BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34860.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482448 jgi|Araly1|482448|fgenesh2_kg.4__1508__AT2G34860.1 1086 0.0
> Ahg482448 jgi|Araly1|482448|fgenesh2_kg.4__1508__AT2G34860.1
Length=816
Score = 1086 bits (588), Expect = 0.0
Identities = 759/837 (91%), Gaps = 29/837 (3%)
Strand=Plus/Plus
Query 17 aaaaaTGGCGGCATCATCATCTCATCTCTTCGCACTCCCTTCGCCTGCTTCTCCG-TT-T 74
|||||||||||||||||||||||||||||||||||||||| |||| || | || || |
Sbjct 1 AAAAATGGCGGCATCATCATCTCATCTCTTCGCACTCCCTACGCCGGC--AT-CGTTTCT 57
Query 75 C-TATCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCA 133
| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 58 CTTAGCTGCACCAAACAGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGACAATCA 117
Query 134 GAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCACAAAGCCCAGGGAGA 193
||||||||| || ||||||| ||||||||| || ||||||||||||||| ||||||| ||
Sbjct 118 GAGCTTCGATTCGAACGATTTGGATTCTTCTTCGGAGACTACCCACAAACCCCAGGGGGA 177
Query 194 TCAGAAATCAGTGTCACGGAGACAGTGGATGACGGCATGTGTGTGCGCATCTGCAGCTTT 253
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 178 TCAGAAATCGGTGTCACGGAGACACTGGATGACGGCATGTGTGTGCGCATCCGCAGCTTT 237
Query 254 AATTAGCAATTCTTATACCTTTGTCTCTGTACAAAGCGCAGCCGCTTTAGACAAGAAACC 313
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATTAACAATTCTTACACCTTTGTCTCTGTACAAAGCGCAGCCGCTTTAGACAAGAAACC 297
Query 314 AGGAGGTTCATGTCGT-AACTGCCAG-GGCAGTGGTGCTGTTCTTTGTGATATGTGTGGT 371
|||||||||||||| | | | || || | || || | | ||||||||||||||
Sbjct 298 AGGAGGTTCATGTC-TCATGTTTAAGCGG-TTTTGTTATGATATAGGTGATATGTGTGGT 355
Query 372 GGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACG 431
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 356 GGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCCAAAGATGTATACGAGTTTACG 415
Query 432 GAATGTCCAAACTGTTACGGTCGAGGTAAGCTTGTTTGTCCGGTCTGTTTAGGTACAGGT 491
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 416 GAATGTCCAAACTGTTACGGTCGGGGTAAGCTTGTTTGTCCGGTCTGTTTGGGTACAGGT 475
Query 492 TTACCAAACAACAAAGGCCTTCTTAGAAGGCCTGGTGCTCGTGAGCTACTCGAAAAGATG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTACCAAACAACAAAGGCCTTCTTAGAAGGCCTGGTGCTCGTGAGCTACTCGAAAAGATG 535
Query 552 TACAATGGTCGGCTTCTTCCTGATTCATGAGAAGATTGTTACTGCAAATATGATTTTAAG 611
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 TACAATGGTCGGCTTCTTCCTGATTCATGAGAAGATTGTTACTGCAAATATGCTTTTAAG 595
Query 612 CACAGAGCCAGTAGACATGATGATAGAAGCGGATGAAAACTTACACATTGAGGATGCATG 671
||||||||| |||||||||||| | || | | | ||||||||||||||| ||
Sbjct 596 CACAGAGCCT-TAGACATGATGA-A-AA-C---T------T-ACACATTGAGGATGCCTG 641
Query 672 GAAAGCTATA--GAAGAATGTATCGAATTCAACATGTTTTTATAATGCTGCTAGGTTTGT 729
|| ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 642 GATAGCTATATAGAAGAATGTAACGAATTCAACATGTTTTTGTAATGCTGCTAGGTTTGT 701
Query 730 GTTGTAAATTCTATAAACATAAAACTTTCCTTCTTCCCCATACAGACTAGACGAATC-AG 788
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |
Sbjct 702 GTTGTAAATTCTATAAACCTAAAACTTTCCTTCTTCCCCATACAGAGTAGACGA-TCCA- 759
Query 789 TTTCGACTAAGATACTCACTCACTCACCTATGCATTTAGGCATATAGAATCACACAC 845
||||||| | ||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 760 TTTCGACGACGATACACACTCAGTCACTTATGCATTTAGGCATATAGAATCACACAC 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5