BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34850.1 Length=1114 Score E Sequences producing significant alignments: (Bits) Value Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976 1515 0.0 Ahg922129 jgi|Araly1|922129|scaffold_103410.1 996 0.0 > Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976 Length=1254 Score = 1515 bits (820), Expect = 0.0 Identities = 910/954 (95%), Gaps = 4/954 (0%) Strand=Plus/Plus Query 1 CAATCTATCTCGAGGGAACCTCGGTGCAGTCAAGATCTTGCAACAACTGTTTCCGGAACC 60 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 300 CAATCTATCTCGAGGGAACCTCGGTGCAATCAAGATTTTGCAACAACTGTTTCCGGAACC 359 Query 61 TGGAAAGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAATGCTGTTAACAAAATATT 120 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 TGGAAGGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAAAGCTGTTAACAAAATATT 419 Query 121 TTCTGAAAACGCATTTGACGCTGTGATGCATTTTGCTGCTGTTGCTTATGTTGGAGAAAG 180 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 420 TTCTGAAAACGCATTTGACGCTGTGATGCATTTCGCGGCTGTTGCTTATGTTGGAGAAAG 479 Query 181 CACACAGTTTCCTCTCAA-TATTATCACAATATCACATCGAACACATTGGTAGTTTTAGA 239 |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 480 CACACAATTTCCTCTCAAGTATTATCACAATATTACATCGAACACATTGGTAGTTTTAGA 539 Query 240 GACAATGGCTGCTCATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 299 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GACAATGGCTGCTTATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 599 Query 300 AGAGCCTGAGAAAATGCCAATAACAGAGGAAACTCCACAGGTTCCAATCAATCCATATGG 359 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 600 AGAGCCTGAGAAGATGCCAATAACAGAGGAAACTCCTCAGGTTCCAATCAATCCATATGG 659 Query 360 AAAGGCTAAAAAGATGGCAGAAGATATCATCTTGGATTTCTCCAAGAATTCTATTATGGC 419 ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 660 AAAGGCTAAGAAGATGGCAGAAGATATCATCTTAGATTTCTCCAAGAATTCTAATATGGC 719 Query 420 AGTTATGATCC-TAAG--ATATTTCAATGTGATTGGGTCTGATCCTGAGGGTAGACTAGG 476 ||||||||||| | | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 720 AGTTATGATCCGGAGGTTATATTTCAATGTGATTGGGTCTGATCCTGAGGGCAGACTAGG 779 Query 477 TGAAGCTCCAAGACCTGAACTCAGTGAGCATGGACGGATCTCTGGTGCTTGCTTTGATGC 536 |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct 780 TGAAGCTCCAAGACCTGAACTCAGAGAGCATGGACGAATCTCTGGTGCTTGCTTTGACGC 839 Query 537 TGCACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGG 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGCACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGG 899 Query 597 GACTTGTGTACGTGATTACATTGATGTCACCGACTTGGTTGATGCTCATGTTAAAGCTCT 656 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 900 GACTTGTGTACGTGATTACATTGATGTCACCGACTTGGATGATGCTCATGTTAAAGCTCT 959 Query 657 TGAAAAGGCGAAACCCCGCAAAGTTGGTATCTTCAATGTTGGTACCGGGAAAGGTAGCTC 716 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 960 TGAAAAGGCGAAACCCCGCAAAGTTGGAATCTTTAATGTTGGTACCGGGAAAGGTAGCAC 1019 Query 717 GGTGAAGGAGTTTGTGGAAGCGTGCAAAAAGGCGACCGGCGTTGATATAAAAGTCGATTA 776 ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| Sbjct 1020 GGTGAAGGAGTTTGTGGAAGCATGCAAAAAGGCGACTGGAGTTGATATAAAAGTTGATTA 1079 Query 777 CTTGGAAAGACGGGCAGGAGATTACGCAGAGGTTTACAGCGATCCAAGAAAAATCAAAGA 836 ||| |||||||||||||||||||| || |||||||||||||| ||||| || |||| ||| Sbjct 1080 CTTAGAAAGACGGGCAGGAGATTATGCCGAGGTTTACAGCGACCCAAGTAAGATCAGAGA 1139 Query 837 AGAGCTGAATTGGACAGCTAAGCACACCAATCTTCAAGAAAGTTTAAAGATGGCATGGAG 896 ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1140 AGAGCTGAATTGGACAGCTAAGCACACAAATCTTCAAGAAAGTTTAAAGACAGCATGGAG 1199 Query 897 ATGGCAAAAGCTTCATCGCAGTGGCTATGGATCTTCTTCCTTGGTTTCTGCATA 950 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1200 ATGGCAAAAGCTTCATCACAATGGCTATGGATCTTCTTCCTTGGTTTCTGCATA 1253 > Ahg922129 jgi|Araly1|922129|scaffold_103410.1 Length=1297 Score = 996 bits (539), Expect = 0.0 Identities = 803/931 (86%), Gaps = 15/931 (2%) Strand=Plus/Plus Query 1 CAATCTATCTCGAGGGAACCTCGGTGCAGTCAAGATCTTGCAACAACTGTTTCCGGAACC 60 ||||||||| || ||||| || || ||||||||||| |||||| |||||||||| ||||| Sbjct 323 CAATCTATCACGTGGGAATCTTGGCGCAGTCAAGATTTTGCAAGAACTGTTTCCTGAACC 382 Query 61 TGGAAAGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAATGCTGTTAACAAAATATT 120 ||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 383 TGGAAGGCTTCAATTTATTTATGCTGATCTTGGAGATGCAAAGGCTGTCAACAAGATATT 442 Query 121 TTCTGAAAACGCATTTGACGCTGTGATGCATTTTGCTGCTGTTGCTTATGTTGGAGAAAG 180 | || ||||| ||||||||||| |||||||| || |||||||| |||||||| ||||| Sbjct 443 CACAGAGAACGCCTTTGACGCTGTAATGCATTTCGCCGCTGTTGCATATGTTGGGGAAAG 502 Query 181 CACACAGTTTCCTCTCAA-TATTATCACAATATCACATCGAACACATTGGTAGTTTTAGA 239 |||||| || ||||| || |||||||||||||| ||||||||||| ||||| || ||||| Sbjct 503 CACACAATTCCCTCTTAAGTATTATCACAATATTACATCGAACACTTTGGTCGTATTAGA 562 Query 240 GACAATGGCTGCTCATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 299 ||||||||| |||||||| || ||||||||||||||||||||||| ||||| || ||||| Sbjct 563 GACAATGGCCGCTCATGGAGTAAAGACTTTGATATATTCAAGCACTTGTGCAACGTATGG 622 Query 300 AGAGCCTGAGAAAATGCCAATAACAGAGGAAACTCCACAGGTTCCAATCAATCCATATGG 359 |||||||| | |||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 623 GGAGCCTGATACTATGCCAATTACAGAGGAAACTCCTCAGGTGCCAATCAATCCATATGG 682 Query 360 AAAGGCTAAAAAGATGGCAGAAGATATCATCTTGGATTTCTCCAAGAATTCTATTATGGC 419 ||||| || |||||||||||||||||||| ||||||||||| || || || | |||||| Sbjct 683 TAAGGCCAAGAAGATGGCAGAAGATATCATTTTGGATTTCTCGAAAAACTCAAATATGGC 742 Query 420 AGTTATGATCCTAAGATATTTCAATGTGATTGGGTCTGATCCTGAGGGTAGACTAGGTGA 479 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 743 AGTTATGATCCTAAGATATTTCAATGTGATTGGGTCCGATCCAGAGGGCAGATTGGGTGA 802 Query 480 AGCTCCAAGACCTGAACT-CAGTGAGCATGGACGGATCTCTGGTGCTTGCTTTGATGCTG 538 ||| ||||| |||||||| | ||||||||||||| ||||| ||||||||||||||||| | Sbjct 803 AGCCCCAAGGCCTGAACTGC-GTGAGCATGGACGCATCTCCGGTGCTTGCTTTGATGCAG 861 Query 539 CACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGGGA 598 |||| |||||||| || || || ||||| ||||||||||||||||| || | |||||| | Sbjct 862 CACGTGGCATCATGCCTGGCCTACAGATCAAAGGAACAGACTACAAAACCGCTGATGGAA 921 Query 599 CTTGTGTACGTGATTACATTGATGTCACCGACTTGGTTGATGCTCATGTTAAAGCTCTTG 658 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 922 CTTGCGTACGTGATTACATTGATGTCACTGACTTGGTTGATGCTCATGTTAAAGCTCTTC 981 Query 659 AAAAGGCGAAACCCCGCAAAGTTGGTATCTTCAATGTTGGTACCGGGAAAGGTAGCTCGG 718 | ||||| |||||||| |||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 982 AGAAGGCAAAACCCCGTAAAGTTGGAATCTACAATGTTGGCACCGGGAAAGGTAGCTCGG 1041 Query 719 TGAAGGAGTTTGTGGAAGCGTGCAA-AAAGGCGACCGGCGTTGATATAAA-AGTCGATTA 776 |||| |||||||| || |||||||| |||| | || || ||||| || || | |||| || Sbjct 1042 TGAAAGAGTTTGTTGAGGCGTGCAAGAAAG-CAACTGGTGTTGAGATCAAGA-TCGAATA 1099 Query 777 CTTGGAAAGACGGGCAGGAGATTACGCAGAGGTTTACAGCGATCCAAGAAAAATCAAAGA 836 |||| || || ||||| |||||||| ||||||||||| || || || || |||| || Sbjct 1100 CTTGCCTAGGCGTGCAGGTGATTACGCTGAGGTTTACAGTGACCCGAGCAAGATCAG-GA 1158 Query 837 AG-AGCTGAATTGGACAGCTAAGCACACCAATCTTCAA-GAAAGT-TTAAAGA-TGGCAT 892 || | || |||||||||||||||||||| ||||| ||| || ||| || | || || ||| Sbjct 1159 AGGAACTTAATTGGACAGCTAAGCACACTAATCT-CAAAGAGAGTCTTGA-GACTG-CAT 1215 Query 893 GGAGATGGCAAAAGCTTCATCGCAGTGGCTA 923 |||||||||| ||||| || || | |||||| Sbjct 1216 GGAGATGGCAGAAGCTGCACCGTAATGGCTA 1246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41515856613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5