BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34890.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981 2760 0.0
Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1 1531 0.0
> Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981
Length=1782
Score = 2760 bits (1494), Expect = 0.0
Identities = 1689/1783 (95%), Gaps = 14/1783 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTACGTACTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60
Query 61 AGCAGTGTTGGTGTCCTTCTTCAGTCTTGTGGTCTTCGCGTTACTTGTATCAAAATCGAT 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 AGCAGTGTTGGTGTCCTTCTTCAATCTTGTGGTCTTCGCGTTACTTGTATCAAAATTGAT 120
Query 121 CCGTATTTGAACTATGATGCTGGAACCATATCCCCTTACGAACATGGAGAAGTGTTTGTC 180
|| ||| |||| || ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 CCTTATCTGAATTACGATGCTGGAACCATATCTCCTTACGAACATGGTGAAGTGTTTGTC 180
Query 181 TTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGAT-AC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGATGTC 240
Query 240 AACATTAACTCGAGATAACAATATCACTTACGGGAAGATTCAGCGGTATGTGATGGAGAA 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 241 -ACATTAACTCGAGATAACAATATCACTTACGGGAAGATTCAGCAGTATGTGATCGAGAA 299
Query 300 AGAGAGGAAAGGAGATTACTTAGGGGAAACTGTTCAGATTGTTCCTCACGTCACTGATAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGAGGAAAGGAGATTACTTAGGGGAAACTGTTCAGATTGTTCCTCACGTCACTGATAC 359
Query 360 AATCCGAGAATGGGTGGAGAGAGTTGCAATGATTCCTGTCGATGGAAAAGAAGGTCCTCC 419
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 360 AATCCGAGAATGGGTGGAGAAAGTTGCAATGATTCCTGTAGATGGAAAAGAAGGTCCTCC 419
Query 420 TGATGTTTGCATCATTGAGTTAGGTGGAACTATAGGAGATAATGAATCCAGGCCTTTTGC 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATGTTTGCATCATTGAATTAGGTGGAACTATAGGAGATAATGAATCCAGGCCTTTTGC 479
Query 480 TGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGATCCATGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGATCCATGT 539
Query 540 CACCCTCGTGCCTGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACACAGCACAG 599
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACACTCGTGCCAGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACACAGCACAG 599
Query 600 TATTAAAGATCTACGAGGCTTTGGTTTGACACCTAATATCATAGCTTGTCGGAGCACAAA 659
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 600 CATTAGAGATCTACGAGGCTTGGGTTTGACACCTAATATCATAGCTTGTCGGAGCACAGA 659
Query 660 GGCACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCGATTCAGAA 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCGATTCAGAA 719
Query 720 CATCTTCTCTCTCTGTGATGTTCCCAACATCTGGCACATTCCTCTGTTGCTCAAGGAGCA 779
|||||||||||||| |||||||| || |||||||||||||||| ||||||||| ||| ||
Sbjct 720 CATCTTCTCTCTCTATGATGTTCACAGCATCTGGCACATTCCTTTGTTGCTCAGGGAACA 779
Query 780 GAAGGCTCATGAAGCAATTTCAAAAGTCCTGAACCTTTCTGGTATTGCTAAAGAACCTTC 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGGCTCATGAAGCAATATCAAAAGTCCTGAACCTTTCTGGTATTGCTAAAGAACCTTC 839
Query 840 TTTAGAGAAATGGGCATCAATGGTAGAAATTAGTGACGGTTTAAATGTACCCGTGAGAAT 899
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 840 TTTAGAGAAATGGGCTTCAATGGTAGAAATTAGTGACAGTTTAAATGTACCGGTGAGAAT 899
Query 900 CGCTATCGTGGGGAAATATACAGATCTATCAGATGCCTATCTCTCTGTCTTGAAGGCCCT 959
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 900 CGCTATCGTGGGAAAATATACAGATCTCTCAGATGCCTATCTTTCTGTCTTGAAGGCTCT 959
Query 960 CCTCCATGCTTCTGTGGCTTTTC-ACAAAAAGCTTGAAGTTGATATGGTTCCATCGTGTG 1018
|||||||||||| ||||||||| | |||||||||| |||||||||||||||||| ||||
Sbjct 960 CCTCCATGCTTCCGTGGCTTTTGGA-AAAAAGCTTGTAGTTGATATGGTTCCATCTTGTG 1018
Query 1019 ATCTCGAAAAGACCAAGAAGCAAGAGGATTCACGCGCATATGAGGCTGCTTGGAAGTTAC 1078
||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1019 ATCTCGAAAAGACCACCAAGAAAGAGAATTCACGCGCATACGAGGCTGCTTGGAAGTTAC 1078
Query 1079 TGAAGGACGCAAATGGAGTTCTTCTCCCTGGAGGGTTTGGTGATAGGGGAGTGGAGGGGA 1138
| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1079 TCAAGGACGCAGATGGAGTTCTTCTCCCTGGAGGGTTTGGTGATAGGGGAATAGAGGGGA 1138
Query 1139 TGATTCTTGCAGCAAAATATGCCCGAGAAAACAATATCCCTTTCCTCGGTATCTGTCTCG 1198
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 TGATTCTTGCAGCAAAATATGCCCGAGAAAACAGTATCCCTTTCCTCGGTATCTGTCTCG 1198
Query 1199 GGATGCAGATCGCTGTCATCGAGTTTGCACGCTCACTTCTCTGCTTGCCTGATGCAAATA 1258
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1199 GGATGCAGATCGCTGTTATCGAGTTTTCACGCTCACTTCTCTACTTGCCTGATGCAAATA 1258
Query 1259 GCACAGAGTTTGAACCTGAAACCAAACATCCATGCATCATATTCATGCCTGAGGGCTCCA 1318
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 GCACAGAGTTTGAACCTGAAACCAAAAATCCATGCATCATATTCATGCCTGAGGGCTCCA 1318
Query 1319 TAACTCATATGGGAGGCACAATGCGATTAGGTTCGAGAAGAGCCTATTTCCATGACAAGG 1378
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |
Sbjct 1319 CAACTCATATGGGAGGCACAATGAGATTAGGCTCGAGAAGAGCCTATTTCCATGTCAAAG 1378
Query 1379 AAAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCGATGAAAGGCATCGCCATA 1438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCGATGAAAGGCATCGCCATA 1438
Query 1439 GATATGAGGTGAATCCTGATATGGTTGCAAGCCTTGA-ACAGGCTGGTCTCTCTTTTGCT 1497
||||||||||||||||||||||||||||| |||| || | |||| |||||||||||||||
Sbjct 1439 GATATGAGGTGAATCCTGATATGGTTGCATGCCTCGAGA-AGGCGGGTCTCTCTTTTGCT 1497
Query 1498 GCAAAAGATGAAACTGGGGAGCGCATGGAGATTGTTGAACTTCCAAGCCACCCTTTCTTC 1557
||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||| |||
Sbjct 1498 GCAAAAGATGAAACTGGCGAGCGAACGGAGATTGTTGAAGTTCCAAGCCACCCTTTTTTC 1557
Query 1558 ATCGGTGCTCAATTTCATCCCGAGTACAAATCGAGACCCAGGAAAGTATCTCCTCTGTTC 1617
|||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 1558 ATCGGTGCTCAATTCCATCCCGAGTACAAGTCGAGACCCGGGAAAATATCTCCTCTGTTC 1617
Query 1618 TTAGGACTAATAGCAGCATCCTGTGGTGAGCTAGATGCAGTCCTGAATCCAGTTTCCATT 1677
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTAGGACTAATAGCAGCATCATGTGGTGAGCTAGATGCAGTCCTGAATCCAGTTTCCATT 1677
Query 1678 CACCAACACAACCAAA-CAATGTTCTTGGAAAAGAAACAACACATAGGTTGGTCCAAAAA 1736
|||||| ||||||||| || ||| |||||||||||| ||| ||| |||| ||||||||||
Sbjct 1678 CACCAAGACAACCAAAACA-TGTACTTGGAAAAGAA-CAAAACAAAGGTCGGTCCAAAAA 1735
Query 1737 A-TGTTTTGGTGATAAAAACCAACAAGAAGAAATCTCAGAAAC 1778
| ||||||||| || ||| |||||||||| | ||||||||||
Sbjct 1736 AGTGTTTTGGTAATGAAA-CCAACAAGAA-A--TCTCAGAAAC 1774
> Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1
Length=2460
Score = 1531 bits (829), Expect = 0.0
Identities = 1411/1691 (83%), Gaps = 44/1691 (3%)
Strand=Plus/Plus
Query 1 ATGAAGTACGTACTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 325 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAGTAACAGCA 384
Query 61 AGCAGTGTTGGTGTCCTTCTTCA-GTCTTGTGGTCTTCGCGTTACTTGTATCAAAATCGA 119
|| ||| ||||||| |||||| | | ||||||||||||| ||||||| ||||||||||||
Sbjct 385 AGTAGTATTGGTGTTCTTCTTAAAG-CTTGTGGTCTTCGAGTTACTTCTATCAAAATCGA 443
Query 120 TCCGTAT-TTGAACTA-TGATGCTGGAACCATATCCCC-TTACGAACATGGAGAAGTGTT 176
||| ||| || ||| | ||||||||||||||| || || || ||||| || ||||| ||
Sbjct 444 TCCTTATCTT-AAC-ACTGATGCTGGAACCATGTCTCCATTT-GAACACGGTGAAGTTTT 500
Query 177 TGTCTTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGA 236
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 501 TGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAATTACGAAAGGTTTCTGGA 560
Query 237 TACAACATTAACTC-GAGATAACAATATCACTTAC-GGGAAGATTCAGCGGTATGTGATG 294
|| || |||||| | |||| || || |||||| || ||||| ||| | | | |||| ||
Sbjct 561 TATAAAATTAAC-CAGAGACAATAACATCACT-ACTGGGAAAATTTACCAGCATGTTATT 618
Query 295 GAGAAAGAGAGGAAAGGAGATTACTTAGGGGAA-ACTGTTCAGATTGTTCCTCACGTCAC 353
| |||||||||||||||||||| || ||| || ||||||||| |||||||||| |||||
Sbjct 619 GCTAAAGAGAGGAAAGGAGATTATTT-GGGAAAGACTGTTCAGGTTGTTCCTCATGTCAC 677
Query 354 TGATACAATCCGAGAATGGGTGGAGAGAGTTGCAATGATTCCTGTCGATGGAAAAGAAGG 413
|||| |||| | ||| ||| | ||||||||||| | |||||||| |||||| | || ||
Sbjct 678 TGATGCAATTCAAGATTGGATTGAGAGAGTTGCGGTTATTCCTGTTGATGGAGAGGAGGG 737
Query 414 TCCTCCTGATGTTTGCATCATTGAGTTAGGTGGAACTATAGGAGATAATGAATCCAG-GC 472
|||| |||||||||| | ||||| ||||||||||||||||| |||| ||||||| | ||
Sbjct 738 TCCTGCTGATGTTTGTGTTATTGAATTAGGTGGAACTATAGGTGATATTGAATCC-GCGC 796
Query 473 CTTTTGCTGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGA 532
||||| ||| || ||| ||||||| || ||| ||||||||| | |||||||||||||
Sbjct 797 CTTTTATTGAGGCGCTTGGCCAATTCTCTTACCGTGTAGGCCCAGGGAATTTCTGTCTGG 856
Query 533 TCCATGTCACCCTCGTGCCTGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACAC 592
||||||||| ||||||||||||||| | ||||||||||||||||||||| || || ||||
Sbjct 857 TCCATGTCAGCCTCGTGCCTGTGCTTAATGTTGTTGGTGAACAGAAAACTAAGCCCACAC 916
Query 593 AGCACAGTATTAAAGATCTACGAGGCTTTGGTTTGACACCTAATATCATAGCTTGTC-GG 651
|||| ||| | || | ||||||||||| || ||||| || ||||| ||||||| | ||
Sbjct 917 AGCATAGTGTCAAGGGGCTACGAGGCTTGGGCTTGACGCCGGATATCTTAGCTTG-CAGG 975
Query 652 AGCACAAAGGCACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCG 711
|||||||||||||||||||| ||||| |||| ||| ||| ||| |||||| |||| |||
Sbjct 976 AGCACAAAGGCACTTGAAGATAATGTGAAAGAAAAACTAGCTCAATTTTGCCATGTCCCG 1035
Query 712 ATTCAGAACATCTTCTCTCTCTGTGATGTTCCCAACATCTGGCACATTCCTCTGTTGCTC 771
|| || | || ||| |||||| ||||||||||||||| ||||| |||||| |||||||
Sbjct 1036 CTTGAGTATATTTTCACTCTCTATGATGTTCCCAACATTTGGCATATTCCTTTGTTGCTA 1095
Query 772 AAGGAGCAGAAGGCTCATGAAGCAATTTCAAAAGTCCTGAACCTTTCTGGTATTGCTAAA 831
||||| ||||| |||||| | ||| |||||||| || || ||| || ||||| || ||
Sbjct 1096 AAGGATCAGAAAGCTCATCTGGTAATCTCAAAAGTGCTCAATCTTGCTAGTATT-CTTAA 1154
Query 832 -GAACCTTCT-TTAGAGAAATGGGCATCAATG-G-TAGAAAT-TAGTGACGGTTTAAATG 886
|| |||||| || | ||| ||| | || | | | | ||| | | ||||| |||| |||
Sbjct 1155 TGAGCCTTCTCTTGGGGAA-TGGACTTCCA-GAGCT-GAACTAT-GTGACAATTTACATG 1210
Query 887 TACCCGTGAGAATCGCTATCGTGGGGAAATATACAGATCTATCAGATGCCTATCTCTCTG 946
| || |||||||| ||| | |||||||||||||||| || || ||||| ||||||||||
Sbjct 1211 TGCCGGTGAGAATTGCTGTTGTGGGGAAATATACAGGCCTCTCTGATGCTTATCTCTCTG 1270
Query 947 TCTTGAAGGCCCTCCTCCATGCTTCTGTGGCTTTTCACAAAAAGCTTGAAGTTGATATGG 1006
|||| ||||| ||| | |||||||||||||||| || ||||||||| | ||||||| |||
Sbjct 1271 TCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGAT-TGG 1329
Query 1007 -TTCCATCGTGTGATCTCGAAAA-GAC-CAAGAAGCAAGAGGATTCACGC-GCATATGAG 1062
||||| | |||||||||||||| || | || | ||||| || || | || ||| |
Sbjct 1330 GTTCCAGCTTGTGATCTCGAAAAAGAAACT-GA-GAAAGAGAATCCA-GATGCGTATAAA 1386
Query 1063 GCTGCTTGGAAGTTACTGAAGGACGCAAATGGAGTTCTTCTCCCTGGAGGGTTTGGTGAT 1122
|||||||||||||| || |||| | | ||||||||||| |||||||||| |||||||||
Sbjct 1387 GCTGCTTGGAAGTTGCTAAAGGGGGTAGATGGAGTTCTTGTCCCTGGAGGTTTTGGTGAT 1446
Query 1123 AGGGGAGTGGAGGGGATGATTCTTGCAGCAAAATATGCCCGAGAAAACAATATCCCTTTC 1182
||||||||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1447 AGGGGAGTGGAAGGGAAGATTCTTGCTGCAAAATATGCCCGTGAAAACAAAATCCCTTTC 1506
Query 1183 CTCGGTATCTGTCTCGGGATGCAGATCGCTGTCATCGAGTTTGCACGCTCACTTCTCTGC 1242
|||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1507 CTCGGTATTTGTCTCGGGATGCAGATTGCTGTCATCGAGTTTGCACGATCAGTTCTCTGC 1566
Query 1243 TTGC-CTGATGCAAATAGCACAGAGTTTGAACCTGAAACCAAACATCCATGCATCATATT 1301
|||| | || ||||| |||||||| ||| |||||||||| |||||||| || ||||| ||
Sbjct 1567 TTGCAC-GACGCAAACAGCACAGAATTTAAACCTGAAACGAAACATCCGTGTATCATTTT 1625
Query 1302 CATGCCTGAGGGCTCCATAACTCATATGGGAGGCACAATGCGATTAGGTTCGAGAAGAGC 1361
|||||| ||||| || | |||||||||||||||||| ||||| ||||| || |||| | |
Sbjct 1626 CATGCCCGAGGGTTCGAGAACTCATATGGGAGGCACTATGCGCTTAGGATCAAGAAAATC 1685
Query 1362 CTA-TTTCCATGACAAGGAAAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCG 1420
|| ||| ||| ||| || |||||||| |||| |||||| ||||||||| | |||||||
Sbjct 1686 CTTCTTTA-ATGTCAAAGACAGCAAATCCGCAAAACTATACGGGAACAAAAACTTTGTCG 1744
Query 1421 ATGAAAGGCATCGCCATAGATATGAGGTGAATCCTGATATGGTTGCAA-GCCTTGA-ACA 1478
|||| |||||||| || |||||||||||||||||||||||||||| || ||||||| | |
Sbjct 1745 ATGAGAGGCATCGTCACAGATATGAGGTGAATCCTGATATGGTTG-AACGCCTTGAGA-A 1802
Query 1479 GGCTGGTCTCTCTTTTGCTGCAAAAGATGAAACTGGGGAGCGCATGGAGATTGTTGAACT 1538
||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| |||||||
Sbjct 1803 GGCCGGTCTTTCTTTCGCTGCGAAAGATGAAACTGGCAAACGCATGGAGATCATTGAACT 1862
Query 1539 TCCAAGCCACCCTTTCTTCATCGGTGCTCAATTTCATCCCGAGTACAAATCGAGACCCAG 1598
|||| ||| |||||||| |||||||||||||| || ||||||| |||||| |||||| |
Sbjct 1863 ACCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGG 1922
Query 1599 GAAAGTATCTCCTCTGTTCTTAGGACTAATAGCAGCATCCTGTGGTGAGCTAGATGCAGT 1658
||||| ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||
Sbjct 1923 GAAAGCGTCTCCTCTGTTTTTAGGACTCATTGCAGCATCGTGTGGCGAGCTAGACACAGT 1982
Query 1659 CCTGAATCCAG 1669
|||||||||||
Sbjct 1983 CCTGAATCCAG 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5