BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34825.1

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934083 jgi|Araly1|934083|scaffold_402071.1                        322    6e-88


> Ahg934083 jgi|Araly1|934083|scaffold_402071.1
Length=259

 Score =  322 bits (174),  Expect = 6e-88
 Identities = 201/214 (94%), Gaps = 2/214 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTCTATCCAAGAAAACAATTATGCAATCATTCGCTCTTATGATTATTCTATCTATC  60
            |||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  21   ATGGTTATATCCAAAAAAACAATTATGCAATCATTCGCTCTTATAATTATTATATCTATC  80

Query  61   GTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGAACCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   GTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGAACCT  140

Query  121  AAAGGTTGT-CCTCCTGGATCCCCAGCAAGTTGTAAAATGCAACCGGCTAATCCATATAA  179
            || |||||| || ||||| |||||| || |||| ||||||||||||||||||||||||||
Sbjct  141  AATGGTTGTGCC-CCTGGGTCCCCATCAGGTTGCAAAATGCAACCGGCTAATCCATATAA  199

Query  180  ACCAGGTTGTGAAGCTAGTCAAAGATGTCGTGGT  213
            ||||||||| ||||||||||||||||| ||||||
Sbjct  200  ACCAGGTTGCGAAGCTAGTCAAAGATGCCGTGGT  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7484899156


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5