BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34910.1 Length=1329 Score E Sequences producing significant alignments: (Bits) Value Ahg934100 jgi|Araly1|934100|scaffold_402088.1 1434 0.0 Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1 102 6e-21 > Ahg934100 jgi|Araly1|934100|scaffold_402088.1 Length=915 Score = 1434 bits (776), Expect = 0.0 Identities = 868/913 (95%), Gaps = 3/913 (0%) Strand=Plus/Plus Query 79 TCTTAAGATTTCTGACTTTGTTATGTCTCCTCCAGCATTGGTTGTGTTTGAAGATGGTTT 138 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 4 TCTTAAGATTTCTGAGTTTGTTATGTCTCCTCCAGCATTGATTGTGTTTGAAGATGGTTT 63 Query 139 AACCCAAAAATGGAGCAACGACGAGTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 198 || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 64 AATCCAGAAATGGAGCAACGACGATTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 123 Query 199 TAACCCTAATATTAATTTCTTGGTGCAGAAGGCGACTCTGCAGAACCAGATGACTGTCTC 258 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| Sbjct 124 TAACCCTAATATTAATTTCTTGGTGAAGAAGGCGGCTCTGCAGAACCAGATGACCGTCTC 183 Query 259 TCGCCCATC-GCTGAACGAAGAGAGCTTCAGAATGGTCTTACCTCTGGCAATGTCTCCGC 317 ||||||||| | ||||||| || ||||||||||||||||||||||| || |||||||||| Sbjct 184 TCGCCCATCAG-TGAACGACGAAAGCTTCAGAATGGTCTTACCTCTTGCGATGTCTCCGC 242 Query 318 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCTGAGCCGATGATGAAACCACGGAAGA 377 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 243 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCCGAGCCGATGATGAGACCACGGAAGA 302 Query 378 AGCTTAGCCACCAAGAATCCATGCTTTCTCTACGAAAATCTCGGTATCCCGAGAAAAACT 437 ||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||| Sbjct 303 AGCTTAGCCACCAAGAATCAATGCTTTCTATACGAAAATATAGGTATCCCGAGAAAAACT 362 Query 438 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCGTTCTGTTTATCCCTCCCCGGGTTTG 497 |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 363 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCCTTCTGTTTATCCTTCCCTGGGTTTG 422 Query 498 GAAAAAGACCTGTGCGATCACCAAAAAGCGAGGACTCTATAAAGAAGAAAATGATCAAAG 557 |||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 423 GAAAAAAACTTGTGAGATCACCAAAAAGCGAGGATTCTATAAAGAAGAAAATGATCAAAG 482 Query 558 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTAGAGAAATTCGAATGTG 617 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 483 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTCGAGAAATTCGAATGTG 542 Query 618 GATCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATATCGATCTAC 677 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 543 GCTCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATTTCGATCTGC 602 Query 678 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 662 Query 738 TCTTTGACAAGGAAACAGGAAGTCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 797 |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 663 TCTTTGACAAAGAAACGGGAAATCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 722 Query 798 TGTCTGGAAGACAATTAAGGGATTTGGCTGAGACATCCCCGCAACGCCGTGTCAGATTCT 857 |||| ||||||||| ||||||||| || ||||||||||||||||||||||||||||||| Sbjct 723 TGTCGGGAAGACAACTAAGGGATTCAGCGGAGACATCCCCGCAACGCCGTGTCAGATTCT 782 Query 858 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCGCGAACATGTATTACCCCAAGACTGT 917 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 783 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCACGAACATGTATTACCCCAAGACTGT 842 Query 918 TGAAAGCTAGAGATGACTTCAATACGTTCTTAGCAGCACAGAACGCGTGAAACACACACA 977 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct 843 TGAAAGCTAGAGATGATTTCAATACCTTCTTAGCAGCACAGAACGCGTGAAACACACAAA 902 Query 978 A-AATaaaaaaaa 989 | || |||||||| Sbjct 903 ACAACAAAAAAAA 915 > Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1 Length=2571 Score = 102 bits (55), Expect = 6e-21 Identities = 68/74 (92%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 1257 AGATTGGTACATACAACAGA-ATATAGAATAATCGGTAAATACTAAACCTCGTACATTCT 1315 ||||||||||| |||| | | ||||||||||| ||||||||||||||||||||||||||| Sbjct 2570 AGATTGGTACACACAA-AAACATATAGAATAAACGGTAAATACTAAACCTCGTACATTCT 2512 Query 1316 ACAAATCCTGTTCC 1329 ||||||||| |||| Sbjct 2511 ACAAATCCTATTCC 2498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49712283768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5