BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34920.1
Length=2647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1 3644 0.0
> Ahg482456 jgi|Araly1|482456|fgenesh2_kg.4__1516__AT2G34920.1
Length=2571
Score = 3644 bits (1973), Expect = 0.0
Identities = 2407/2611 (92%), Gaps = 51/2611 (2%)
Strand=Plus/Plus
Query 18 TTTCTTTTACTGGTCTCTCTCTCTATAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 77
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTTTTACTACTCTCTCTCTCTGTAAGAAACCCTTCTAAAAATAGATAAAACAAAACA 60
Query 78 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTGGTCTTTCGAGTCTAACACCACT 137
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 61 CTGTTGCACTTGAAATTCTGTTTCTTCATGGTTACCTTGTCCTTCGAGTCTAACACCACT 120
Query 138 CGTCGTTACTCTGTTTTTAGCTGAAAC-AACGAGAAATTTTAGTGTCTTCAGTAATCAAA 196
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 121 CGTCGTTACTCTGTTTTTAGCTGAAACAAACGAGAAAATTTAGTGTCTTCAGTAATCAAA 180
Query 197 AACCAACTTCTCtttttttttctttttCATTTGAAGAGAGAAAGGTTTTGATTTCTATTT 256
||||||| | | ||| |||||| ||| | |||||||||||||||||||||| || ||||
Sbjct 181 AACCAAC-T-T-TTTCTTTTTC-TTTCCCTTTGAAGAGAGAAAGGTTTTGA--TC-ATTT 233
Query 257 CATTTCATAAGAATTAAGATCCAAATCAAAGATGGGTCTTTGTGTTTGTGATCGTTGACA 316
| | |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 234 C----C--------TAAGATCCAAATCAAAGATGGGGCTTTGTGTTTGTGATCGTTGACA 281
Query 317 AATAGGTCAATTAGCTTAAGGAAAATGGCCTCGTTACGACCTAGTTTTGGATCTGTTCTT 376
|||||||||||| |||||| |||||||||||||||||||||||| || ||||| | |||
Sbjct 282 AATAGGTCAATTGGCTTAAAGAAAATGGCCTCGTTACGACCTAGCTTCGGATCCATCCTT 341
Query 377 AGAGATCGCAACCAACGGCACAATGACGATGTTGTTTTCAAGAAGAATCTGAAAGCTCAA 436
||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 342 AGAGATCGCAACCAACGGCACAATGACGACGTTGTTTTC------AA---GAAAGCTCAA 392
Query 437 GTGAAAACTGCTCCTCCGGCCATCTCCGACGAGAGCTCGGAGAACAGAGTTGATTCTTTG 496
||||||||||||||||| || |||||||||||||| || | ||||||||||||||||||
Sbjct 393 GTGAAAACTGCTCCTCCTGCGATCTCCGACGAGAGTTCTCAAAACAGAGTTGATTCTTTG 452
Query 497 ATCGGAAACAAGCGGAAAAAGAACAATAAAAGCCGTCCTGGATCGCCGGAGAAACCACGG 556
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 453 ATCGGAAACAAGCGGAAAAAGAACAACAAAAGCCGTCTTGGATCGCCGGAGAAACCACGT 512
Query 557 ACTAGAAAAG-GAAACAACTTTTCCGACAATCTTGGAGGAGCTTCTTCTCTTGTGCAGAT 615
|| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 513 ACCAGAAAAGTG-AACAACTTTTCCGACAATGTTGGAGGAGCTTCTTCTCTTGTGCAGAT 571
Query 616 ATGGGAGGCGAGGCTAAATCGATCCAACGGCGGAAACTCGGCTATCCATAGCCAATCAAT 675
||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 572 ATGGGAGGCGAGGCTTAATCGATCCAACGGCGGAAACTCGCCGATCCATGGCCAATCTAT 631
Query 676 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATACACCTTTTAGCTCCATCCATCGACGG 735
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||
Sbjct 632 AGAGATCAGCTCAGAAGCGAGCGTTCAAGAAATCCACATTTTGGCTCCATCCATCGAGGG 691
Query 736 AGAATCTGAATCAGAGAACGAATCCAAGAGTCCTGATCAGACGGTGGAGATTGAATCTGG 795
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 692 AGAATCTGAATCAGAGAACGAATCAAAGAGTCCTGATCTGACGGTGGAGATTGAATCTGA 751
Query 796 GACTCTCAATTCGGTTTCTGATATTATCCGGAGATTGAGTAACGAACAGAAGCTAACCGC 855
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 752 GACACTCAATTCGGTTTCTGATATTATCCAGAGATTGAGTAACGAACAGAAGCTAACCGC 811
Query 856 CAGCAATAATGGCGGTGCAGTCGATATGCCGATCGTTAAAACGCCGACGCTGGAGAAAAG 915
|||||||||||||||||| | ||| || ||||||||||||||||| |||| |||||||||
Sbjct 812 CAGCAATAATGGCGGTGCCGCCGACATACCGATCGTTAAAACGCCCACGCAGGAGAAAAG 871
Query 916 CAGTTTTCAGGTGGTTACTTGCTCTCCGCGAATT-CGAGGAAGGCAAGCTTACTCCGATC 974
|||||||| ||| |||||||| || ||||| ||| |||||| ||||||||||||||||||
Sbjct 872 CAGTTTTCCGGTAGTTACTTGTTCGCCGCG-ATTCCGAGGACGGCAAGCTTACTCCGATC 930
Query 975 TGCTTGTGCATCTGGAACGCGAACGTCACCGCGAATTGGAATCACTTCTTGGACGCAACG 1034
||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 931 TGCTTGTGCATTTGGAACGAGAACGTCACCGCGAATTGGAATTGCTTCTTGGACGCAACG 990
Query 1035 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CAGTTTCTAGGTTTCCTCAACGTGGTCGCCTCCAGTCAATGTTGCGGCTAAGGAGTCTCA 1050
Query 1095 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACAAAAAGCGATTTGAATCGCT 1154
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||
Sbjct 1051 AACGCGGCCTAGCGATTCAAGATCGTCATCGTGGTACCACGAAAGGCGATTCAAATCGCT 1110
Query 1155 TCCAACCTAGTTCTACAATTCTCCATCTAAGAGAAAAACTCCGGGAAAAAGCAGCAAACG 1214
|||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||
Sbjct 1111 TCCAACCTAGTTCTACAATTCTTCATCTAAGCGAAAAATTCCGGGAAAACGCAGCAAACA 1170
Query 1215 CTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGC 1274
||| |||||||||| || ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1171 CTGACGCTGAAGCCAAACAAAAGAAGGGCCAACAATACACCGTAGAAACAGAGAGCATGG 1230
Query 1275 AGTCAAAAGAAACCAGTGGTATTCTTCATTCTCCTTCTACAGAGCGGTTAAGTCCTCAAA 1334
||||||||||| | | || | || || | ||||| |||||||| ||||| |||||||
Sbjct 1231 GGTCAAAAGAAATGACTTTTACTATTGATACGCCTTCCACAGAGCGATTAAGCCCTCAAA 1290
Query 1335 AACGCAACATAGAGGAAGCAATCTTACGCAAGAACGAAACTGAAACCAAAATGAGTTACC 1394
| || ||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 1291 ACCGTAACATAGAGGAAGCAATCTTACGCAAGAACGAAAC--AAA--AA--TGAATTACC 1344
Query 1395 TTCAGCTGAAAAAAGCCATAGTAGCAGAAGTATTGGAAAGAGAATCTGATAACACTAGTC 1454
|||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||| |
Sbjct 1345 TTCAGCTGAACAAAGCCATAGTAGCAGAAGTTTTGAAAAGAAAATCTGATAACACTAGCC 1404
Query 1455 CTCTCACCAGCGTAACTCCTCAAGAACCGCGGATACTAAGGAACGAGGAAGCGGGGAAAC 1514
|| ||||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||
Sbjct 1405 CTATCACCAGCGTAACTCATCAAGAACCGCGGATACTAGGGAAGGAGCAAGCGAACAAAG 1464
Query 1515 TAGAAAGCGGTACAG-AGGGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAATGTCA 1573
|||||||| |||| | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1465 TAGAAAGCAGTAC-GCAGAGAACTCAAGAGACACCGTTCCTTGAGACACAAGAAACGTCA 1523
Query 1574 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 TTCCAAAGCGGATGGGAAGAGCAAGAAGAGTATGAGGATGAGCAGTCTTATTACGGAGAC 1583
Query 1634 ATGAGCTATGACTGGTTTACAGAAATATCTAGGCCTCGGACTTATTGGGAAGATCTGAGG 1693
|||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1584 ATGAGCTACGATTGGTTTACAGAAATATCTCGGCCTCGGACTTACTGGGAAGATCTGAGG 1643
Query 1694 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTT 1753
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1644 AAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGGCGATATATGCAGACTT 1703
Query 1754 CTTGAGAGAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1813
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1704 CTTGAGAGAAGAACCGTTTCGGATTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAG 1763
Query 1814 CTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAAGCAACTAAAGAG 1873
||||||||| |||||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 1764 CTCATAATGGCCCGTGTTCAGATACATCCGGCTCACCGTATTCCACAAGCATGTAAAGAA 1823
Query 1874 GAAGAGAAATATGACATAGGAGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1933
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1824 GAAGAGAAATGTGACATAGGCGAAGAAAAAGATGAAGACAGAGATGACTTGAGCCAATCA 1883
Query 1934 TCATCACAGATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCTGGACACAGGAGTT 1993
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1884 TCATCACAAATATTTGCACCGTCTCCGGCAGGATCATGGAGTTCTCAGGACACAGGAGTT 1943
Query 1994 ACTTCCACACCAACGCACAATCTTCATTCCACTCTCCAACTAGAAATGTCTGAGCTACGA 2053
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1944 ACTTCCACACCAACGCACAATCTTCATTCCAATCTCCAACTAGAAATGTCTGAGCTACGA 2003
Query 2054 GACTCTGTCAAAACGTGTTTGGACGTCAATGCTAGCCTTCAAAAGTCGGTTCACCTGGAA 2113
|||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||
Sbjct 2004 GACTCTGTCAAAACGTGTTTGGACGTAAACGCTAGCCTTCAAAAGTCGGTTCAGCGGGAA 2063
Query 2114 AATCCCTTTAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2173
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 AACCCCTTGAAACGCAAATGCTGCGTTTGTAACGAAACGCAAGTTGAAACACTTTTATAC 2123
Query 2174 AGGTGTGGGCACATGTGCACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2233
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 AGGTGCGGGCACATGTGTACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGG 2183
Query 2234 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 AAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGCGTTTTCGTCGATTCAAGA 2243
Query 2294 ACCTGAAATTCATAAAACCAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2353
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 ACCTGAAATTAATAATACAAAGGGTTCAAAACGCTAACAATACTTCACTTTATCTATAAC 2303
Query 2354 ATGtttt-tttt---A-TTCCTCTGTTTGCTTTCAAGTTTGACTGGAGCGCGTTTGCGTT 2408
| ||||| |||| | ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2304 ACGTTTTCTTTTTTCAGTTCCTCTGTTTGCTTTCAAGTCTGACTGG--CGCGTTTGCGTT 2361
Query 2409 TTGGATCTGCGTCCAAGATTCATACCTATGGTTTTTATAGGTGAATCACTAACCCAATCT 2468
|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 2362 TTGGATCTGCGTCCGAGATTCATATCTATGCTTTTTATAGGTGAATCACTAACCAAATCT 2421
Query 2469 ATTTTCTTGACGTTGAAGTTTTCGTCTTGTAAAAATACTCTACACATGCCTCCTTTCACT 2528
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 2422 ATTTTCTTGACGTTGAAGTTTGCGTCTTGTAAAGATACTCTACATATGCCTCCTTTCACT 2481
Query 2529 TTCCTTTCCATCAATTTGGAACAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGAT 2588
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2482 TTCCTT-CCATCAAATTGGAATAGGATTTGTAGAATGTACGAGGTTTAGTATTTACCGTT 2540
Query 2589 TATTCTATAT-TCTGTTGTATGTACCAATCt 2618
|||||||||| | | |||| |||||||||||
Sbjct 2541 TATTCTATATGTTT-TTGTGTGTACCAATCT 2570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99834532145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5