BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34790.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934079 jgi|Araly1|934079|scaffold_402067.1 2614 0.0
Ahg473307 jgi|Araly1|473307|fgenesh2_kg.1__3261__AT1G30760.1 1166 0.0
> Ahg934079 jgi|Araly1|934079|scaffold_402067.1
Length=1640
Score = 2614 bits (1415), Expect = 0.0
Identities = 1561/1633 (96%), Gaps = 4/1633 (0%)
Strand=Plus/Plus
Query 13 CTCATCGACATAAAAAGAAAAATGGCGTTTGCGATATCAAAGCGAAACGCAACCTTGTTT 72
||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CTCATTTACATCAAAAG-AAAATGGCGTTTGCGATATCAAAGCGAAACGCAACCGCGTTT 59
Query 73 CTTGTAACGCTACTACTAATCTCCGTTCCATTGTCTTCCTCCACGCTACAACAAGATTTC 132
||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 60 CTTCTAACGCTACTACTAGTCTCCGTTCCATTGTCTTTCTCTACGCTACAACAAGATTTC 119
Query 133 GTGAAGTGCCTTGTCGACAACTCCGACGTCTCCTTCCCCATAACGGCGTCGTTTTTCTCA 192
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 120 GTGAAGTGCCTTGTCGACAACTCAGACGTCTCGTTCCCTATAACGGCGTCGTTTTTCTCA 179
Query 193 CCGGACCAAAACGCTACTTTGTTTAAAGAGGAGCTTGAATCAACGGCACAGAATCTCCGT 252
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 CCGGACCAAAACGCTACTTTGTTTAAAGAAGAGCTTGAATCAACGGCACAGAATCTCCGT 239
Query 253 TACTTGACGCCGTCAAACCCGAAGCCCGTGTTCATATTCGAGCCTTTGTACGAGACGCAT 312
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 240 TACTTGACGCCGTCATACCCGAAGCCTGTATTCATATTCGAGCCTTTGTACGAGACGCAT 299
Query 313 GTCCAAGCAGCGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGCGGT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCCAAGCAGCGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGCGGT 359
Query 373 GGTCACGACTACGAAGGGCTCTCGTTTGTTGCCGAGGACGAAACGCCGTTTGTGATCGTT 432
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 360 GGTCACGACTACGAAGGGCTCTCGTTCGTCGCCGAGGACGAGACGCCGTTTGTGATCGTT 419
Query 433 GATTTGTCGAAGCTTAGACAGGTTGACGTTGATTTGGACAGTAACAGTGCGTGGGCTCAT 492
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTTGTCAAAGCTTAGACAGGTCGACGTTGATTTGGACAGTAACAGTGCGTGGGCTCAT 479
Query 493 GCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGT 539
Query 553 TTTCCGGCCGGTTTATGCTCAAGCCTTGGCATCGGTGGCCACTTAGTCGGTGGAGCGTAC 612
|| ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 540 TTCCCGGCTGGTTTATGCTCGAGCCTTGGCATCGGCGGCCACTTAGTCGGCGGAGCGTAC 599
Query 613 GGTTCCATGATGAGGAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATCGTC 672
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 GGTTCCATGATGCGTAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATTGTC 659
Query 673 GACGCCAACGGCCAAATCCTCGATCGCGCGGCAATGGGAGAAGACGTCTTCTGGGCGATT 732
|||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 660 GACGCCAACGGCCAGATCCTTGATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATT 719
Query 733 CGCGGCGGCGGCGGTGGTAGCTTCGGCGTGATATTGGCCTGGAAGATTAAGCTCGTCCCC 792
||||| || |||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 720 CGCGGTGGTGGCGGTGGTAGCTTCGGCGTGATACTCGCCTGGAAGATCAAGCTCGTCCCC 779
Query 793 GTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAA 839
Query 853 GTTTTATACAAATGGGAACAAATCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTC 912
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTTTATACAAATGGCAACAAGTCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTC 899
Query 913 ATTATTTCACCGGCCAGTAAAACCACCAAACCGGGAAATCGAACCATCTCGATGTCGTAC 972
|||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 900 ATTATTTCGCCGGCGAGTAAAACTACCAAACCGGGAAATCGAACCATCTCTATGTCGTAC 959
Query 973 CAAGCTCAGTTTCTCGGAGACTCCAATCGGCTCTTGCAGGTGATGCAGAAGAGTTTCCCT 1032
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 CAAGCTCAGTTTCTCGGCGACTCGAATCGGCTCTTGCAGGTGATGCAGAAGAGTTTCCCT 1019
Query 1033 GAGTTAGGACTGACGAAGAAGGACTGCACAGAAATGAGCTGGATCAAATCAGTGATGTAC 1092
||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1020 GAGCTAGGACTGACGAAGAAGGACTGCACAGAGATGAGCTGGATCAAAGCAGTGATGTAC 1079
Query 1093 ATTGCAGGTTTTCCAAACAGTGCAGCACCGGAAGCTTTACTAGCCGGAAAATCATTGTTC 1152
|||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1080 ATTGCAGGATTTCCAAACAGTGCACCACCAGAAGCTTTACTAGCTGGAAAATCATTGTTC 1139
Query 1153 AAGAATCACTTCAAAGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTTTA 1212
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAGAATCACTTCAAGGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTTTA 1199
Query 1213 GAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCACCGTTAACGATATGGAACCCTTAC 1272
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1200 GAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCGCCGCTAACGATATGGAACCCTTAC 1259
Query 1273 GGAGGAATGATGTCGAGGATCTCCGAGTCAGAGATACCTTTCCCTCATAGGAACGGGACA 1332
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 GGAGGAATGATGTCGAGGATCTCCGAGTCAGAGATACCTTTCCCTCATAGAAACGGGACG 1319
Query 1333 TTGTTCAAGATTCAGTGGCTAAGCACGTGGCAAGATGGGAAAGTGAGCGAGGA-AAGGCA 1391
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1320 TTGTTCAAGATTCAGTGGCTAAGCACGTGGCAAGATGGGAAAGTGAGTGAG-ACAAGGCA 1378
Query 1392 TATGAAGTGGATTAGGGAGATGTATAGTTACATGGAGCAGTATGTGTCGAAGAACCCGAG 1451
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1379 TATGAAGTGGATTAGGGAAATGTATAGTTACATGGAGCAATACGTGTCGAAGAACCCGAG 1438
Query 1452 ACAGGCGTATGTGAATTACAGGGATCTTGATTTGGGGACTAATGAAGGAGAGACTGATGC 1511
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1439 ACAGGCCTATGTGAATTACAGGGATCTTGATTTGGGGACGAATGAAGGAGAGAGTGATGC 1498
Query 1512 TAGAGAGTGGGGTGCTAAGTATTACAAAGGGAATTTCGAGAGGTTGGTGAAGATTAAGGG 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TAGAGAGTGGGGTGCTAAGTATTACAAAGGGAATTTCGAGAGGTTGGTGAAGATTAAGGG 1558
Query 1572 TGAGTTTGATCCTGATAATTTCTTCAGGCATGAACAGAGTGTTCCGACAAAGATTGGTTG 1631
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1559 TGAGTTTGATCCTGACAATTTCTTCAGGCATGAACAAAGTGTTCCCACAAAGATTGGTTG 1618
Query 1632 ATGGATTTGGAGT 1644
||||||| |||||
Sbjct 1619 ATGGATT-GGAGT 1630
> Ahg473307 jgi|Araly1|473307|fgenesh2_kg.1__3261__AT1G30760.1
Length=1808
Score = 1166 bits (631), Expect = 0.0
Identities = 1261/1557 (81%), Gaps = 76/1557 (5%)
Strand=Plus/Plus
Query 98 TTCCATTGTCTTCCTCCACGCTACAACAAGATTTCGTGAAGTGCCTTGTCGACAACTCCG 157
||||||||||||| ||||| | |||||||| ||||||| ||| || |||||||||||||
Sbjct 74 TTCCATTGTCTTCTTCCACTATGCAACAAGACTTCGTGATGTGTCTAGTCGACAACTCCG 133
Query 158 ACGTC-TCCTTCCCCAT-AACGGCGTCGTT-TT-TCTCACCGGACCAAAACGCTA-CTTT 212
||| | || || || || || ||||||| || |||| | |||| |||||| | |||
Sbjct 134 ACG-CTTCGTTTCCAATGGAC-TCGTCGTTCTTCACTCA-C-GACCTAAACGC-ATCTTC 188
Query 213 GTTTAAAGAGGAGCTT-GA-ATCAACGGCACAGAATCTCCGTTACTTGACGCCGTCAAAC 270
|||||| || | || || | | | || || |||||||||||||||| ||| |||||
Sbjct 189 CTTTAAACTGGCG-TTAGAGA-CGTCAGCTCAAAATCTCCGTTACTTGATGCCATCAAAT 246
Query 271 CCGAAGCCCGTGTTCATATTCGAGCC-TTTGTACGAGACGCATGTCCAAGCAG-CGGTCG 328
|| ||||| | |||||| |||||||| || ||||| ||||| || ||||| | || ||
Sbjct 247 CCTAAGCCAGAGTTCATTTTCGAGCCGCTT-TACGAAACGCACGTTCAAGCCGCCGTTC- 304
Query 329 TGTGTGCCAAGAAGCTT-CAGCTTCACCTCCGGCTACGTAGCGGTGGTCACGACTACGAA 387
| || ||||||||| || |||||||| | |||||| | ||||||||||| |||||||||
Sbjct 305 TTTGCGCCAAGAAG-TTGAAGCTTCACTTGCGGCTAAGAAGCGGTGGTCATGACTACGAA 363
Query 388 GGGCTCTCGTT-TGT-TGCCGAGGA-CGAAAC-GCCGTTTGTGATCGTTGATTTGTCGAA 443
|| ||||| || || | | || || ||||| | ||||||||||||| || ||||||||
Sbjct 364 GGCCTCTC-TTACGTCT-CGGA-GATGGAAACTG-CGTTTGTGATCGTCGACTTGTCGAA 419
Query 444 GCTTAGACAGGTTGA-CGTTGATTTGGACAGTAACAGTGCGTGGGCTCATGCTGGTGCTA 502
|||||||| | | | |||||| | || |||||||| ||||||| ||| || ||||||
Sbjct 420 ACTTAGACA-GATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCGGGTGCTT 478
Query 503 CCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGTTTTCCGGCCG 562
| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 479 CTATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCATGGTTTTCCGGCGG 538
Query 563 GTTTATGCTCAAGCCTTGGCATCGGTGGCCACTTAGTCGGTGGAGCGTACGGTTCCATGA 622
|||||||| | ||||| |||||||| || ||| || |||| ||||| || || || ||||
Sbjct 539 GTTTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGCTCAATGA 598
Query 623 TGAGGAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATCGTCGACGCCAACG 682
|| | ||||| |||||||| || || || |||||||||||||||||||| ||||| |||
Sbjct 599 TGCGTAAGTTTGGTCTCGGAGCCGATAACGTCCTCGACGCCAGAATCGTTGACGCTGACG 658
Query 683 GCCAAATCCTCGA-TCGCGCGGCAATGGGAGAAGACGTCTTCTGGGCGATTCGCGGCGGC 741
|| ||||| | || ||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 659 GCAAAATCTT-GAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATACGAGGCGGA 717
Query 742 GGCGGTGGTAGCTTCGGCGTGATA-TTGGCCTGGAAGATTAAGCTCGTCCCCGTTCCGGC 800
||||| || ||||||||||| || ||| ||||||| || || ||||| || || ||||
Sbjct 718 GGCGGAGGAAGCTTCGGCGTTATTCTTG-CCTGGAAAATCAAACTCGTTCCGGTGCCGGA 776
Query 801 GACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAAG-TTTTAT 859
| ||||||||| ||||| ||||||| |||||||||||||||||||||||| | |||| |
Sbjct 777 GGTCGTTACGGTGTTCACTGTCACGAGGACGCTTGAGCAAGACGGAACTAA-GCTTTTGT 835
Query 860 ACAAATGGGAACAAATCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTCATTATTT 919
|||| ||| ||||| | ||||||||||||||||| |||||||| || || || ||||||
Sbjct 836 ACAAGTGGCAACAAGTTGCTGATAAGCTTGACGAAGATCTCTTTATCCGTGTGATTATT- 894
Query 920 CA-CCGGCCAGTAAAACCACC-AA-ACCGG-GAAATCGAACCATCTCGA-TGTCGTACCA 974
|| ||| | || ||||| || || | | |||| |||| ||||| | | ||||||||
Sbjct 895 CAGCCGACGAGCAAAACT-CCGAAGAGCAAAGAAA--GAACTATCTCAACT-TCGTACCA 950
Query 975 AG-CTCAGTTTCTCGGAGACTCCAATCGGCTCTTGCAGGTGATGCAGAAG-AGTTTCCCT 1032
|| | || |||||||| ||| | ||| || | |||||||||||||| ||| ||||||||
Sbjct 951 AGGC-CAATTTCTCGGCGACGCAAATAGGTTGTTGCAGGTGATGCA-AAGGAGTTTCCCA 1008
Query 1033 GAG-TTAGGACTGACGAAGAAGGACTGCACAGAAATGAGCTGGATCAAATCAGTGATGTA 1091
|| || ||||| |||||||| || || ||| | |||||||||||||| || |||||
Sbjct 1009 CAGCTT-GGACTAACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTAATGTA 1067
Query 1092 CATTGCAGGTTTTCCAAACAGTGCAGC-ACCGGAAGCTTTACTAGCCGGAAAATCATTGT 1150
|||||| |||||||||| || ||| || | ||||||||||||| | || ||||| ||||
Sbjct 1068 CATTGCGGGTTTTCCAAGCACTGC-GCCATCGGAAGCTTTACTCGATGGGAAATCGTTGT 1126
Query 1151 TCAAGAATCACTTCAAAGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTT 1210
|||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |
Sbjct 1127 TCAAGAATTACTTCAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAATAGAAGGAT 1186
Query 1211 TAGAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCACCGTTAACGATATGGAACCCTT 1270
||||||| || ||||||| | |||||||||| || ||||| || || |||||||| ||||
Sbjct 1187 TAGAAGGGTTGTGGGAAAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTT 1246
Query 1271 ACGGAGGAATGATGTCGAGGATCTCC-GAGTCAGAGATACCTTTCCCTCATAGGAACGGG 1329
| |||||||||||| ||| || ||| ||| |||||| ||||||||| ||||||| |||
Sbjct 1247 ATGGAGGAATGATGGCGAAAAT-TCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGG 1305
Query 1330 ACATTGTTCAAGATTCAGTGGCTAAGCACG-TGGCAAGATGGGAAAGTGAGCGAGGA-AA 1387
|||||||||||||| || ||| | | | ||||||||||||||||||||||||| ||
Sbjct 1306 ACATTGTTCAAGATCCAATGGTTGA-CTTTATGGCAAGATGGGAAAGTGAGCGAGGCGAA 1364
Query 1388 GGCATATGAAGTGGATTAGGGAGATGTATAGTTACATGGAGCAGTATGTGTCGAAGAA-C 1446
| |||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1365 G-CATATGGATTGGATGAGGGAAATGTATAGTTACATGGAGCAGTATGTGTCGAA-AAGC 1422
Query 1447 CCGAGA-CAGGCGTATGTGAATTACAGGGATCTTGATTTGGGGACTAATG--AA-GGAGA 1502
|||||| | | |||||||||| || || |||||||||||||||| |||| || || ||
Sbjct 1423 CCGAGATCCG-CGTATGTGAACTATAGAGATCTTGATTTGGGGAGGAATGGTAAAGG-GA 1480
Query 1503 GACTGATGCTAGAGAGTGGGGTGC-TAAGTATTACAAAGGG-AATTTCGAGAGGTTGGTG 1560
| |||||| ||||| ||||| | ||| |||| ||| ||| ||||| || |||||||||
Sbjct 1481 G--TGATGCAAGAGAATGGGG-GAATAAATATTTCAA-GGGTAATTTTGAAAGGTTGGTG 1536
Query 1561 AAGATTAAGGGTGA-GTTTGATCCTGATAATTTCTTCAGGCATGAACAGAGTGTTCC 1616
||||||| | | | |||||||||||| ||||| || || |||||||| ||| ||||
Sbjct 1537 CAGATTAAAGCT-ACGTTTGATCCTGAGAATTTTTTTAGCCATGAACAAAGTATTCC 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5