BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34830.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482446 jgi|Araly1|482446|fgenesh2_kg.4__1506__AT2G34830.1 1712 0.0
Ahg952590 jgi|Araly1|952590|scaffold_92400001.1 401 6e-111
Ahg915648 jgi|Araly1|915648|Al_scaffold_0008_399 292 3e-78
Ahg915663 jgi|Araly1|915663|Al_scaffold_0008_414 285 6e-76
> Ahg482446 jgi|Araly1|482446|fgenesh2_kg.4__1506__AT2G34830.1
Length=1302
Score = 1712 bits (927), Expect = 0.0
Identities = 1106/1190 (93%), Gaps = 21/1190 (2%)
Strand=Plus/Plus
Query 1 ATGGACAACTTCCAAGGAGATCTAACAGACGTCGTACGAGGAATAGGATCAGGCCACGTG 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||
Sbjct 1 ATGGACAACTTCCAAGGAGATCTAACAGACGTTGTACGAGGAATCGGATCAGGACACATG 60
Query 61 TCACCATCTCCTGGACCACCGGAAGGTCCATCTCCGAGCAGCATGTCTCCGCCGCCAACA 120
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCATCATCCCCTGGACCACCGGAAGGTCCATCTCCGAGCAGCTTGTCTCCGCCGCCAACA 120
Query 121 TCAGATCTCCACGTGGAATTCCCCTCCGCCGCTACTTCTGCC-AGCTGTCTCGCAAATCC 179
||||||||||||||||| ||||||||||||||| ||||| || | |||||| |||||||
Sbjct 121 TCAGATCTCCACGTGGATTTCCCCTCCGCCGCTGCTTCTACCTA-CTGTCTAACAAATCC 179
Query 180 CTTCGGAGACCCGTTCGTAAGCATGA-AGGATCCTCTCATCCACCTCCCGGCC-A----- 232
|||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 180 CTTCGGAGACCCGTTCGTAAGCATGACA-GACCCTCTCATCCACCTCCCGGCCAACTCCG 238
Query 233 GCTACATCTCCGGCGCCGGTGATAATAAAAGCAACAAAAGTTTTGCAATCTTTCCAAAGA 292
||||| | ||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 239 GCTACTTATCCGGCGCCGGAGATAACAAAAGCAACAACAGTTTTGCAATCTTTCCAAAGG 298
Query 293 TTTTTGAGGATGATCATATTAAGAGTCAATGCAGTGTCTTCCCAAGAATTAAGATCTCGC 352
||||||||||||||||||| |||||||||||||||| |||||||||||| | |||| |||
Sbjct 299 TTTTTGAGGATGATCATATCAAGAGTCAATGCAGTGGCTTCCCAAGAATCAGGATCACGC 358
Query 353 AAAGTAACAAT-ATCCACGATGCCTCCACGTGTAATTCTCCGGCCATAACCGTCTCCTCT 411
|||||||| || ||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 359 AAAGTAAC-ATCATCCACGATGCCTCCACGTGTAATTCTCCGGCCAT-A--GCCTCCGCC 414
Query 412 GCCGCCGTAGCAGCTTCGCCGTGGGGCATGATCAACGTTAATACCACTAACAGTCCAAGA 471
||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 415 GCCGCCGCAGCAGCTTCGCCGTGGGGGATGATCAACGTTGATACCACTAACAATCCAAGA 474
Query 472 AACTGTTTACTTGTCGATAATAATAACAACACGTCATCATGCTCACAGGTTCAGATCTCT 531
||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 475 AACTGTTTACTGGTCGATAATAATAACAACACGTCATCATCCTCACAGATTCAGATCTCT 534
Query 532 TCTTCCCCTCGGAATCTCGGAATTAAGAGAAGGAAGAGCCAGGCAAAGAAAGTGGTGTGC 591
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 535 TCTTTCCCTCGGAATCTCGGGATAAAGAGAAGGAAGAGCCAGGCAAAGAAAGTGGTGTGC 594
Query 592 ATACCGGCTCCAGCCGCTATGAACAGCCGGTCCAGTGGAGAAGTTGTTCCGTCTGATCTA 651
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 ATACCGGCTCCAGCCGCTATGAATAGCCGGTCCAGTGGAGAAGTTGTTCCGTCTGATCTA 654
Query 652 TGGGCTTGGCGAAAGTACGGTCAAAAACCTATCAAAGGTTCTCCTTATCCAAGGGGTTAC 711
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 TGGGCTTGGCGAAAGTACGGTCAAAAACCCATCAAAGGTTCTCCTTATCCAAGGGGTTAC 714
Query 712 TACAGATGTAGCAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTAGCCGCACT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TACAGATGTAGCAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTAGCCGCACT 774
Query 772 GATCCAAACATGTTAGTCATTACTTACACCTCTGAGCATAACCACCCATGGCCTACTCAA 831
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 GATCCAAACATGTTAGTCATTACTTACACCTCTGAGCATAACCATCCATGGCCTACTCAA 834
Query 832 CGCAACGCTCTCGCAGGTTCCACTCGTTCCTC-T--TCCTCCTCCTCTTTAAACCCTTCT 888
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 835 CGCAACGCTCTCGCCGGTTCCACTCGTTCCTCCTCCTCCTCCTCCTCTTTAAACCCTTCT 894
Query 889 TCCAAATCCTCAACCGCAGCCGCCACTA---CTTCTCCCTCATCCAGAGTTTTCCAAAAC 945
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 895 TCCAAATCCTCAACCGCAGCCGCCACTAGTACTTCTCCCTCATCCAGAGTTTCCCACGAC 954
Query 946 AACAGCAGCAAAGACGAACCCAATAACTCCAACTTGCCTTCCTCTTCCACTCATCCTCCT 1005
|||| | |||| ||||||| ||||| ||| |||| |||||||||||||||| |||||||
Sbjct 955 AACAATACCAAAAACGAACCAAATAATTCCCACTTTCCTTCCTCTTCCACTCTTCCTCCT 1014
Query 1006 TTTGACGCCGCCGCAATTAAGGAGGAGAACGTGGAAGAGCGTCAGGAAAAGATGGAGTTC 1065
| || ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1015 TATGTTGCCGCCGCAGTTAAGGAGGAGAACTTGGAAGAGCGTCAGGAAAATATGGAGTTC 1074
Query 1066 GATTATAATGACGTTGAAAATACCTATAGACCGGAGTTGTTGCAAGAGTTTCAACATCAG 1125
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1075 GATTATAATGACGTTGAAGATACATATAGACCGGAGTTGTTGCGAGAGTTTCAACATCAG 1134
Query 1126 CCGGAGGATTTCTTTGCCGATCTCGACGAGCTTGAGGGAGATTCTTTGAC 1175
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 CCGGAGGATTTCTTCGCCGATCTCGACGAGCTTGAGGGAGATTCTTTGAC 1184
Score = 158 bits (85), Expect = 1e-37
Identities = 107/118 (91%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1218 CAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACGACGACGAGTCCTCAAGGTC 1277
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1185 CAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACTCCTCCTCCTCCTCAAGGTC 1244
Query 1278 GTTATAAATATTGTTGTTAATGTATACATAGAAATGAAATTATTCATGTAATTCGTTT 1335
|||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1245 GTTATAAACATTCTTGTTAATGTATACATAGATATAAAATTATTCATGTAATTCGTTT 1302
> Ahg952590 jgi|Araly1|952590|scaffold_92400001.1
Length=270
Score = 401 bits (217), Expect = 6e-111
Identities = 249/265 (94%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 1037 TGGAAGAGCGTCAGGAAAAGATGGAGTTCGATTATAATGACGTTGAAAATACCTATAGAC 1096
||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 3 TGGAAGAGCGTAAGGAAAATATGGAGTTCGATTATAATGACGTTGAAGATACATATAGAC 62
Query 1097 CGGAGTTGTTGCAAGAGTTTCAACATCAGCCGGAGGATTTCTTTGCCGATCTCGACGAGC 1156
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CGGAGTTGTTGCGAGAGTTTCAACATCAGCCGGAGGATTTCTTTGCCGATCTCGACGAGC 122
Query 1157 TTGAGGGAGATTCTTTGACTATGTTGCTCTCTCACAGTAGCGGCGGAGGCAACATGGAAA 1216
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 TTGAGGGAGATTCTTTGACTATGTTGCTCTCTCACAGTAGCGGCGGAGTTAACATGGAAA 182
Query 1217 ACAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACGACGACGAGTCCTCAAGGT 1276
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 183 ACAAAACGACGATTCCAGACGTTTTTAGTGATTTCTTTGACTCCTCCTCCTCCTCAAGGT 242
Query 1277 CGTTATAAATATTGTTGTTAATGTA 1301
||||||||| ||| |||||||||||
Sbjct 243 CGTTATAAACATTCTTGTTAATGTA 267
> Ahg915648 jgi|Araly1|915648|Al_scaffold_0008_399
Length=4014
Score = 292 bits (158), Expect = 3e-78
Identities = 206/230 (90%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 644 CTGATCTATGGGCTTGGCGAAAGTACGGTCAAAAACCTATCAAAGGTTCTCCTTATCCAA 703
|||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3437 CTGACCAATGGGTTTGGCGAAAGTACGGTCAAAAACCCATCAAAGGTTCTCCTTATCCAA 3496
Query 704 GGGGTTACTACAGATGTAGCAGCTCAAAAGGTTGTTCAGCTAGGAAACAAGTCGAACGTA 763
|| |||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 3497 GGAATTACTACAAATGTACCAGCTCCATAGGTTGTTCAGCTAGGAAACAAGTCGAACGTA 3556
Query 764 GCCGCACTGATCCAAACATGTTAGTCATTACTTACACCTCTGAGCATAACCACCCATGGC 823
||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 3557 GCCGCACCGATCCAAACATGTTAGTCATTACTTACATCTCTGAGCATAACCATCCATCCC 3616
Query 824 CTACTCAACGCAACGCTCTCGCAGGTTCCACTCGTTCCTCTTCCTCCTCC 873
| ||||||||||| ||||| || || ||||||| |||| | || ||||||
Sbjct 3617 CCACTCAACGCAATGCTCTTGCCGGCTCCACTCATTCCCCGTCATCCTCC 3666
> Ahg915663 jgi|Araly1|915663|Al_scaffold_0008_414
Length=4083
Score = 285 bits (154), Expect = 6e-76
Identities = 225/259 (87%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 615 CAGCCGGTCCAGTGGAGAAGTTGTTCCGTCTGATCTATGGGCTTGGCGAAAGTACGGTCA 674
|||||||||||||| |||| | | | |||| ||||||| |||||||||||||||| |
Sbjct 3486 CAGCCGGTCCAGTGAAGAA---G-T-AG-CTGACCTATGGGTTTGGCGAAAGTACGGTAA 3539
Query 675 AAAACCTATCAAAGGTTCTCCTTATCCAAGGGGTTACTACAGATGTAGCAGCTCAAAAGG 734
|||||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||
Sbjct 3540 AAAACCCCTCAAAGGTTCTCCTTATCCAAGGAATTACTACAAATGTACCAGCTCGAAAGG 3599
Query 735 TTGTTCAGCTAGGAAACAAGTCGAACGTAGCCGCACTGATCCAAACATGTTAGTCATTAC 794
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 3600 TTGTTCAGCTAGGAAACAAATCGAACGTAGCCGCACCGATCCAAACATGTTAGTCATTAC 3659
Query 795 TTACACCTCTGAGCATAACCACCCATGGCCTACTCAACGCAACGCTCTCGCAGGTTCCAC 854
||||| | ||||||||||||| |||| || ||||||||||| ||||| || || |||||
Sbjct 3660 TTACATCACTGAGCATAACCATCCATCCCCCACTCAACGCAATGCTCTTGCCGGCTCCAC 3719
Query 855 TCGTTCCTCTTCCTCCTCC 873
|| |||| | || ||||||
Sbjct 3720 TCATTCCCCGTCATCCTCC 3738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5