BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34770.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345212 jgi|Araly1|345212|fgenesh1_pg.C_scaffold_4001554 1197 0.0
> Ahg345212 jgi|Araly1|345212|fgenesh1_pg.C_scaffold_4001554
Length=714
Score = 1197 bits (648), Expect = 0.0
Identities = 692/714 (97%), Gaps = 0/714 (0%)
Strand=Plus/Plus
Query 240 ATGGTTGCTCAGGGATTCACTGTGGATCTTAAAAAGCCCCTTGTATTTCAGGTTGGTCAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGCTCAGGGATTCACTGTGGATCTTAAAAAGCCCCTTGTATTTCAGGTTGGTCAT 60
Query 300 CTTGGAGAAGATTATGAGGAATGGGTTCACCAACCTATCGCGACCAAGGAAGGCCCTCGG 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTTGGAGAAGATTATGAGGAATGGGTTCACCAACCTATCGCAACCAAGGAAGGCCCTCGT 120
Query 360 TTTTTTCAGAGTGACTTTTGGGAGTTCTTGACACTTACAGTTTGGTGGGCAGTTCCTGTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTTCAGAGTGACTTTTGGGAGTTCTTGACACTTACAGTTTGGTGGGCAGTTCCTGTC 180
Query 420 ATTTGGTTGCCAGTTGTAGTCTGGTGCATATCAAGGTCAGTAAGTATGGGATGTTCACTT 479
|||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||
Sbjct 181 ATTTGGTTGCCAGTTGTAGTCTGGTGCATATCAATGTCAATAAGTATGGGCTGCTCACTT 240
Query 480 CCAGAAATCGTCCCAATTGTTGTCATGGGAATATTCATCTGGACATTTTTTGAATACGTT 539
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CCAGAAATCGTCCCAATTGTTTTCATGGGAATATTTATCTGGACATTTTTTGAATACGTT 300
Query 540 CTTCACCGGTTCGTTTTCCACATAAAAACGAAGAGTTACTGGGGAAACACTGCACACTAT 599
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CTTCACCGGTTTGTTTTCCACATAAAAACGAAGAGTTACTGGGGAAATACTGCACACTAT 360
Query 600 CTTATTCACGGATGCCATCATAAGCACCCGATGGACCACCTTCGGCTCGTCTTTCCTCCT 659
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 361 CTTATTCACGGATGCCATCATAAGCACCCAATGGACCACCTTCGACTCGTCTTTCCTCCT 420
Query 660 ACTGCAACAGCGATTTTATGCTTTCCGTTCTGGAACATTGCGAAGGCTATCTCAACTCCT 719
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 421 ACTGCAACAGCGATTTTATGCTTTCCGTTTTGGAACATCGCGAAGGCTATCTCAACTCCT 480
Query 720 TCAACCGCACCTGCATTGTTTGGTGGAGGCATGCTCGGATATGTGATGTACGATGTCACT 779
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TCAACTGCACCTGCATTGTTTGGTGGAGGCATGCTCGGGTATGTGATGTACGATGTCACT 540
Query 780 CATTATTACCTTCACCATGCCCAACCTACTAGACCAGTGACCAAAAATCTCAAGAAGTAC 839
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 541 CACTATTACCTTCACCATGCCCAACCTACTAGATCAGTGACAAAAAATCTCAAGAAGTAC 600
Query 840 CATTTGAATCATCACTTCAGGATTCAGGACAAAGGATTTGGTATAACTTCGTCGTTATGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTTGAATCATCACTTCAGGATTCAGGACAAAGGATTTGGTATAACTTCGTCGTTATGG 660
Query 900 GACATAGTCTTTGGGACACTTCCCACCACAAAAGCCCCCAGAAAAGAGCAATAG 953
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 661 GACATAGTATTTGGGACACTTCCCACTACAAAAGCCCCCAGAAAAGCGCAATAG 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5