BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34910.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934100 jgi|Araly1|934100|scaffold_402088.1 1434 0.0
Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1 102 6e-21
> Ahg934100 jgi|Araly1|934100|scaffold_402088.1
Length=915
Score = 1434 bits (776), Expect = 0.0
Identities = 868/913 (95%), Gaps = 3/913 (0%)
Strand=Plus/Plus
Query 79 TCTTAAGATTTCTGACTTTGTTATGTCTCCTCCAGCATTGGTTGTGTTTGAAGATGGTTT 138
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 4 TCTTAAGATTTCTGAGTTTGTTATGTCTCCTCCAGCATTGATTGTGTTTGAAGATGGTTT 63
Query 139 AACCCAAAAATGGAGCAACGACGAGTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 198
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 64 AATCCAGAAATGGAGCAACGACGATTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 123
Query 199 TAACCCTAATATTAATTTCTTGGTGCAGAAGGCGACTCTGCAGAACCAGATGACTGTCTC 258
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 124 TAACCCTAATATTAATTTCTTGGTGAAGAAGGCGGCTCTGCAGAACCAGATGACCGTCTC 183
Query 259 TCGCCCATC-GCTGAACGAAGAGAGCTTCAGAATGGTCTTACCTCTGGCAATGTCTCCGC 317
||||||||| | ||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct 184 TCGCCCATCAG-TGAACGACGAAAGCTTCAGAATGGTCTTACCTCTTGCGATGTCTCCGC 242
Query 318 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCTGAGCCGATGATGAAACCACGGAAGA 377
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 243 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCCGAGCCGATGATGAGACCACGGAAGA 302
Query 378 AGCTTAGCCACCAAGAATCCATGCTTTCTCTACGAAAATCTCGGTATCCCGAGAAAAACT 437
||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||
Sbjct 303 AGCTTAGCCACCAAGAATCAATGCTTTCTATACGAAAATATAGGTATCCCGAGAAAAACT 362
Query 438 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCGTTCTGTTTATCCCTCCCCGGGTTTG 497
|||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||
Sbjct 363 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCCTTCTGTTTATCCTTCCCTGGGTTTG 422
Query 498 GAAAAAGACCTGTGCGATCACCAAAAAGCGAGGACTCTATAAAGAAGAAAATGATCAAAG 557
|||||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 423 GAAAAAAACTTGTGAGATCACCAAAAAGCGAGGATTCTATAAAGAAGAAAATGATCAAAG 482
Query 558 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTAGAGAAATTCGAATGTG 617
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 483 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTCGAGAAATTCGAATGTG 542
Query 618 GATCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATATCGATCTAC 677
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 543 GCTCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATTTCGATCTGC 602
Query 678 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 662
Query 738 TCTTTGACAAGGAAACAGGAAGTCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 797
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCTTTGACAAAGAAACGGGAAATCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 722
Query 798 TGTCTGGAAGACAATTAAGGGATTTGGCTGAGACATCCCCGCAACGCCGTGTCAGATTCT 857
|||| ||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 723 TGTCGGGAAGACAACTAAGGGATTCAGCGGAGACATCCCCGCAACGCCGTGTCAGATTCT 782
Query 858 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCGCGAACATGTATTACCCCAAGACTGT 917
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 783 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCACGAACATGTATTACCCCAAGACTGT 842
Query 918 TGAAAGCTAGAGATGACTTCAATACGTTCTTAGCAGCACAGAACGCGTGAAACACACACA 977
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 843 TGAAAGCTAGAGATGATTTCAATACCTTCTTAGCAGCACAGAACGCGTGAAACACACAAA 902
Query 978 A-AATaaaaaaaa 989
| || ||||||||
Sbjct 903 ACAACAAAAAAAA 915
> Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1
Length=2571
Score = 102 bits (55), Expect = 6e-21
Identities = 68/74 (92%), Gaps = 2/74 (3%)
Strand=Plus/Minus
Query 1257 AGATTGGTACATACAACAGA-ATATAGAATAATCGGTAAATACTAAACCTCGTACATTCT 1315
||||||||||| |||| | | ||||||||||| |||||||||||||||||||||||||||
Sbjct 2570 AGATTGGTACACACAA-AAACATATAGAATAAACGGTAAATACTAAACCTCGTACATTCT 2512
Query 1316 ACAAATCCTGTTCC 1329
||||||||| ||||
Sbjct 2511 ACAAATCCTATTCC 2498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5