BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34850.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976 1515 0.0
Ahg922129 jgi|Araly1|922129|scaffold_103410.1 996 0.0
> Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976
Length=1254
Score = 1515 bits (820), Expect = 0.0
Identities = 910/954 (95%), Gaps = 4/954 (0%)
Strand=Plus/Plus
Query 1 CAATCTATCTCGAGGGAACCTCGGTGCAGTCAAGATCTTGCAACAACTGTTTCCGGAACC 60
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 300 CAATCTATCTCGAGGGAACCTCGGTGCAATCAAGATTTTGCAACAACTGTTTCCGGAACC 359
Query 61 TGGAAAGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAATGCTGTTAACAAAATATT 120
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TGGAAGGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAAAGCTGTTAACAAAATATT 419
Query 121 TTCTGAAAACGCATTTGACGCTGTGATGCATTTTGCTGCTGTTGCTTATGTTGGAGAAAG 180
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 420 TTCTGAAAACGCATTTGACGCTGTGATGCATTTCGCGGCTGTTGCTTATGTTGGAGAAAG 479
Query 181 CACACAGTTTCCTCTCAA-TATTATCACAATATCACATCGAACACATTGGTAGTTTTAGA 239
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CACACAATTTCCTCTCAAGTATTATCACAATATTACATCGAACACATTGGTAGTTTTAGA 539
Query 240 GACAATGGCTGCTCATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GACAATGGCTGCTTATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 599
Query 300 AGAGCCTGAGAAAATGCCAATAACAGAGGAAACTCCACAGGTTCCAATCAATCCATATGG 359
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 AGAGCCTGAGAAGATGCCAATAACAGAGGAAACTCCTCAGGTTCCAATCAATCCATATGG 659
Query 360 AAAGGCTAAAAAGATGGCAGAAGATATCATCTTGGATTTCTCCAAGAATTCTATTATGGC 419
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 660 AAAGGCTAAGAAGATGGCAGAAGATATCATCTTAGATTTCTCCAAGAATTCTAATATGGC 719
Query 420 AGTTATGATCC-TAAG--ATATTTCAATGTGATTGGGTCTGATCCTGAGGGTAGACTAGG 476
||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AGTTATGATCCGGAGGTTATATTTCAATGTGATTGGGTCTGATCCTGAGGGCAGACTAGG 779
Query 477 TGAAGCTCCAAGACCTGAACTCAGTGAGCATGGACGGATCTCTGGTGCTTGCTTTGATGC 536
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 780 TGAAGCTCCAAGACCTGAACTCAGAGAGCATGGACGAATCTCTGGTGCTTGCTTTGACGC 839
Query 537 TGCACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGG 899
Query 597 GACTTGTGTACGTGATTACATTGATGTCACCGACTTGGTTGATGCTCATGTTAAAGCTCT 656
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 GACTTGTGTACGTGATTACATTGATGTCACCGACTTGGATGATGCTCATGTTAAAGCTCT 959
Query 657 TGAAAAGGCGAAACCCCGCAAAGTTGGTATCTTCAATGTTGGTACCGGGAAAGGTAGCTC 716
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 960 TGAAAAGGCGAAACCCCGCAAAGTTGGAATCTTTAATGTTGGTACCGGGAAAGGTAGCAC 1019
Query 717 GGTGAAGGAGTTTGTGGAAGCGTGCAAAAAGGCGACCGGCGTTGATATAAAAGTCGATTA 776
||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||
Sbjct 1020 GGTGAAGGAGTTTGTGGAAGCATGCAAAAAGGCGACTGGAGTTGATATAAAAGTTGATTA 1079
Query 777 CTTGGAAAGACGGGCAGGAGATTACGCAGAGGTTTACAGCGATCCAAGAAAAATCAAAGA 836
||| |||||||||||||||||||| || |||||||||||||| ||||| || |||| |||
Sbjct 1080 CTTAGAAAGACGGGCAGGAGATTATGCCGAGGTTTACAGCGACCCAAGTAAGATCAGAGA 1139
Query 837 AGAGCTGAATTGGACAGCTAAGCACACCAATCTTCAAGAAAGTTTAAAGATGGCATGGAG 896
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1140 AGAGCTGAATTGGACAGCTAAGCACACAAATCTTCAAGAAAGTTTAAAGACAGCATGGAG 1199
Query 897 ATGGCAAAAGCTTCATCGCAGTGGCTATGGATCTTCTTCCTTGGTTTCTGCATA 950
||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1200 ATGGCAAAAGCTTCATCACAATGGCTATGGATCTTCTTCCTTGGTTTCTGCATA 1253
> Ahg922129 jgi|Araly1|922129|scaffold_103410.1
Length=1297
Score = 996 bits (539), Expect = 0.0
Identities = 803/931 (86%), Gaps = 15/931 (2%)
Strand=Plus/Plus
Query 1 CAATCTATCTCGAGGGAACCTCGGTGCAGTCAAGATCTTGCAACAACTGTTTCCGGAACC 60
||||||||| || ||||| || || ||||||||||| |||||| |||||||||| |||||
Sbjct 323 CAATCTATCACGTGGGAATCTTGGCGCAGTCAAGATTTTGCAAGAACTGTTTCCTGAACC 382
Query 61 TGGAAAGCTTCAATTCATTTATGCTGATCTTGGAGATGCAAATGCTGTTAACAAAATATT 120
||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 383 TGGAAGGCTTCAATTTATTTATGCTGATCTTGGAGATGCAAAGGCTGTCAACAAGATATT 442
Query 121 TTCTGAAAACGCATTTGACGCTGTGATGCATTTTGCTGCTGTTGCTTATGTTGGAGAAAG 180
| || ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||
Sbjct 443 CACAGAGAACGCCTTTGACGCTGTAATGCATTTCGCCGCTGTTGCATATGTTGGGGAAAG 502
Query 181 CACACAGTTTCCTCTCAA-TATTATCACAATATCACATCGAACACATTGGTAGTTTTAGA 239
|||||| || ||||| || |||||||||||||| ||||||||||| ||||| || |||||
Sbjct 503 CACACAATTCCCTCTTAAGTATTATCACAATATTACATCGAACACTTTGGTCGTATTAGA 562
Query 240 GACAATGGCTGCTCATGGTGTGAAGACTTTGATATATTCAAGCACATGTGCTACTTATGG 299
||||||||| |||||||| || ||||||||||||||||||||||| ||||| || |||||
Sbjct 563 GACAATGGCCGCTCATGGAGTAAAGACTTTGATATATTCAAGCACTTGTGCAACGTATGG 622
Query 300 AGAGCCTGAGAAAATGCCAATAACAGAGGAAACTCCACAGGTTCCAATCAATCCATATGG 359
|||||||| | |||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 623 GGAGCCTGATACTATGCCAATTACAGAGGAAACTCCTCAGGTGCCAATCAATCCATATGG 682
Query 360 AAAGGCTAAAAAGATGGCAGAAGATATCATCTTGGATTTCTCCAAGAATTCTATTATGGC 419
||||| || |||||||||||||||||||| ||||||||||| || || || | ||||||
Sbjct 683 TAAGGCCAAGAAGATGGCAGAAGATATCATTTTGGATTTCTCGAAAAACTCAAATATGGC 742
Query 420 AGTTATGATCCTAAGATATTTCAATGTGATTGGGTCTGATCCTGAGGGTAGACTAGGTGA 479
|||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | |||||
Sbjct 743 AGTTATGATCCTAAGATATTTCAATGTGATTGGGTCCGATCCAGAGGGCAGATTGGGTGA 802
Query 480 AGCTCCAAGACCTGAACT-CAGTGAGCATGGACGGATCTCTGGTGCTTGCTTTGATGCTG 538
||| ||||| |||||||| | ||||||||||||| ||||| ||||||||||||||||| |
Sbjct 803 AGCCCCAAGGCCTGAACTGC-GTGAGCATGGACGCATCTCCGGTGCTTGCTTTGATGCAG 861
Query 539 CACGAGGCATCATTCCCGGGCTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGGGA 598
|||| |||||||| || || || ||||| ||||||||||||||||| || | |||||| |
Sbjct 862 CACGTGGCATCATGCCTGGCCTACAGATCAAAGGAACAGACTACAAAACCGCTGATGGAA 921
Query 599 CTTGTGTACGTGATTACATTGATGTCACCGACTTGGTTGATGCTCATGTTAAAGCTCTTG 658
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 922 CTTGCGTACGTGATTACATTGATGTCACTGACTTGGTTGATGCTCATGTTAAAGCTCTTC 981
Query 659 AAAAGGCGAAACCCCGCAAAGTTGGTATCTTCAATGTTGGTACCGGGAAAGGTAGCTCGG 718
| ||||| |||||||| |||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 982 AGAAGGCAAAACCCCGTAAAGTTGGAATCTACAATGTTGGCACCGGGAAAGGTAGCTCGG 1041
Query 719 TGAAGGAGTTTGTGGAAGCGTGCAA-AAAGGCGACCGGCGTTGATATAAA-AGTCGATTA 776
|||| |||||||| || |||||||| |||| | || || ||||| || || | |||| ||
Sbjct 1042 TGAAAGAGTTTGTTGAGGCGTGCAAGAAAG-CAACTGGTGTTGAGATCAAGA-TCGAATA 1099
Query 777 CTTGGAAAGACGGGCAGGAGATTACGCAGAGGTTTACAGCGATCCAAGAAAAATCAAAGA 836
|||| || || ||||| |||||||| ||||||||||| || || || || |||| ||
Sbjct 1100 CTTGCCTAGGCGTGCAGGTGATTACGCTGAGGTTTACAGTGACCCGAGCAAGATCAG-GA 1158
Query 837 AG-AGCTGAATTGGACAGCTAAGCACACCAATCTTCAA-GAAAGT-TTAAAGA-TGGCAT 892
|| | || |||||||||||||||||||| ||||| ||| || ||| || | || || |||
Sbjct 1159 AGGAACTTAATTGGACAGCTAAGCACACTAATCT-CAAAGAGAGTCTTGA-GACTG-CAT 1215
Query 893 GGAGATGGCAAAAGCTTCATCGCAGTGGCTA 923
|||||||||| ||||| || || | ||||||
Sbjct 1216 GGAGATGGCAGAAGCTGCACCGTAATGGCTA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5