ||||| || ||||||||||| |||||||| |||||| | |||||
Sbjct 1502 TTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTTGTTGAAAATG- 1560
Query 1776 TCAAACAGCTTTATCTCCCCAAATTTCATCTACTGGTCAATGGTCAAAGCGACCTATGAC 1835
|| | ||||| ||||||||| || |||| || ||||| ||||| ||| |||| |||||
Sbjct 1561 TCTAGCAGCTATATCTCCCCGAACTTCAACTTCTGGTTAATGGAGAAAACGACTTATGAG 1620
Query 1836 GAAGATGATGATGATAA--T--GATGCTGAGGTGATCGTGAATGGAGATG-AGGACAGTG 1890
||||||||||| ||| | | | || |||||| || ||||||||||||| || ||||||
Sbjct 1621 GAAGATGATGACGATGAGCTTTG-TGATGAGGTCATAGTGAATGGAGATGCAG-ACAGTG 1678
Query 1891 ACGAAGA-TG--ACGAGG-C-TG-ATCTTGATTA-CGCCCTGAACAAGATGTCCATAACG 1943
| || || || |||| | | || | |||||| | || |||| |||||||| ||||
Sbjct 1679 AGGAGGACTGTGACGATGACGTGGAACTTGAT-AGCGAGATGAATAAGATGTCTGTAACT 1737
Query 1944 CCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTTTT-AAGAATGCCTTCCAG 2002
|| || |||||||||| | ||||| || | || || || || |||| ||||||| ||
Sbjct 1738 CCGAAACACTCTTTCATG--CAAGA---AACG-GAGAGGCTCTTGAAGA-TGCCTTCAAG 1790
Query 2003 GATCAGACCGTCAACGAGTCCT---GAATCCTT 2032
|||||||| || || |||||| ||||||||
Sbjct 1791 AATCAGACCATCCACTAGTCCTCCTGAATCCTT 1823
> Ahg934507 jgi|Araly1|934507|scaffold_402495.1
Length=1525
Score = 726 bits (393), Expect = 0.0
Identities = 876/1104 (79%), Gaps = 53/1104 (5%)
Strand=Plus/Plus
Query 642 CTTTCGC-ACTCCCGTATACT--A-AACAAGAAGATAG-ACGTTCTTTCTCGGGTGCATG 696
||||||| || |||| ||||| | || |||| | | | || ||||||| |||||||| |
Sbjct 315 CTTTCGCAAC-CCCGCATACTCGACAATAAGATGCTGGAAC-TTCTTTCCCGGGTGCACG 372
Query 697 CAGCGCTTCTGAAAATCTCTATTTTGGTTCCTCTTACTCCCTCAAGATTAGTGCCAATGC 756
|||| |||| || || ||| |||| ||||| ||| ||||||| | | || |||| || |
Sbjct 373 CAGCTCTTCACAAGATTTCTTTTTTAGTTCCCCTTGCTCCCTCGATACTACTGCCCATAC 432
Query 757 TCTTCCAGCA-AATGCCCAAG-ATGCAC-AAAAAGGA-C-CATTC-G---ATAGTGATAT 807
|| |||| | || || || | ||| | ||| || | | ||| | ||||| ||
Sbjct 433 TCGCCCAG-AGTTTG-CCTAGCGTACACGACAAA-GACCGCTTTCAGCTTGTAGTGCCAT 489
Query 808 ATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGA 867
| ||||||| ||| || | ||||| || |||||||| || ||||| ||||| | | |
Sbjct 490 ACGTGGAGAACTTGTTGCAGTTGGAAAACAGCTCAATCGGAAAAGTTTTTGGCAACGTCA 549
Query 868 TTCTT-GGTATGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGAATGGGATGAT 926
||||| || |||| ||||||||| ||| |||| | ||||| ||||||| |||||||||
Sbjct 550 TTCTTAGG-GTGGTAATGGAGAGGTTGCTAGATCTCGATTTGGAGATTGGGTGGGATGAT 608
Query 927 ATTC-CACAAGATGACTCTAG-TAGAGGAATGTTTGATATGGAACTTGAAGATGCAGCTG 984
|||| | ||||||||||| | | | |||||||||||||||||||| ||||| ||
Sbjct 609 ATTCTC-CAAGATGACTC-CGCCATTGCCATGTTTGATATGGAACTTGACCTTGCAGTTG 666
Query 985 AAGGCACTATGAATGATGGAGACGAGCTTCCAG-TGGGACCTCTAAAGCAGGATACATCA 1043
||||||||| ||||| ||||| ||| |||||| | || |||| | | || || |
Sbjct 667 AAGGCACTACCAATGAAGGAGAGGAGTTTCCAGTTCGG-TCTCT--A--A--AT-CA--A 716
Query 1044 GATGGAAGTATAGTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1103
|||||| | |||||| | ||||||||| | || |||||| || |||||| ||||||
Sbjct 717 AATGGAAATGCCGTCTCTGACTTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTT 776
Query 1104 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAAGCCTCTTCAAGTCATTT 1163
||||||||||| || ||||||| ||||| |||||||||||| || ||| |||| |||
Sbjct 777 AAATCCTGTCAAGATTCTGGTCGTCTGGATGAGGTGTTTGAAAATCTGTTCGAGTCGTTT 836
Query 1164 GAAAACTTCATTCTGAACACATACAAATC-AAAA-TTCACCCAGTTTCTGATATTCTATG 1221
| ||||| ||||||||| | | ||| | |||| |||| ||||| ||||| |||||||
Sbjct 837 GTGAACTTAATTCTGAACGCGCAAAAAACAAAAATTTCA--CAGTTCCTGATGTTCTATG 894
Query 1222 CCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGT-GGAGATT 1280
| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||
Sbjct 895 CGTGCTCACTAGATCCTGAAAATTGTGGTGTGAAATTTGCCAGTAAGCT-GTTGGACATA 953
Query 1281 TTTCTCTCCAGCAACAAG--CA-TGTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCT 1337
|||||| ||||||||| || | || |||||| | || ||| ||||||||||| |||
Sbjct 954 TTTCTCAACAGCAACAACAACAATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCT 1013
Query 1338 AGCTTCTTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGG 1397
|||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1014 AGCTACTTGGCTCGTGCAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGA 1073
Query 1398 TTGATAGATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATACTAGGCCTGAAGCA 1457
||| | |||||||||| || |||||||||||| |||||||||||| |||||||||||| |
Sbjct 1074 TTGGTGGATGAGTGTGCGGATTACTGCAGAACATGCAATGATGATGCTAGGCCTGAAGAA 1133
Query 1458 CATCA-GATTTTCT-TCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCAGGATGA 1515
||||| | |||||| | || ||||||||||||||| ||||| || | |||||| | ||||
Sbjct 1134 CATCAAG-TTTTCTAT-TCAGGATGTCAGGCAATCTTGTATTTGTTATGCTTCCGAATGA 1191
Query 1516 GATCCATCTTGGATGTTCCTCGCTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAA 1575
|||| ||| | |||||||||||||| || || ||| |||||||||||||||| | |||
Sbjct 1192 GATCAATCCTAGATGTTCCTCGCTTCCGATCGCAGATTACACCATTGGAGTCGGTTTTAT 1251
Query 1576 -TGCACAAACTAAACCCATTGATGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTT-AG 1633
| ||||||||| |||| |||| ||| ||||||||||| |||||| | ||||||||| |
Sbjct 1252 CT-CACAAACTAGACCCGTTGAAGGTGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTTAT 1310
Query 1634 ACAAGCTAAAGAAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACT 1693
||||| |||| |||||||||||||| ||||| ||| | |||||||| ||||||||||
Sbjct 1311 -CAAGCCAAAGCCGGTGGTCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTACC 1369
Query 1694 TGAGTCTGAGCTTTCCCGTGCTTT 1717
||||||||||||||| ||||||||
Sbjct 1370 TGAGTCTGAGCTTTCTCGTGCTTT 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82274929200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5