BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34820.1
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901315 jgi|Araly1|901315|Al_scaffold_0004_1965 1332 0.0
> Ahg901315 jgi|Araly1|901315|Al_scaffold_0004_1965
Length=879
Score = 1332 bits (721), Expect = 0.0
Identities = 828/880 (94%), Gaps = 5/880 (1%)
Strand=Plus/Plus
Query 9 ATGTCCATGGATTGCTTAAGCTACTTCTTTAACTACGATCCTCCTGTCCAGCTCCAGGAT 68
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 ATGTCCATGGACTGCTTAAGCTACTTCTTTAACTACGATCCACCTGTCCAGCTCCGGGAT 60
Query 69 TGCTTTATTCCCGAGATGGATATGATTATCCCTGAAACCGATAGTTTCTTCTTCCAATCT 128
|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 61 TGCTTTATCCCCGAAATGGATATGATTATCCCTGAAACCGACAGTTTCCTCTTCCAATCT 120
Query 129 CAACCGCAACTGGAGTTTCATCAGCCATTGTTTCAAGAAGAAGCTCCTTCACAGACCCAC 188
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACCGCAACTGGAGTTTCATCAGCCATTGTTTCAAGAAGAAGCTCCTTCACAGACCCAC 180
Query 189 TTTGACCCTTTCTGCGACCAGTTTCTTTCTCCGCAAGAAATCTTTCTCCCTAACCCTAAA 248
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTTGACCCTTTTTGCGACCAGTTTCTTTCTCCCCAAGAAATCTTTCTCCCTAACCCTAAA 240
Query 249 AACGAAATCTTCAACGAAACACACGACCTCGATTTCTTTCTCCCCACGCCAAAACGCCAG 308
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 241 ACCGAAATCTTCAACGAAACACACGACCTAGATTTCTTACTCCCCACGCCAAAACGCCAG 300
Query 309 AGACTTGTTAACTCCAGCTACAATTGT---AACACTCAAAACCATTTCCAGAGCCGTAAC 365
| |||||||||||| |||||| ||||| ||||| || |||||||||||||||| ||||
Sbjct 301 AAACTTGTTAACTCGAGCTACCATTGTAACAACACCCACAACCATTTCCAGAGCCATAAC 360
Query 366 CCGAATTTCTTCGACCCTTTCGGCGACAC-TGATTTCGTTCCAGAATCTTGTACCTTCCA 424
||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||
Sbjct 361 CCGAATTTCTTCGACCCTTTCGGCGAC-CTTGATTTTGTTCCAGAAGCTTCTACCTTCCC 419
Query 425 GGAGTTTCGAGTTCCGGATTTCTCTTTAGCTTTCAAGGTAGGCCGGGGAGATCAAGATGA 484
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 420 GGAGTTTCGAGTTCCGGATTTCTCTTTAGCGTTCAAGGTAGGCCGAGGAGATCAAGACGA 479
Query 485 CTCAAAGAAACCGACGCTTTCATCTCAGAGCATCGCGGCTAGAGGGAGGAGAAGAAGAAT 544
| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 480 CACCAAGAAACCGACGCTTTCATCTCAGAGCATCGCGGCTCGAGAAAGGAGAAGAAGAAT 539
Query 545 TGCAGAGAAGACTCACGAGCTCGGAAAACTCATCCCCGGTGGCAATAAACTTAACACCGC 604
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 540 TGCGGAGAAGACTCACGAGCTCGGAAAACTCATCCCCGGTGGCCAGAAACTTAACACCGC 599
Query 605 CGAGATGTTCCAAGCCGCCGCTAAGTATGTCAAGTTTTTGCAGAGTCAAGTTGGGATTCT 664
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CGAGATGTTTCAAGCCGCCGCTAAGTATGTCAAGTTCTTGCAGAGTCAAGTTGGGATTCT 659
Query 665 CCAACTGATGCAGACCACAAAGAAGGGTAGCTCTAATGTGCAAATGGAAACTCAGTATTT 724
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 660 CCAACTGATGCAGACCACGAAGAAGGGTAGCTCTAATGTGCAAATGGAAACTCGGTTTTT 719
Query 725 GCTTGAATCGCAAGCAATCCAGGAGAAGTTATCAACAGAGGAAGTGTGTTTGGTACCGTG 784
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GCTTGAATCGCAAGCAGTCCAGGAGAAGCTATCAACAGAGGAAGTGTGTTTGGTACCGTG 779
Query 785 TGAAATGGTTCAAGATCTAACAACTGAAGAAACCATTTGCAGAACCCCGAATATTTCTCG 844
||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 780 TGAAATGGTTCAAGATCTAACAACTGAAGAAACCATTTGGAAAAACCCTAATATTTCTCG 839
Query 845 AGAAATCAACAAGTTACTGTCTAAACATCTGGCTAACTAG 884
||| ||||||||||||||||||||| ||||||||||||||
Sbjct 840 AGAGATCAACAAGTTACTGTCTAAAGATCTGGCTAACTAG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43612617048
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5