BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34880.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901330 jgi|Araly1|901330|Al_scaffold_0004_1980 2012 0.0
Ahg336188 jgi|Araly1|336188|fgenesh1_pg.C_scaffold_1002753 898 0.0
> Ahg901330 jgi|Araly1|901330|Al_scaffold_0004_1980
Length=2340
Score = 2012 bits (1089), Expect = 0.0
Identities = 1510/1706 (89%), Gaps = 57/1706 (3%)
Strand=Plus/Plus
Query 83 ACAAGGGCACTAATGTAGAACCTCCTAGTAGTCCGTATCATCCGAAGGTTCTTGCTAGAT 142
|||||| ||||||||||||| |||||||||||||| ||||| | || ||||||||||||
Sbjct 35 ACAAGGACACTAATGTAGAATCTCCTAGTAGTCCGCGTCATCGGGAGATTCTTGCTAGAT 94
Query 143 GGGATCCGGCTAATGAAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 202
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GGGATCCGGCTGATGCAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 154
Query 203 CAGAGGAGTTTGAAGATACGCTTGCTTACATAGAAAAAATACGTCCCTTAGCTGAATCAT 262
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 155 CAGAGGAGTTTGAAGATACACTTGCTTACATAGAAAAGATACGTCCCTTAGCTGAATCAT 214
Query 263 TTGGTATTTGTCGAATCGTGCCACCGTCGAATTGGTCTCCTCCTTGCCGGCTTAAAGGGG 322
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 215 TTGGTATTTGTCGAATCGTGCCACCATCGAATTGGTCTCCTCCTTGTCGGCTTAAAGAGA 274
Query 323 ATAGTATATGGAAGAATAAAAATTTCCCAACCCGTGTTCAGTTTGTTGACCTGCTTCAGA 382
| |||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||
Sbjct 275 AAAGTATATGGAAGGATACAAAGTTCCCAACCCGTATTCAGATTGTTGACCTGCTACAGA 334
Query 383 ACAGAGGA-CCC--G-TGAAGAAGAAGACACCTAAAGGAAGGAAACGGAAACGAGGAA-A 437
||||| || ||| | ||||||||||| |||||| ||||||||||||||||| |||| |
Sbjct 335 ACAGA-GAGCCCATGAAGAAGAAGAAGAAACCTAAGGGAAGGAAACGGAAACGTGGAAGA 393
Query 438 ATACTCAAGAACCGTCGCCCCCAAGAAACGAAATGGCTCTGTTTCTAAATCAGTTT-CTA 496
| ||||||||||||||||| ||||||||||| |||||||||| ||| || |||| ||
Sbjct 394 A-ACTCAAGAACCGTCGCCTCCAAGAAACGATATGGCTCTGTATCTCGTTCTGTTTCCT- 451
Query 497 CCCCCAAGGCGACCGAAGAAGAGA-ATTTTGGTTTCGAA-TCTGGTCCAGAATTT-ACTC 553
| |||||| ||||||||||||||| | ||||||||| || |||||| ||| |||| ||||
Sbjct 452 CACCCAAGACGACCGAAGAAGAGACA-TTTGGTTTC-AACTCTGGTTCAG-ATTTCACTC 508
Query 554 TTGAGAAGTTTGAGAAATACGCTCAAGATTTCAAAGACTCCTACTTTGAAAGAAAAGACA 613
||||| | |||||||||||||||| | | |||||||||| ||||||| |||||||||||
Sbjct 509 TTGAGGACTTTGAGAAATACGCTCGATACTTCAAAGACTATTACTTTGGAAGAAAAGACA 568
Query 614 ATG-T-----T---GGA--GA-TCCATCTGTTGAGGAGATCGAAGGAGAGTACTGGAGAA 661
||| | | | | || |||| ||||||||||||||||||||||||||||||| |
Sbjct 569 ATGCTGGAGATACAGAATGGACTCCAACTGTTGAGGAGATCGAAGGAGAGTACTGGAGGA 628
Query 662 TCATTGAGAAAGAAACAAATGAAGTTAAGGTAT-TGTATGG-GACGGATTTGGAGAATCC 719
|||||||| || |||| ||||||| |||||| | ||||| | | ||||||||||| |
Sbjct 629 TCATTGAGCAACCAACAGATGAAGTCGAGGTATCT-TATGGCG-CTGATTTGGAGAA-CA 685
Query 720 CA-TACTTGGAAGCGG-TTTCTCCAA-AG-GGGTAAAAATTCCAACCAGAAGAAATGATA 775
| |||||||||| || ||| | ||| || ||| | || |||| |||||| ||||
Sbjct 686 GAGTACTTGGAAGTGGATTT-TACAAGAGAGGG--GACATGAAAACCGGAAGAAGCGATA 742
Query 776 TGGATAAATACATATCTTCTGGTTGGAATTTGAACAACCTCGCC-CGTCTGCAGGGATC- 833
||||| ||||||| |||| |||||||| ||||||||||| || | || | || ||
Sbjct 743 TGGATCCATACATAGCTTCAGGTTGGAACTTGAACAACCT-ACCGAGGCTCCCTGGCTCG 801
Query 834 TCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGG 893
| |||| || || ||||||| | | || || || |||| ||||||||| | || | ||
Sbjct 802 T-TACTGTCATTCGAGGATTCTCATATTTCTGGTGTTCTCGTGCCATGGTTGTACATTGG 860
Query 894 CATGTGCTTTTCAACGTTTTGTTGGCATGTTGAGGACAATCATCTATATTCACTGAACTA 953
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 861 CATGTGCTTTTCAACGTTTTGTTGGCATGTCGAGGACAATCATCTATACTCACTGAACTA 920
Query 954 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCT 1013
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 921 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCCGGAAGCCATGCAACTGGGCT 980
Query 1014 AGAGAAGGCAATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1073
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGAGAAGGCGATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1040
Query 1074 TGAACTGGTTACTCAGTTTTCTCCAA-CGATTTTGAAAAATGAGGGAGTCCCGGTTTATC 1132
|||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 1041 TGAACTAGTTACTCAGTTTTCTCCAAGC-ATTTTGAAAGATGAGGGAGTCCCGGTTTATC 1099
Query 1133 GAGCTGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGTT 1192
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1100 GTGCAGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGAT 1159
Query 1193 TCAACTGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCGGTTGATTGGCTGGCTC 1252
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1160 TCAACAGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCTGTTGATTGGCTAGCTC 1219
Query 1253 ATGGACAGAATGCTGTGGAAATATATAGCCAAGAGA-CTCGGAAAACGTCTCTATCTCAT 1311
|||| || |||||||||||||||||||||||||||| | |||||| | ||| | ||||||
Sbjct 1220 ATGGTCAAAATGCTGTGGAAATATATAGCCAAGAGAAC-CGGAAAGCTTCTTTGTCTCAT 1278
Query 1312 GACAAAATTCTCCTTGGAGCAGCTTTTGAAGCTGTTAAGTCCCTCTCAGCA-CATGGGGA 1370
|||||| ||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1279 GACAAACTTCTCCTCGGAGCAGCTTATGAAGCTGTTAAGTCCCTCTCAGCTTC-TGGGGA 1337
Query 1371 AGATAATACAAAAAGGTTCAGCTGGAAGAGATTCTGTGGGAAGGACGGTAT-CATAACTA 1429
|||||||||||||||||||||||||||||| |||||||||||||| ||||| | || |||
Sbjct 1338 AGATAATACAAAAAGGTTCAGCTGGAAGAGTTTCTGTGGGAAGGATGGTATTCTTA-CTA 1396
Query 1430 AGGCCATCGAGGCACGGTTACGGATGGAAGAAAAAAGAATTGAGGCTCTTGGAAATGGTT 1489
|||| |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 1397 AGGCAATCGAGGCGCGGTTACGGATAGAAGAAAGAAGAATTGAGGCCCTTGGAAATGGTT 1456
Query 1490 TCAGCTTG-GTAAAGATGGATAAAG-ACTTTGATTCAAACTGTGAAAGGGAATGCATCTC 1547
|||||||| | ||||||||| |||| ||||||||||||| |||||| ||||||||||||
Sbjct 1457 TCAGCTTGAG-AAAGATGGA-AAAGGACTTTGATTCAAAAGGTGAAATGGAATGCATCTC 1514
Query 1548 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAAGAATTGCTCATCTCTCGAAGA 1607
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 1515 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAACAACTGCTCATCTTTCGAAGA 1574
Query 1608 ATATGGTTGCACGAAACACGATATTTGTTCATGTGAAGGGAAAGACCGTTTCATTTTTCT 1667
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | |||
Sbjct 1575 ATATGGTTGCACGAAACACGATATATGTTCATGTGAAGGGAACGACCGGTTCATCTATCT 1634
Query 1668 TCGTTACACCATAGATGAGTTAAGCTCATTGGTAAGAGCATTGGAAGGTGAATCAGATGA 1727
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1635 TCGTTACACCATAGATGAGTTAAGCTCGTTGATAAGAGCATTGGAAGGTGAATCAGATGA 1694
Query 1728 TCTAAAAGCTTGG-CTTTCCAAAGTC 1752
| ||||| ||||| ||| ||||||||
Sbjct 1695 TTTAAAAACTTGGGCTT-CCAAAGTC 1719
Score = 697 bits (377), Expect = 0.0
Identities = 518/583 (89%), Gaps = 22/583 (4%)
Strand=Plus/Plus
Query 1841 ATGGTGAGTGTAATAAAT-CTTCTGAGATATGTGAGGATGCATCCATCATGGACTTAGCT 1899
|||||||||||||| | | |||||||||||||||| ||||||||||| ||||| || |||
Sbjct 1778 ATGGTGAGTGTAAT-ACTGCTTCTGAGATATGTGATGATGCATCCATTATGGAATTTGCT 1836
Query 1900 GCTTATCAT-GTTGAACCTATAAATCTTGGGTTCTTGGTCGTGGGAAAGCTTTGGTGTAA 1958
|||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1837 GCTTAT-GTCGTCGAACCTATAAATCTTGGGTTCTTGGTCGTCGGAAAGCTTTGGTGTAA 1895
Query 1959 CAAGCATGCTATATTTCCAAAAGGGTTTAAGAGTCGTGTTAAGTTCTATAACGTGCAAGA 2018
|||| ||||||||||||||| ||||||||||||||| ||||| || |||||| |||||||
Sbjct 1896 CAAGGATGCTATATTTCCAAGAGGGTTTAAGAGTCGGGTTAAATTTTATAACATGCAAGA 1955
Query 2019 TCCAATGAGAATAAGCTATTACGTCTCTGAGATTGTAGATGCAGGACTTCTGGGTCCACT 2078
|||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1956 TCCAATGAGAATGAGCTATTACGTCTCTGAGATTTTAGATGCCGGACTTATGGGTCCACT 2015
Query 2079 CTTCAAGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGCCTCACCTCAGAA 2138
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2016 CTTCAGGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGTGTCACCTCAGAA 2075
Query 2139 GTGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATCATGAGACGCAGCAACCAAAA 2198
|||||||||||||||||||||||||||||||||||||| || | |||||||| |||| |
Sbjct 2076 ATGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATGATAAAACGCAGCAGCCAAGA 2135
Query 2199 ACAAGATGTCCATATGTTGGAAAGCATCGATGGGTTAAAAATGTTTGGCTTTCGCTCTCC 2258
||||||||||||||||||||||| ||| || |||||||||||||| || |||||||||||
Sbjct 2136 ACAAGATGTCCATATGTTGGAAACCATTGACGGGTTAAAAATGTTCGGTTTTCGCTCTCC 2195
Query 2259 GTTTATTGTTCAGGCCACTGAGGCTCTTGACCCGAACCATGGCCAAGTGGAGTATTGGAA 2318
|||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 2196 GTTTATAGTTCAGGCCACTGAGGCTCTTGACCCGAACCATCACCTAGTGCAGTATTGGAA 2255
Query 2319 CCATAAGAATGAGAAGGATTCGCTGGAAATGAAAGATTGCTTCATGTCAAATTCTTCCCA 2378
|||||||||||||| || || ||| | |||||||||||||||||
Sbjct 2256 CCATAAGAATGAGACGGCTT-GCT---------------C--CATGTCAAATTCTTCCCT 2297
Query 2379 GAGCTTAAGCAAAGCAAGACTTTTTGGGGTTGATTTGAATTGA 2421
|||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 2298 GAGCTTAACCAAAACAAAACTTTTTGGGGTTGATTTGAATTGA 2340
Score = 99.0 bits (53), Expect = 1e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAGCGTAGAACCTCCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAATGTAGAATCTCCT 60
Query 61 CGTAG 65
||||
Sbjct 61 AGTAG 65
> Ahg336188 jgi|Araly1|336188|fgenesh1_pg.C_scaffold_1002753
Length=2544
Score = 898 bits (486), Expect = 0.0
Identities = 1344/1737 (77%), Gaps = 143/1737 (8%)
Strand=Plus/Plus
Query 79 AAGAACAAGGGCACTAATGTAGAACCTCCTAGTAGTCCGTATCATCCGAAGGTTCTTGCT 138
||| |||||| ||||| | | |||| ||||||||||| ||||| ||||||| |||||
Sbjct 85 AAGGACAAGGACACTATTATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTGCT 144
Query 139 AGATGGGAT-CCGGCT-AATGAAAAGAGGCCAGA-CATTGGTGAAGCTCCAGTATTCCAC 195
|||| || | | || | || | ||||||| || || | ||||||||| ||||| |||
Sbjct 145 AGAT-GGTTACTGGATGAA-GCGCAGAGGCC-GATTATCGATGAAGCTCCGGTATT-CAC 200
Query 196 CCTA-CATCAGAGGAGTTTGAAGATACGCTTGCTTACATAGAAAAAATACGTCC-CTTAG 253
|| | ||| |||||||||||||||||| |||||||| || ||||| |||||||| | |||
Sbjct 201 CCCATCATTAGAGGAGTTTGAAGATACACTTGCTTATATCGAAAAGATACGTCCAC-TAG 259
Query 254 CTGAATCATTTGGTATTTGTCGAATCGTGCCACCGTCGA-ATTGGTCTCCTCCTTGCCGG 312
| || | |||||||| ||||||||| | ||||| |||| | ||| ||||||||||||
Sbjct 260 CAGAGCCGTTTGGTATCTGTCGAATCATCCCACCATCGACA-TGGAAACCTCCTTGCCGG 318
Query 313 CTTAAAGG-GGATAGTATATGGAAG-AATA-AAAATTTCCCAACCCGTG-TTCAGTTTGT 368
||| |||| | | | ||||||| || || | ||| |||||| ||||| | ||||| ||
Sbjct 319 CTT-AAGGAGAAGAATATATGGGAGCAA-ACAAAGTTTCCC-ACCCG-GATTCAGAACGT 374
Query 369 TGACCTGCTTCAGAACAGAGGACCCGTGAAGA-AGAAGACACCTAAAG-GAAGGAAACGG 426
||||||||||||||| | || || || || | |||| ||| |||| | || ||||||
Sbjct 375 CGACCTGCTTCAGAACCG-CGAGCC--GATGACA-AAGAAACC-AAAGAGTAGAAAACGG 429
Query 427 -AAACGAGGAA-AATACTCAAGAA-CCG-TCGCCCCCAAGAAACGAAATGG--C-TCTGT 479
||| || ||| || |||| |||| | ||| | |||| |||| ||| | |||
Sbjct 430 AAAAGGA-GAAGAA-ACTCGAGAATGAGTTCG--TCTAAGAGACGATCTGGTTCTTCTCC 485
Query 480 TTCTAAATCAG-TTTCTA-CCCCCAAGGCGACCGAAGAAGAGAATTTTGGTTTCGAA-TC 536
||| |||| | ||| | | ||| | | | | | || ||||| ||||||||| || ||
Sbjct 486 CTCTGAATC-GACTTC-ATCTCCCGA-G-G-CTG-AG--GAGAAATTTGGTTTC-AATTC 536
Query 537 TGGTCCAGAATTTACTCTTGA-GAAGTTTGAGAAATACGCTCAAG-ATTTCAAAGACTCC 594
|||| |||| || |||||||| | ||||||||||||| |||| | |||| ||||||||
Sbjct 537 TGGTTCAGACTTCACTCTTGATG-AGTTTGAGAAATATGCTC-TGCATTTTAAAGACTCT 594
Query 595 TACTTTG-AAAGAAAAGA--C------A-A--T-GT----TGGAGATCCATCTGTTGAGG 637
||||| | |||| ||||| | | | | || |||| | || ||||| || |
Sbjct 595 TACTTCGAAAAG-AAAGACTCTGGTGGAGATGTAGTAAAATGGACA-CCGTCTGTGGATG 652
Query 638 AGATCGAAGGAGAGTACTGGAGAATCA-TTGAGAAAGAAACAAATGAAGTTAAGGTATTG 696
| || ||||| || |||||| | || | ||||| || |||| ||||||| ||||||
Sbjct 653 AAATAGAAGGCGAATACTGGCGGAT-AGTTGAGCAACCAACAGATGAAGTGGAGGTATAC 711
Query 697 TATGGGA-CGGATTTGGAGAATCCCATACTTGGAAGC-GG-TTTCTCCAAAG-G-GGTAA 751
||| ||| | || ||||||||| ||||||||||| || ||| | |||| | || ||
Sbjct 712 TAT-GGAGCTGACTTGGAGAATGGGGTACTTGGAAGCGGGTTTTAT-AAAAGAGCGG-AA 768
Query 752 AAATTCCAACCAGAAGAAATGATATGGATAAATACATATCT-TCTGGTTGGAATTTGAAC 810
|| || |||| | | | ||||||||| | |||| | | ||||| ||||| |||||
Sbjct 769 AAGTT--AACC-G--GTAGCGATATGGATCAGTACACA-GTATCTGGCTGGAACTTGAAT 822
Query 811 AACCTCGCC-CGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGT 869
||||| ||| ||||| | || ||| | || || ||||| |||||||| ||||| || ||
Sbjct 823 AACCT-GCCGCGTCTCCCCGGCTCTGTCCTCTCTTTTGAAGATTGTGATATCTCTGGAGT 881
Query 870 TC-AGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGCATGTTGAGG 928
|| | || || ||||||||||| || |||||||||||| | |||||||||||||| ||||
Sbjct 882 TCTA-GTTCCTTGGCTCTATGTAGGAATGTGCTTTTCATCATTTTGTTGGCATGTGGAGG 940
Query 929 ACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAG 988
|| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 941 ACCATCATTTATATTCACTGAACTATCATCACTTTGGGGAGCCAAAAGTATGGTATGGTG 1000
Query 989 TTCCGGGAAGCCATGCAACTGGGCTAGAGAAGGCAATGAGAAAACATCTACCAGATTTGT 1048
|||| |||||| ||||||| | || |||||||| |||||||||||||| || || |||
Sbjct 1001 TTCCAGGAAGCAATGCAACCGCTCTTGAGAAGGCGATGAGAAAACATCTGCCTGACCTGT 1060
Query 1049 TCGATGAACAACCTGATCTACTTCATGAACTGGTTACTCAGTTTTCTCCAACGATTTTGA 1108
| || ||||| |||||| ||||||||| |||||||||||||||||||| | || |||
Sbjct 1061 TTGAAGAACAGCCTGATTTACTTCATGGCCTGGTTACTCAGTTTTCTCCTTCAATCCTGA 1120
Query 1109 AAAATGAGGGAGTCCCGGTTTATCGAGCTG-TTCAGAATGCAGGGGAGTATGT-TCTAAC 1166
|| |||||||||||| || ||| || | || |||||||| ||||||||||||| | | ||
Sbjct 1121 AAGATGAGGGAGTCCAGGCTTACCGGG-TGGTTCAGAATTCAGGGGAGTATGTAT-TGAC 1178
Query 1167 ATTCCCTAGAGCATATCATTCGGGTTTCAACTGCGGATTCAACTGTGCAGAAGCGGTGAA 1226
|||||| || || |||||| | || ||||||||||| |||||||| ||||||||||| ||
Sbjct 1179 ATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCAACTGCGCAGAAGCGGTTAA 1238
Query 1227 TGTGGCTCCGGTTGATTGGCTGGCTCATGGACAGAATGCTGTGGAAATATATAGCCAAGA 1286
||||||||| ||||||||| || ||||||||||||| ||||||||| | || || ||||
Sbjct 1239 TGTGGCTCCTGTTGATTGGTTGACTCATGGACAGAACGCTGTGGAACTTTACAGTAAAGA 1298
Query 1287 GACTCGGAAAACGTCTCTATCTCATGACAAAATTCTCCTTGGAGCAGCTTTTGAAGCTGT 1346
||| |||| || ||||| ||||| |||||| |||| ||||||||||||| |||||||||
Sbjct 1299 GACAAGGAAGACTTCTCTGTCTCACGACAAACTTCTTCTTGGAGCAGCTTATGAAGCTGT 1358
Query 1347 TAAGTCCCT-------CTC--AGCA-CATG-GGGAA-G-ATAATACAA-AAAGGTTCAGC 1392
||||||||| ||| ||| | || ||||| | | ||||||| ||| || ||
Sbjct 1359 TAAGTCCCTTTGGGAACTCTCAGCTTC-TGTGGGAAAGGAAAATACAACAAAT-TTGAGA 1416
Query 1393 TGGAAGAGATTCTGTGGGAAGGACGGTATCA-TAACTAAGGCCATCGAGGCACGGTTACG 1451
||||| || |||||||||||| |||| | || | || || || ||| |||| |||||||
Sbjct 1417 TGGAAAAGTTTCTGTGGGAAGAACGGGA-CACTTACCAACGCGATCCAGGCTCGGTTACA 1475
Query 1452 GATGGAAGAAAAAAGAATTG-AGGCTCTTGGAAATGG-TT-T-CAG-CTTGGTAAAGATG 1506
|||||||| |||||||| || ||||||| | || || | || | | | ||||||
Sbjct 1476 AATGGAAGAGGGAAGAATTGCAG-CTCTTGGTAG-GGATTCTTCAATCCTAATGAAGATG 1533
Query 1507 GATAAAGACTTTGATTCAAACTGTGAAAGGGAATGCATCTCTTGCTTT-AGTGACTTGCA 1565
|| || || ||||||||||||||||||||||||||| |||| |||||| | ||| |||||
Sbjct 1534 GAGAAGGAGTTTGATTCAAACTGTGAAAGGGAATGCTTCTCATGCTTTTA-TGATTTGCA 1592
Query 1566 TCTCTCTGCTACTGGCTGCAAGAATTGCTCATCTCTCGAAGAATATG-GTTGCACGAAA- 1623
|||||| ||| ||||||||||| | |||| || || || ||||| | || || | ||
Sbjct 1593 TCTCTCGGCTTCTGGCTGCAAG--T-GCTC-TC-CT-GACGAATACGCGT-GC-CTTAAG 1644
Query 1624 CA--C-GAT-AT-TT-GTTCATGTGAAGGGAAAGACCG-TTTCATTTTTCTTCGTTACAC 1676
|| | ||| || || |||||||||| | |||||| | ||| |||| ||| || |||||
Sbjct 1645 CATGCAGATGATCTTTGTTCATGTGATGAGAAAGATGGATTT-ATTTGTCTCCGGTACAC 1703
Query 1677 CATAGATGAGTTAAGCTCATTGGTAAGAGCATTGGAAGGTGAATCAGATGATCTAAA 1733
|| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||
Sbjct 1704 AATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTTAAA 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5