BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34870.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482450 jgi|Araly1|482450|fgenesh2_kg.4__1510__AT2G34870.1 761 0.0
> Ahg482450 jgi|Araly1|482450|fgenesh2_kg.4__1510__AT2G34870.1
Length=530
Score = 761 bits (412), Expect = 0.0
Identities = 478/509 (94%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 9 CAAAAGCATATAAGCAAAAAATACAAAACAAATTATGGCTTCTTCATCACTCATCAGTGT 68
||||||||||||||||||||| || ||||||| |||||||||||||||| ||| || |||
Sbjct 1 CAAAAGCATATAAGCAAAAAA-AC-AAACAAACTATGGCTTCTTCATCAGTCACCACTGT 58
Query 69 AGCCCTAACCCTAATCTTGATCTTCCACCTCATGCCGGAAACAACCGTCGCTCGTCGTCT 128
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 59 AGCCCTAACCCTAATCTTGATCTTCCACCTCACGCCGGAAACAACCGTAGCTCGTCGTCT 118
Query 129 -TACTGATCAGAAGCCGAGTGATGAAGTAGTCACCACCACTACCGACGAAGCTAACAACC 187
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CAAC-GATCAGAAGCCGAGTGATGAAGTAGTCACCACCACTACTGACGAAGCTAACAACC 177
Query 188 TACCGTTTCCACCGGGCTTGCCATTTGGCGGTGTTCCTCCGTTACCGTCACTTTTTCCGC 247
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 TGCCGTTTCCACCGGGCTTGCCATTTGGCGGTGTTCCTCCGTTACCGTCACTATTTCCGC 237
Query 248 CGTTTGTACCTTCTCCGTTCCCTGGAAATATCCCACGTTTACCATTTCCGTTTCCGTTTC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGTTTGTACCTTCTCCGTTCCCTGGAAATATCCCACGTTTACCATTTCCGTTTCCGTTTC 297
Query 308 CGACATCACCTCCGGCGCCATCCCTTCCTGGTTTCCCTGGCTTTACGTTTCCTCCCCTGC 367
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 298 CGACATCACCTCCGGCGCCATCTCTTCCTGGGCTCCCTGGCTTTACGTTTCCTCCCCTGC 357
Query 368 CATTCCTCACACCGCCACCTCTGTGAACGTATACGTTA-GCGCCGTTATAATGTTAGTTA 426
| |||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||
Sbjct 358 CGTTCCTCACGCCGCCACCTCTGTGAACGTATAGGTTAAG-GCCGTTATAATATTAGTTA 416
Query 427 TCCC-GTTGGAATAATCTCATGGTAATTTCGATAATCATCATGTGTACTCGATGATATAA 485
||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 417 TCCTTGTTGGAATAATCTCACGGTAATATCGATAATGATCATGTGTACTCGATGATATAA 476
Query 486 TACTGGTTTTTAATGAAAATTTTAATAAA 514
||| |||||| |||||||||||||||||
Sbjct 477 GACTAGTTTTTTATGAAAATTTTAATAAA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5