BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34925.1

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482457 jgi|Araly1|482457|fgenesh2_kg.4__1517__AT2G34925.1         399    4e-111
  Ahg481080 jgi|Araly1|481080|fgenesh2_kg.4__140__AT2G34925.1          303    3e-82 


> Ahg482457 jgi|Araly1|482457|fgenesh2_kg.4__1517__AT2G34925.1
Length=267

 Score =  399 bits (216),  Expect = 4e-111
 Identities = 250/267 (94%), Gaps = 0/267 (0%)
 Strand=Plus/Plus

Query  1    ATGAGATCTCCTCACATCACCATTTCACTTGTTTTCTTGTTCTTTCTTTTTCTAATCATC  60
            ||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||||| ||
Sbjct  1    ATGAGATCTCCTCACATCATCATTTCACTTGTTCTCTTCTTCTTCCTTTCTCTAATCCTC  60

Query  61   CAAACCCATCAAAGAACCATTGATCAAACTCACCAGATTGGCTCCAATGTTCAACATGTC  120
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | 
Sbjct  61   CAAACCCACCAAAGAACCACTGATCAAACTCACCAGATTGGCTCCAATGTTCAACATTTT  120

Query  121  AGTGACATGGCGGTGACTTCGCCTGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGG  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  AGTGACATGGCGGTGACTTCGCCGGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGG  180

Query  181  CCGATGACGACATGGCTGAAGGGAAAGATGATCGGTGCCAATGAACATGGAGTCCCAAGT  240
            |||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct  181  CCGATGACAACATGGCGGAAGGGGAAGATGCTCGGTGCCAATGAACATGGAGTCCCAAGT  240

Query  241  GGTCCAAATCCCATCTCCAATAGGTAG  267
            |||||||||||||| || |||||||||
Sbjct  241  GGTCCAAATCCCATTTCGAATAGGTAG  267


> Ahg481080 jgi|Araly1|481080|fgenesh2_kg.4__140__AT2G34925.1
Length=219

 Score =  303 bits (164),  Expect = 3e-82
 Identities = 192/206 (93%), Gaps = 0/206 (0%)
 Strand=Plus/Plus

Query  62   AAACCCATCAAAGAACCATTGATCAAACTCACCAGATTGGCTCCAATGTTCAACATGTCA  121
            |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| || 
Sbjct  14   AAACCCATCAAAGAACTATTGATCAAACTCACCGGATTAGCTCCAATGTTCAACATATCC  73

Query  122  GTGACATGGCGGTGACTTCGCCTGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGGC  181
            |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct  74   GTGACATGGCGGCGACTTTGCCGGAAGGGAAAAGAAGAGAGAGGTTTAGAGTTCGGCGGC  133

Query  182  CGATGACGACATGGCTGAAGGGAAAGATGATCGGTGCCAATGAACATGGAGTCCCAAGTG  241
            |||||||||| |||| |||||| |||||| ||||||||| |||||||||||| |||||||
Sbjct  134  CGATGACGACTTGGCGGAAGGGGAAGATGCTCGGTGCCAGTGAACATGGAGTTCCAAGTG  193

Query  242  GTCCAAATCCCATCTCCAATAGGTAG  267
            ||||||||||||||||||||||||||
Sbjct  194  GTCCAAATCCCATCTCCAATAGGTAG  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9317935684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5