BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34890.1 Length=1794 Score E Sequences producing significant alignments: (Bits) Value Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981 2760 0.0 Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1 1531 0.0 > Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981 Length=1782 Score = 2760 bits (1494), Expect = 0.0 Identities = 1689/1783 (95%), Gaps = 14/1783 (1%) Strand=Plus/Plus Query 1 ATGAAGTACGTACTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60 Query 61 AGCAGTGTTGGTGTCCTTCTTCAGTCTTGTGGTCTTCGCGTTACTTGTATCAAAATCGAT 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 61 AGCAGTGTTGGTGTCCTTCTTCAATCTTGTGGTCTTCGCGTTACTTGTATCAAAATTGAT 120 Query 121 CCGTATTTGAACTATGATGCTGGAACCATATCCCCTTACGAACATGGAGAAGTGTTTGTC 180 || ||| |||| || ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 121 CCTTATCTGAATTACGATGCTGGAACCATATCTCCTTACGAACATGGTGAAGTGTTTGTC 180 Query 181 TTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGAT-AC 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 TTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGATGTC 240 Query 240 AACATTAACTCGAGATAACAATATCACTTACGGGAAGATTCAGCGGTATGTGATGGAGAA 299 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 241 -ACATTAACTCGAGATAACAATATCACTTACGGGAAGATTCAGCAGTATGTGATCGAGAA 299 Query 300 AGAGAGGAAAGGAGATTACTTAGGGGAAACTGTTCAGATTGTTCCTCACGTCACTGATAC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGAGAGGAAAGGAGATTACTTAGGGGAAACTGTTCAGATTGTTCCTCACGTCACTGATAC 359 Query 360 AATCCGAGAATGGGTGGAGAGAGTTGCAATGATTCCTGTCGATGGAAAAGAAGGTCCTCC 419 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 360 AATCCGAGAATGGGTGGAGAAAGTTGCAATGATTCCTGTAGATGGAAAAGAAGGTCCTCC 419 Query 420 TGATGTTTGCATCATTGAGTTAGGTGGAACTATAGGAGATAATGAATCCAGGCCTTTTGC 479 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGATGTTTGCATCATTGAATTAGGTGGAACTATAGGAGATAATGAATCCAGGCCTTTTGC 479 Query 480 TGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGATCCATGT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGATCCATGT 539 Query 540 CACCCTCGTGCCTGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACACAGCACAG 599 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CACACTCGTGCCAGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACACAGCACAG 599 Query 600 TATTAAAGATCTACGAGGCTTTGGTTTGACACCTAATATCATAGCTTGTCGGAGCACAAA 659 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 600 CATTAGAGATCTACGAGGCTTGGGTTTGACACCTAATATCATAGCTTGTCGGAGCACAGA 659 Query 660 GGCACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCGATTCAGAA 719 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGTACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCGATTCAGAA 719 Query 720 CATCTTCTCTCTCTGTGATGTTCCCAACATCTGGCACATTCCTCTGTTGCTCAAGGAGCA 779 |||||||||||||| |||||||| || |||||||||||||||| ||||||||| ||| || Sbjct 720 CATCTTCTCTCTCTATGATGTTCACAGCATCTGGCACATTCCTTTGTTGCTCAGGGAACA 779 Query 780 GAAGGCTCATGAAGCAATTTCAAAAGTCCTGAACCTTTCTGGTATTGCTAAAGAACCTTC 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GAAGGCTCATGAAGCAATATCAAAAGTCCTGAACCTTTCTGGTATTGCTAAAGAACCTTC 839 Query 840 TTTAGAGAAATGGGCATCAATGGTAGAAATTAGTGACGGTTTAAATGTACCCGTGAGAAT 899 ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 840 TTTAGAGAAATGGGCTTCAATGGTAGAAATTAGTGACAGTTTAAATGTACCGGTGAGAAT 899 Query 900 CGCTATCGTGGGGAAATATACAGATCTATCAGATGCCTATCTCTCTGTCTTGAAGGCCCT 959 |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 900 CGCTATCGTGGGAAAATATACAGATCTCTCAGATGCCTATCTTTCTGTCTTGAAGGCTCT 959 Query 960 CCTCCATGCTTCTGTGGCTTTTC-ACAAAAAGCTTGAAGTTGATATGGTTCCATCGTGTG 1018 |||||||||||| ||||||||| | |||||||||| |||||||||||||||||| |||| Sbjct 960 CCTCCATGCTTCCGTGGCTTTTGGA-AAAAAGCTTGTAGTTGATATGGTTCCATCTTGTG 1018 Query 1019 ATCTCGAAAAGACCAAGAAGCAAGAGGATTCACGCGCATATGAGGCTGCTTGGAAGTTAC 1078 ||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct 1019 ATCTCGAAAAGACCACCAAGAAAGAGAATTCACGCGCATACGAGGCTGCTTGGAAGTTAC 1078 Query 1079 TGAAGGACGCAAATGGAGTTCTTCTCCCTGGAGGGTTTGGTGATAGGGGAGTGGAGGGGA 1138 | ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1079 TCAAGGACGCAGATGGAGTTCTTCTCCCTGGAGGGTTTGGTGATAGGGGAATAGAGGGGA 1138 Query 1139 TGATTCTTGCAGCAAAATATGCCCGAGAAAACAATATCCCTTTCCTCGGTATCTGTCTCG 1198 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1139 TGATTCTTGCAGCAAAATATGCCCGAGAAAACAGTATCCCTTTCCTCGGTATCTGTCTCG 1198 Query 1199 GGATGCAGATCGCTGTCATCGAGTTTGCACGCTCACTTCTCTGCTTGCCTGATGCAAATA 1258 |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1199 GGATGCAGATCGCTGTTATCGAGTTTTCACGCTCACTTCTCTACTTGCCTGATGCAAATA 1258 Query 1259 GCACAGAGTTTGAACCTGAAACCAAACATCCATGCATCATATTCATGCCTGAGGGCTCCA 1318 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1259 GCACAGAGTTTGAACCTGAAACCAAAAATCCATGCATCATATTCATGCCTGAGGGCTCCA 1318 Query 1319 TAACTCATATGGGAGGCACAATGCGATTAGGTTCGAGAAGAGCCTATTTCCATGACAAGG 1378 |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| | Sbjct 1319 CAACTCATATGGGAGGCACAATGAGATTAGGCTCGAGAAGAGCCTATTTCCATGTCAAAG 1378 Query 1379 AAAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCGATGAAAGGCATCGCCATA 1438 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 ACAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCGATGAAAGGCATCGCCATA 1438 Query 1439 GATATGAGGTGAATCCTGATATGGTTGCAAGCCTTGA-ACAGGCTGGTCTCTCTTTTGCT 1497 ||||||||||||||||||||||||||||| |||| || | |||| ||||||||||||||| Sbjct 1439 GATATGAGGTGAATCCTGATATGGTTGCATGCCTCGAGA-AGGCGGGTCTCTCTTTTGCT 1497 Query 1498 GCAAAAGATGAAACTGGGGAGCGCATGGAGATTGTTGAACTTCCAAGCCACCCTTTCTTC 1557 ||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||| ||| Sbjct 1498 GCAAAAGATGAAACTGGCGAGCGAACGGAGATTGTTGAAGTTCCAAGCCACCCTTTTTTC 1557 Query 1558 ATCGGTGCTCAATTTCATCCCGAGTACAAATCGAGACCCAGGAAAGTATCTCCTCTGTTC 1617 |||||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||| Sbjct 1558 ATCGGTGCTCAATTCCATCCCGAGTACAAGTCGAGACCCGGGAAAATATCTCCTCTGTTC 1617 Query 1618 TTAGGACTAATAGCAGCATCCTGTGGTGAGCTAGATGCAGTCCTGAATCCAGTTTCCATT 1677 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1618 TTAGGACTAATAGCAGCATCATGTGGTGAGCTAGATGCAGTCCTGAATCCAGTTTCCATT 1677 Query 1678 CACCAACACAACCAAA-CAATGTTCTTGGAAAAGAAACAACACATAGGTTGGTCCAAAAA 1736 |||||| ||||||||| || ||| |||||||||||| ||| ||| |||| |||||||||| Sbjct 1678 CACCAAGACAACCAAAACA-TGTACTTGGAAAAGAA-CAAAACAAAGGTCGGTCCAAAAA 1735 Query 1737 A-TGTTTTGGTGATAAAAACCAACAAGAAGAAATCTCAGAAAC 1778 | ||||||||| || ||| |||||||||| | |||||||||| Sbjct 1736 AGTGTTTTGGTAATGAAA-CCAACAAGAA-A--TCTCAGAAAC 1774 > Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1 Length=2460 Score = 1531 bits (829), Expect = 0.0 Identities = 1411/1691 (83%), Gaps = 44/1691 (3%) Strand=Plus/Plus Query 1 ATGAAGTACGTACTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60 ||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||| Sbjct 325 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAGTAACAGCA 384 Query 61 AGCAGTGTTGGTGTCCTTCTTCA-GTCTTGTGGTCTTCGCGTTACTTGTATCAAAATCGA 119 || ||| ||||||| |||||| | | ||||||||||||| ||||||| |||||||||||| Sbjct 385 AGTAGTATTGGTGTTCTTCTTAAAG-CTTGTGGTCTTCGAGTTACTTCTATCAAAATCGA 443 Query 120 TCCGTAT-TTGAACTA-TGATGCTGGAACCATATCCCC-TTACGAACATGGAGAAGTGTT 176 ||| ||| || ||| | ||||||||||||||| || || || ||||| || ||||| || Sbjct 444 TCCTTATCTT-AAC-ACTGATGCTGGAACCATGTCTCCATTT-GAACACGGTGAAGTTTT 500 Query 177 TGTCTTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGA 236 |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| || Sbjct 501 TGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAATTACGAAAGGTTTCTGGA 560 Query 237 TACAACATTAACTC-GAGATAACAATATCACTTAC-GGGAAGATTCAGCGGTATGTGATG 294 || || |||||| | |||| || || |||||| || ||||| ||| | | | |||| || Sbjct 561 TATAAAATTAAC-CAGAGACAATAACATCACT-ACTGGGAAAATTTACCAGCATGTTATT 618 Query 295 GAGAAAGAGAGGAAAGGAGATTACTTAGGGGAA-ACTGTTCAGATTGTTCCTCACGTCAC 353 | |||||||||||||||||||| || ||| || ||||||||| |||||||||| ||||| Sbjct 619 GCTAAAGAGAGGAAAGGAGATTATTT-GGGAAAGACTGTTCAGGTTGTTCCTCATGTCAC 677 Query 354 TGATACAATCCGAGAATGGGTGGAGAGAGTTGCAATGATTCCTGTCGATGGAAAAGAAGG 413 |||| |||| | ||| ||| | ||||||||||| | |||||||| |||||| | || || Sbjct 678 TGATGCAATTCAAGATTGGATTGAGAGAGTTGCGGTTATTCCTGTTGATGGAGAGGAGGG 737 Query 414 TCCTCCTGATGTTTGCATCATTGAGTTAGGTGGAACTATAGGAGATAATGAATCCAG-GC 472 |||| |||||||||| | ||||| ||||||||||||||||| |||| ||||||| | || Sbjct 738 TCCTGCTGATGTTTGTGTTATTGAATTAGGTGGAACTATAGGTGATATTGAATCC-GCGC 796 Query 473 CTTTTGCTGACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGA 532 ||||| ||| || ||| ||||||| || ||| ||||||||| | ||||||||||||| Sbjct 797 CTTTTATTGAGGCGCTTGGCCAATTCTCTTACCGTGTAGGCCCAGGGAATTTCTGTCTGG 856 Query 533 TCCATGTCACCCTCGTGCCTGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACAC 592 ||||||||| ||||||||||||||| | ||||||||||||||||||||| || || |||| Sbjct 857 TCCATGTCAGCCTCGTGCCTGTGCTTAATGTTGTTGGTGAACAGAAAACTAAGCCCACAC 916 Query 593 AGCACAGTATTAAAGATCTACGAGGCTTTGGTTTGACACCTAATATCATAGCTTGTC-GG 651 |||| ||| | || | ||||||||||| || ||||| || ||||| ||||||| | || Sbjct 917 AGCATAGTGTCAAGGGGCTACGAGGCTTGGGCTTGACGCCGGATATCTTAGCTTG-CAGG 975 Query 652 AGCACAAAGGCACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCG 711 |||||||||||||||||||| ||||| |||| ||| ||| ||| |||||| |||| ||| Sbjct 976 AGCACAAAGGCACTTGAAGATAATGTGAAAGAAAAACTAGCTCAATTTTGCCATGTCCCG 1035 Query 712 ATTCAGAACATCTTCTCTCTCTGTGATGTTCCCAACATCTGGCACATTCCTCTGTTGCTC 771 || || | || ||| |||||| ||||||||||||||| ||||| |||||| ||||||| Sbjct 1036 CTTGAGTATATTTTCACTCTCTATGATGTTCCCAACATTTGGCATATTCCTTTGTTGCTA 1095 Query 772 AAGGAGCAGAAGGCTCATGAAGCAATTTCAAAAGTCCTGAACCTTTCTGGTATTGCTAAA 831 ||||| ||||| |||||| | ||| |||||||| || || ||| || ||||| || || Sbjct 1096 AAGGATCAGAAAGCTCATCTGGTAATCTCAAAAGTGCTCAATCTTGCTAGTATT-CTTAA 1154 Query 832 -GAACCTTCT-TTAGAGAAATGGGCATCAATG-G-TAGAAAT-TAGTGACGGTTTAAATG 886 || |||||| || | ||| ||| | || | | | | ||| | | ||||| |||| ||| Sbjct 1155 TGAGCCTTCTCTTGGGGAA-TGGACTTCCA-GAGCT-GAACTAT-GTGACAATTTACATG 1210 Query 887 TACCCGTGAGAATCGCTATCGTGGGGAAATATACAGATCTATCAGATGCCTATCTCTCTG 946 | || |||||||| ||| | |||||||||||||||| || || ||||| |||||||||| Sbjct 1211 TGCCGGTGAGAATTGCTGTTGTGGGGAAATATACAGGCCTCTCTGATGCTTATCTCTCTG 1270 Query 947 TCTTGAAGGCCCTCCTCCATGCTTCTGTGGCTTTTCACAAAAAGCTTGAAGTTGATATGG 1006 |||| ||||| ||| | |||||||||||||||| || ||||||||| | ||||||| ||| Sbjct 1271 TCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGAT-TGG 1329 Query 1007 -TTCCATCGTGTGATCTCGAAAA-GAC-CAAGAAGCAAGAGGATTCACGC-GCATATGAG 1062 ||||| | |||||||||||||| || | || | ||||| || || | || ||| | Sbjct 1330 GTTCCAGCTTGTGATCTCGAAAAAGAAACT-GA-GAAAGAGAATCCA-GATGCGTATAAA 1386 Query 1063 GCTGCTTGGAAGTTACTGAAGGACGCAAATGGAGTTCTTCTCCCTGGAGGGTTTGGTGAT 1122 |||||||||||||| || |||| | | ||||||||||| |||||||||| ||||||||| Sbjct 1387 GCTGCTTGGAAGTTGCTAAAGGGGGTAGATGGAGTTCTTGTCCCTGGAGGTTTTGGTGAT 1446 Query 1123 AGGGGAGTGGAGGGGATGATTCTTGCAGCAAAATATGCCCGAGAAAACAATATCCCTTTC 1182 ||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||| Sbjct 1447 AGGGGAGTGGAAGGGAAGATTCTTGCTGCAAAATATGCCCGTGAAAACAAAATCCCTTTC 1506 Query 1183 CTCGGTATCTGTCTCGGGATGCAGATCGCTGTCATCGAGTTTGCACGCTCACTTCTCTGC 1242 |||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||| Sbjct 1507 CTCGGTATTTGTCTCGGGATGCAGATTGCTGTCATCGAGTTTGCACGATCAGTTCTCTGC 1566 Query 1243 TTGC-CTGATGCAAATAGCACAGAGTTTGAACCTGAAACCAAACATCCATGCATCATATT 1301 |||| | || ||||| |||||||| ||| |||||||||| |||||||| || ||||| || Sbjct 1567 TTGCAC-GACGCAAACAGCACAGAATTTAAACCTGAAACGAAACATCCGTGTATCATTTT 1625 Query 1302 CATGCCTGAGGGCTCCATAACTCATATGGGAGGCACAATGCGATTAGGTTCGAGAAGAGC 1361 |||||| ||||| || | |||||||||||||||||| ||||| ||||| || |||| | | Sbjct 1626 CATGCCCGAGGGTTCGAGAACTCATATGGGAGGCACTATGCGCTTAGGATCAAGAAAATC 1685 Query 1362 CTA-TTTCCATGACAAGGAAAGCAAATCTGCAAGACTATATGGGAACAAAGAGTTTGTCG 1420 || ||| ||| ||| || |||||||| |||| |||||| ||||||||| | ||||||| Sbjct 1686 CTTCTTTA-ATGTCAAAGACAGCAAATCCGCAAAACTATACGGGAACAAAAACTTTGTCG 1744 Query 1421 ATGAAAGGCATCGCCATAGATATGAGGTGAATCCTGATATGGTTGCAA-GCCTTGA-ACA 1478 |||| |||||||| || |||||||||||||||||||||||||||| || ||||||| | | Sbjct 1745 ATGAGAGGCATCGTCACAGATATGAGGTGAATCCTGATATGGTTG-AACGCCTTGAGA-A 1802 Query 1479 GGCTGGTCTCTCTTTTGCTGCAAAAGATGAAACTGGGGAGCGCATGGAGATTGTTGAACT 1538 ||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| ||||||| Sbjct 1803 GGCCGGTCTTTCTTTCGCTGCGAAAGATGAAACTGGCAAACGCATGGAGATCATTGAACT 1862 Query 1539 TCCAAGCCACCCTTTCTTCATCGGTGCTCAATTTCATCCCGAGTACAAATCGAGACCCAG 1598 |||| ||| |||||||| |||||||||||||| || ||||||| |||||| |||||| | Sbjct 1863 ACCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGG 1922 Query 1599 GAAAGTATCTCCTCTGTTCTTAGGACTAATAGCAGCATCCTGTGGTGAGCTAGATGCAGT 1658 ||||| ||||||||||| |||||||| || |||||||| ||||| |||||||| |||| Sbjct 1923 GAAAGCGTCTCCTCTGTTTTTAGGACTCATTGCAGCATCGTGTGGCGAGCTAGACACAGT 1982 Query 1659 CCTGAATCCAG 1669 ||||||||||| Sbjct 1983 CCTGAATCCAG 1993 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67343553160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5