BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34900.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482453 jgi|Araly1|482453|fgenesh2_kg.4__1513__AT2G34900.1 2370 0.0
> Ahg482453 jgi|Araly1|482453|fgenesh2_kg.4__1513__AT2G34900.1
Length=1514
Score = 2370 bits (1283), Expect = 0.0
Identities = 1452/1531 (95%), Gaps = 22/1531 (1%)
Strand=Plus/Plus
Query 1 AGCTGCTGTCTCTTCCGTCTTCGTCCTCCGACCTCTGTCTTTCTTCTG-ATCCTTCGAAA 59
||||| | |||||||||||||| ||||||||||| ||||||||||||| || ||||| ||
Sbjct 1 AGCTGGTATCTCTTCCGTCTTCTTCCTCCGACCTGTGTCTTTCTTCTGAAT-CTTCG-AA 58
Query 60 AAGCTCTCGTGAGTCACTACTCTTCTCTAATGTCTGTACATGTCAAGGAAGAACCTGTGC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAGCTCTCGTGAGTCACTACTCTTCTCTAATGTCTGTACATGTCAAGGAAGAACCTGTGC 118
Query 120 TTGTTCCAAACTGCGATGTCGAGAATACAGAGCTTGCAGTTTTCAATGGAAATGGAGAAA 179
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 119 TTGTGCCAAACTGCGATGTCGAAAATACAGAGCTTGCAGTTTTTTATGGAAATGGAGAAA 178
Query 180 GTGAGCTTGAGAATTTTGGGACTTGCGTAGATGAGATAACAGATAGAGTGAATCAGCTTG 239
||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||
Sbjct 179 GTGAGCTTGAGGATTTCGGAACCTGCGTAGATGAGATAACTGATAGAGTGAATCAGCTTG 238
Query 240 AGCAAAAAGTTGTGGAGGTCGAACACTTTTACTCTACAAAAGATGGAGCTGCTCAAACTA 299
||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||
Sbjct 239 AGCAAAAAGTTGTGGAGGTTGAGCACTTTTACTCTTCAAAAGATGGAGCAGCTCAAACTA 298
Query 300 ACACTTCTAAGAGTAACTCGGGCGGGAAGAAGATCGCTATTTCTCAACCAAACAACTCGA 359
| |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||
Sbjct 299 ATACTTCTAAGAGTAACTCGGGTGGAAAAAAGGTCGCTATTTCTCAACCAAACAACTCGA 358
Query 360 AGGGTAACTCGGCCGGGAAAGAAAAATCAAAGGGAAAACATGTTTCCAGCCCTGACCTTA 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGTGTAACTCGGCCGGGAAAGAAAAATCAAAGGGAAAACATGTTTCCAGCCCTGACCTTA 418
Query 420 TGCGTCAATTTGCAACAATGTTTCGTCAGATTGCTCAACATAAATGGGCATGGCCGTTCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCGTCAATTTGCAACAATGTTTCGTCAGATTGCTCAACATAAATGGGCATGGCCGTTCT 478
Query 480 TGGAGCCTGTTGATGTTAAAGGACTTGGACTACATGATTATTACAAGGTTATAGAGAAGC 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TGGAGCCTGTTGATGTTAAAGGACTTGGACTTCATGATTATTACAAGGTTATAGAGAAGC 538
Query 540 CAATGGACTTGGGAACAATTaaaaaaaaaaTGGAGAGTTCGGAGTATAGCAATGTCAGGG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 CAATGGACTTGGGAACAATTAAAAAAAAAATGGAGAGTTCGGAGTATAGCAATGTCCGGG 598
Query 600 AGATATATGCCGATGTTAGACTAGTTTTCAAGAACGCGATGAGATACAATGAAGAAAAAG 659
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGATATATGCTGATGTAAGACTAGTTTTCAAGAACGCGATGAGATACAATGAAGAAAAAG 658
Query 660 AAGATGTTTATGTGATGGCTGAATCTCTTCTGGAGAAATTTGAGGAGAAATGGCTCCTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGATGTTTATGTGATGGCTGAATCTCTTCTGGAGAAATTTGAGGAGAAATGGCTCCTGA 718
Query 720 TAATGCCTAAACTTGTGGAGGAGGAAAAGAAACAAGTAGACGAAGAAGCGGAGAAGCATG 779
|||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||||
Sbjct 719 TAATGCCTAAACTTGTTGAAGAGGAAAAGAAACAGGCAGACGAAGAAGCCGAGAAGCATG 778
Query 780 CCAATAAGCAGCTTACAATGGAGGCTGCACAAGCGGAAATGGCTAGGGATTTAAGCAACG 839
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAATAAGCAGCTTACTCTGGAGGCTGCACAAGCGGAAATGGCTAGGGATTTAAGCAACG 838
Query 840 AACTATATGAGATTGATCTGCAGCTGGAGAAACTCCGGGAATCAGTAGTTCAGAGATGCA 899
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 AACTATATGAGATCGATCTGCAGCTGGAGAGACTCCGGGAATCAGTAGTTCAGAGATGCA 898
Query 900 GAAAACTGTCCACTCAAGAAAAGAAAGGACTTTCTGCAGCTCTAGGTCGTCTCTCACCTG 959
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GAAAACTGTCTACTCAAGAAAAGAAAGGACTTTCTGCAGCTCTAGGCCGTCTCTCACCTG 958
Query 960 AGGATCTGTCTAAGGCGTTAAAAATGGTTTCAGAGAGCAACCCGAGTTTCCCGGCTGGAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGATCTGTCTAAGGCGTTAAAAATGGTTTCAGAGAGCAACCCGAGTTTCCCGGCTGGAG 1018
Query 1020 CACCAGAAGTCGAGCTTGACATTGATGTTCAGACTGACGTTACATTGTGGAGACTGAAGG 1079
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CACCAGAAGTCGAGCTTGACATCGATGTTCAGACTGATGTTACATTGTGGAGACTGAAGG 1078
Query 1080 TGTTTGTGCAAGAAGCATTGAAAGCAGCTAACAAAAGCTCTGGAGGAACAAACGCTCAAA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 TGTTTGTGCAAGAAGCATTGAAAGCAGCTAACAAAAGCTCTGGAGGAACAAACGCTCAGA 1138
Query 1140 ACAATAACAATACTGGAACTGGAGAGATCAACAAGAACAATGCAAAAAGACGGAGAGAGA 1199
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 ACAATAACAATACCGGAACTGGAGAGATCAACAAGAACAATGCGAAAAGACGGAGAGAGA 1198
Query 1200 TCTCTGATGCAATCAATAAAGCTTCAATTAAAAGAGCTAAGAAAGCTTGAATCTCTCTCT 1259
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1199 TCTCTGATGCAATCAATAAAGCTTCAATTAAAAGAGCTAAGAAGGCTTGAATCTTTCTCT 1258
Query 1260 ATCTCT-TGATGTGTTTATTGATACAG-AAGGAACAAGAGTTTGGTGAACACCAATCTAA 1317
||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1259 CTCTCTCTC-TGTGTTTATTGAT-CAACAAGGAACAAGAGTTTGGTGAACACCAATCTAA 1316
Query 1318 ATTAGAAACTTTCCAGTTCCATTGCGCATGTTGCTTCAAATGTTGAGCACAATGTAAAAA 1377
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1317 ATTAGAAACTTTCCAGTTCCATTGCGCATGTTGCTTCAAATGTTG-GCACTATGTAAAAA 1375
Query 1378 AGAATGAATGGGaaaaaaaTCTGAGCTATAGAGGAGATATA-AAGAAGACTGCTTGAGGG 1436
|||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |
Sbjct 1376 AGAATGAATGTGAAAAAAATCTGAGCTAGAGAGGAGATATATAAAAAGACTGCTTG-G-- 1432
Query 1437 AGAAATTCTGACAAATCTTCTAATAAAATCTTCAGTTTGAGAGATCTTTGGTGTGTTGAA 1496
|| | || || ||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1433 AGCA-----GA-AA-TCT---AATAAGATCTTCAGTTTGAGAGATCTTTGGTTTGTTGAA 1482
Query 1497 CGTTTCTTCGATTTCATTACCTTAAACCTCG 1527
|||||||||| ||||||||||||||||||||
Sbjct 1483 CGTTTCTTCGCTTTCATTACCTTAAACCTCG 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5