BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34930.1
Length=2839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482458 jgi|Araly1|482458|fgenesh2_kg.4__1518__AT2G34930.1 4276 0.0
Ahg899503 jgi|Araly1|899503|Al_scaffold_0004_153 699 0.0
Ahg899504 jgi|Araly1|899504|Al_scaffold_0004_154 303 3e-81
> Ahg482458 jgi|Araly1|482458|fgenesh2_kg.4__1518__AT2G34930.1
Length=2824
Score = 4276 bits (2315), Expect = 0.0
Identities = 2656/2821 (94%), Gaps = 22/2821 (1%)
Strand=Plus/Plus
Query 26 TCAAGCTAAGGCCTA-GCTTCTTCATCT-CTTTTCTGATTCTCATT-TTACTTCTCAAAA 82
||||||| ||||| | |||| ||||||| || || || ||||| || |||||||||||||
Sbjct 14 TCAAGCTCAGGCC-ACGCTTTTTCATCTCCTCTT-TGTTTCTC-TTCTTACTTCTCAAAA 70
Query 83 ATCTTAAT-TACGGATCTGCAGCTAGTCCGAAATGCATATCCACCGAGCGGCAAGCTCTT 141
||| |||| | ||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 71 ATCCTAATCT-TGGATCTGCAGCTAATCCTAAATGCATATCCACCGAGCGACAAGCTCTT 129
Query 142 CTCACCTTCAGAGCAGCACTAACTGATCTTTCGAGTAGGCTCTTTTCTTGGTCCGGACCT 201
||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 130 CTCACCTTCAGAGCATCACTAACTGATCTTTCGAGTAGACTCTTTTCTTGGTCTGGACCT 189
Query 202 GACTGCTGCAACTGGCCCGGTGTTCTTTGCGATGCTCGGACCAGCCACGTTGTCAAGATT 261
|||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 190 GACTGCTGCAACTGGCCCGGTGTTCTTTGCGACGCTCGAACCAGCCGCGTCATCAAGATT 249
Query 262 GATCTCAGAAACCCGAGTCAAGATGTTCGCTCTGATGAGTATAAAAGAGGTTCCTTGCGA 321
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 250 GATCTCAGAAACCCGAATCAAGATGTTCGCTCCGATGAGTATAAAAGAGGTTCCTTGCGA 309
Query 322 GGGAAGATACATCCGTCTTTGACTCAACTCAAGTTCTTGAGCTATCTGGACTTGAGTTCA 381
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGTAAGTTACATCCGTCTTTGACTCAACTCAAGTTCTTGAGCTATCTGGACTTGAGTTCA 369
Query 382 AATGATTTCAATGAACTAGAGATTCCTGAGTTTATTGGCCAAATTGTTAGTCTAAGGTAC 441
||||||||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||
Sbjct 370 AATGATTTCAATGGACTGGAGATCCCCGAGTTTATTGGCCAAATCGCTAGTCTAAGGTAC 429
Query 442 CTGAATCTTTCTTCCTCATCGTTTTCCGGCGAAATCCCAACGAGTCTTGGAAATTTGTCG 501
|||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct 430 CTGAATCTTTCTTCCTCATCGTTTTCTGGCGAGATTCCTGCGAGTCTTGGGAATTTGTCT 489
Query 502 AAGCTGGAGTCTCTTGATCTGTATGCAGAGTCGTTTGGTGACTCTGGTACATTAT-CATT 560
||||||||||| ||||||||||| || ||||||||||||||||||||||| || | | ||
Sbjct 490 AAGCTGGAGTCACTTGATCTGTACGCTGAGTCGTTTGGTGACTCTGGTACGTT-TGCTTT 548
Query 561 GCGCGCAAGCAATCTCCGGTGGCTTTCAAGTCTGTCTTCTTCCCTGAAGTATCTCAACAT 620
|||||||||||| ||| ||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 549 GCGCGCAAGCAACCTCGGGTGGCTTTCAGGTCTGTCTTCTTCTCTCAAGTACCTCAACAT 608
Query 621 GGGGTATGTAAATCTAAGTGGTGCGGGTGAAACCTGGTTACAGGATTTCAGCAGAATCTC 680
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 609 GGGGTATGTGAATTTGAGTGGTGCGGGTGAAACCTGGTTACAGGATTTCAGCAGAGTCTC 668
Query 681 GGCGCTAAAGGAGTTGCATTTGTTCAA-TAGTGAGCTCAAGAACTTACCTCCCACCTTGT 739
||||||||||||||||| ||||||||| | ||||||||||||||||||||||| | || |
Sbjct 669 GGCGCTAAAGGAGTTGCGTTTGTTCAACT-GTGAGCTCAAGAACTTACCTCCCTCATTAT 727
Query 740 CTTCGTCTGCGGATCTGAAGCTCCTTGAAGTTCTTGATTTGTCTGAAAACTCTCTCAATT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CTTCGTCTGCGGATCTGAAGCTCCTTGAAGTTCTTGATTTGTCTGAAAACTCTCTCAATT 787
Query 800 CGCCGATACCTAACTGGCTATTTGGTCTTACCAACCTCAGAAAGCTATTCCTCAGATGGG 859
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 788 CGCCGATACCCAAGTGGCTATTTGGTCTCACCAACCTCAGAAAGCTATTCCTCAGATGGG 847
Query 860 ATTTTCTCCAGGGTTCGATTCCTACGGGGTTCAAGAACTTGAAGCTTCTAGAGACACTTG 919
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 848 ATTTTCTCCAGGGTTCGATTCCTTCAGGGTTCAAGAACTTGAAGCTTCTAGAGACACTTG 907
Query 920 ATCTGTCGAATAATCTGGCACTACAAGGCGAGATTCCATCGGTTCTTGGAGACCTTCCTC 979
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 908 ATCTGTCAAATAATCTGGCACTACAGGGCGAGATTCCATCGGTTCTTGGAGATCTTCCTC 967
Query 980 AACTGAAGTTTCTTGACCTTTCTGCAAACGAACTCAACGGTCAAATCCATGGGTTTCTAG 1039
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 968 CACTGAAGTTTCTTGACCTTTCTGCTAACGAACTCAATGGTCAAATCAATGGGTTTCTAG 1027
Query 1040 ACGCCTTCTCCAGAAACAAAGGAAACAGCTTGGTCTTTCTCGATCTCAGTTCCAACAAGT 1099
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1028 ACGCCTTCTCCAGAAACAAAGGCAACAGCTTGGTCTTTCTCGATCTCAGTTCCAACAAGT 1087
Query 1100 TAGCTGGGACATTGCCCGAGTCACTTGGATCGTTGAGGAATCTGCAGACTCTGGATCTTT 1159
|||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |
Sbjct 1088 TAGCTGGGACATTGCCCGAGTCGCTTGGAGCGTTGAGGAATCTGCAGATTCTGGATCTAT 1147
Query 1160 CATCGAATTCCTTCACGGGTTCGGTCCCTTCCTCGATAGGAAACATGGCGTCACTGAAGA 1219
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1148 CATCGAATTCCTTCACGGGTTCGCTCCCTTCCTCGATAGGAAACATGGCGTCACTGAAGA 1207
Query 1220 AACTTGATCTTTCTAACAATGCCATGAACGGGACAATTGCGGAAAGCTTGGGGCAGCTTG 1279
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1208 AACTTGATCTTTCTTACAATGCTATGAACGGGACAATCGCGGAAAGCTTGGGGCAGCTTG 1267
Query 1280 CAGAGCTTGTGGATCTGAACTTGATGGCGAATACATGGGGAGGCGTTCTGCAAAAGTCAC 1339
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1268 CGGAGCTTGTGGATCTGAACTTGATGGCAAATACATGGGGAGGTGTTCTGCAAAAGTCCC 1327
Query 1340 ATTTCGTGAATCTCAGAAGCTTGAAAAGCATCCGTCTAACAACTGAACCATACAGATCTC 1399
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1328 ATTTCGTGAATCTCACAAGCTTGAAAAGCATCCGTCTCACAACTGAACCATACAGATCTC 1387
Query 1400 TTGTCTTCAAGTTACCATCTACTTGGATTCCTCCTTTCAGACTGGAGTTGATCCAAATCG 1459
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TTGTCTTCAAGTTACCATCTGCTTGGATTCCTCCTTTCAGACTGGAGTTGATCCAAATCG 1447
Query 1460 AGAACTGTCGGATCGGT-C-T-GTTTCCAATGTGGCTCCAAGTACAAACCAAGCTCAACT 1516
||||||| ||||||||| | | |||||||||||||| ||||||||||||||||||||||
Sbjct 1448 AGAACTGCCGGATCGGTCCTTCCTTTCCAATGTGGCTTCAAGTACAAACCAAGCTCAACT 1507
Query 1517 TTGTCACACTCAGAAACACTGGTATTGAAGATACAATACCGGATAGCTGGTTCTCTGGAA 1576
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 1508 TTGTTACACTCAGAAACACTGGAATTGAAGATACAATACCCGATAGCTGGTTCGCAGGAA 1567
Query 1577 TCTCTTCTAAAGTTACTTACCTAATTCTAGCAAACAACAGAATCAAAGGTAGATTACCTC 1636
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1568 TCTCTTCTGAAGTAACTTACCTGATTCTAGCAAACAACAGAATCAAAGGTAGATTACCTC 1627
Query 1637 AAAAGCTTGCGTTCCCAAAGTTAAACACCATTGATTTGAGCTCCAACAACTTTGAAGGCA 1696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 AAAAGCTTGCGTTCCCAAAGTTAAACACCATTGATTTGAGCTCCAACAACTTTGAAGGCC 1687
Query 1697 CTTTTCCTCTCTGGTCTACAAACGCAACAGAGCTGCGTCTTTACGAGAACAACTTCTCGG 1756
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1688 CTTTTCCTCTCTGGTCAACAAACGCAACAGAGCTGCGTCTTTATGAGAACAACTTCTCGG 1747
Query 1757 GTTCTCTTCCACAAAACATTGACGTCTTGATGCCAAGAATGGAGAAGATCTACCTCTTTA 1816
|||||||||||| || ||||| ||||||||||| ||||| |||| ||||||||||||
Sbjct 1748 GTTCTCTTCCACTTAATATTGATGTCTTGATGCCGGGAATGCAGAAAATCTACCTCTTTC 1807
Query 1817 GCAACAGCTTCACAGGCAACATCCCATCGTCTCTATGTGAAGTCTCCGGACTGCAAATTC 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 GCAACAGCTTCACAGGCAACATCCCATCGTCTCTATGTGAAGTCTCCGGACTGCAAATTC 1867
Query 1877 TGTCACTGAGGAAGAACCATTTCTCTGGTAGTTTTCCAAAATGTTGGCACCGTCAGTTCA 1936
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1868 TGTCTCTAAGGAAGAACCATTTCTCTGGTAGTTTTCCAAAATGCTGGCACCGTCAGTTCA 1927
Query 1937 TGCTTTGGGGAATTGACGTGTCTGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTTG 1996
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1928 TGCTTTGGGGAATTGACGTGTCAGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTCG 1987
Query 1997 GTATGTTACCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATTCGTTGGAAGGTAAAATCC 2056
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1988 GTATGTTACCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATGCGTTGGAAGGTAAAATCC 2047
Query 2057 CAGAGAGTCTTCGGAATTGTTCTGGCCTTACGAACATAGATCTCGGAGGAAACAAGCTGA 2116
|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2048 CAGAGAGTCTTCAGAATTGCTCTGGCCTTACGAACATTGATCTCGGAGGAAACAAGCTGA 2107
Query 2117 CCGGGAAGCTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTATTCATGCTTCGTCTGCAAA 2176
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2108 CTGGGAAGCTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTGTTCATGCTTCGTCTGCAAA 2167
Query 2177 GTAACTCCTTCACTGGT-CAAATCCCAGATGATCTCTGCAACGTTCCAAATCTACGCATT 2235
||||||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 2168 GTAACTCCTTCACTGGTGCAA-TCCCAGATGATCTCTGCAGCGTTCCGAATCTACGCATT 2226
Query 2236 CTGGACCTCTCCGGAAACAAAATCTCGGGCCCTATTCCAAAATGCATCAGCAATCTCACA 2295
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2227 CTGGACCTCTCCGGAAACAAAATCTCGGGCCCGATTCCAAAATGCATCAGCAATCTCACA 2286
Query 2296 GCCATTGCTCGAGGTACAAACAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACCAGA 2355
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2287 GCCATTGCTCGAGGTACAAGCAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACAAGA 2346
Query 2356 GCTCGTGAATACGAAGCCATAGCCAATAGCATAAATCTTT-CAGGGAACAACATAAGCGG 2414
||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||
Sbjct 2347 GCTCGTGAATACGAAAACATAGCCAATAGCATAAA-CTTTTCGGGGAACAACATAAGCGG 2405
Query 2415 AGAGATCCCAAGAGAAATCTTAGGCCTCTTGTATCTCCGAATCCTGAATTTATCAAGAAA 2474
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 2406 AGAGATCCCAAGAGAAATCTTGGGCCTCTTGTATCTTCGAATCCTGAATTTATCCAGAAA 2465
Query 2475 CTCCATGGCAGGAAGCATTCCCGAGAAAATATCAGAACTGAG-TCGCTTGGAGACGCTTG 2533
|||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 2466 CTCCATAGCAGGAAGCATTCCCGAGAGAATATCAGAACTG-GCTCGCTTGGAGACGCTTG 2524
Query 2534 ATCTATCAAAAAACAAGTTTTCTGGAGCCATACCTCAGAGCTTCGCAGCAATATCTTCTC 2593
|| |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 2525 ATTTATCAAGAAACAAGTTTTCTGGACCCATTCCTCAGAGCTTGGCAGCAATATCTTCTC 2584
Query 2594 TGCAAAGGCTGAATCTTTCGTTCAATAAACTGGAGGGGAGCATACCTAAGCTTCTCAAGT 2653
|||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 2585 TGCAAAGGCTTAATCTTTCATACAATAAACTGGAGGGGAGCATACCTAAGCTTCTCAAAT 2644
Query 2654 TTCAAGATCCATCCATTTACATTGGAAATGAATTACTCTGTGGGAAACCACTTCCTAAAA 2713
|||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 2645 TTCAAGATCCATCCATATACGTTGGAAATGAGTTACTCTGTGGGAACCCACTTCCTAAAA 2704
Query 2714 AATGTCCAAAAGACATTAAATAGCAAAATGTTGTAGTGAATTGAGCATAAGGAAGGTGCT 2773
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2705 AATGTCCAAAAGACATTAA-TAGCAAAATGTTGTAGTGAATTGAGCATAAGGAAGGTGCT 2763
Query 2774 AAGAAGTACCTTACAAGATAATGTACCTGCTCATATACCAATAATAATAAAATTATCAGC 2833
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2764 AAGAAGTACCTTACAAGATAATGTACCTGCTCATATACCAAAAATAATAGAATTATCAGC 2823
Query 2834 T 2834
|
Sbjct 2824 T 2824
> Ahg899503 jgi|Araly1|899503|Al_scaffold_0004_153
Length=933
Score = 699 bits (378), Expect = 0.0
Identities = 475/521 (91%), Gaps = 9/521 (2%)
Strand=Plus/Plus
Query 1945 GGAATTGACGTGTCTGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTTGGTATGTTA 2004
||||||||| ||| |||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 418 GGAATTGACATGTTTGAGAATAACTTATTAGACGCAATACCAGAGTCTCTCGGTATGTTA 477
Query 2005 CCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATTCGTTGGAAGGTAAAATCCCAGAGAGT 2064
||||||||||| ||||||||||||||||||||| |||| |||||| |||||| |||||||
Sbjct 478 CCTTCTCTCAGTGTCTTGCTTCTGAACCAAAATGCGTTCGAAGGTGAAATCCAAGAGAGT 537
Query 2065 CTTCGGAATTGTTCTGGCCTTACGAACATAGATCTCGGAGGAAACAAGCTGACCGGGAAG 2124
|||| |||||| ||| ||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 538 CTTCAGAATTGCTCTAGCCTTACGAACATTGATTTTGGAGGAAACAAGCTGACTGGGAAG 597
Query 2125 CTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTATTCATGCTTCGTCTGCAAAGTAACTCC 2184
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 598 CTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTGTTCATGCTTCCTCTGCAAAGTAACTCC 657
Query 2185 TTCACTGGT-CAAATCCCAGATGATCTCTGCAACGTTCCAAATCTACGCATTCTGGACCT 2243
||||||||| ||| |||||||||||||||||| | |||| |||||||||||| |||||||
Sbjct 658 TTCACTGGTGCAA-TCCCAGATGATCTCTGCAGCATTCCGAATCTACGCATTATGGACCT 716
Query 2244 CTC-CGGAAACAAAATCTCGGGCCCT-ATTCCAAAATGCATCAGCAATCTCACAGCCATT 2301
||| || ||||||||||||||||| | |||||||||||||||| ||||||||||||| ||
Sbjct 717 CTCTCG-AAACAAAATCTCGGGCC-TGATTCCAAAATGCATCAACAATCTCACAGCCCTT 774
Query 2302 GCTCGAGGTACAAACAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACCAGAGCTCGT 2361
||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 775 GCTCGAGGTACAAGCAATGAGGTGTTCCAGAATCTCGTATTCATTGTGACAAGAGCTCGT 834
Query 2362 GAATACGAAGCCATAGCCAATAGCATAAATCTTT-CAGGGAACAACATAAGCGGAGAGAT 2420
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 835 GAATACGAAGGCATAGCCAATAGCATAAA-CTTTTCAGGGAACAACATAAGCGGAGAGAT 893
Query 2421 CCCAAGAGAAATCTTAGGCCTCTTGTATCTCCGAATCCTGA 2461
|||||||||| |||| |||| || |||||| ||||| |||
Sbjct 894 CCCAAGAGAAGTCTTGGGCCACTCATATCTC-GAATCTTGA 933
Score = 608 bits (329), Expect = 6e-173
Identities = 391/421 (93%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 1486 ATGTGGCTCCAAGTACAAACCAAGCTCAACTTTGTCACACTCAGAAACACTGGTATTGAA 1545
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGTGGCTTCAAGTGCAAACCAAGCTCAACTTTGTTACACTCAGAAACACTGGAATTGAA 60
Query 1546 GATACAATACCGGATAGCTGGTTCTCTGGAATCTCTTCTAAAGTTACTTACCTAATTCT- 1604
||||||||||| ||| |||||||| |||||| |||| |||| |||||||| |||||
Sbjct 61 GATACAATACCCGATGGCTGGTTCGAAGGAATCGGTTCTGAAGTAACTTACCTGATTCTC 120
Query 1605 AGCAAACAACAGAATCAAAGGTAGATTACCTCAAAAGCTTGCGTTCCCAAAGTTAAACAC 1664
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 A-CAAACAACAGAATCAAAGGTAGATTACCTCAAAAGCTTGCGTTCCCAAAGTTAAACAC 179
Query 1665 CATTGATTTGAGCTCCAACAACTTTGAAGGCACTTTTCCTCTCTGGTCTACAAACGCAAC 1724
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 180 CATTGATTTGAGCTCCAACAACTTTGAAGGCCCTTTTCCTCTCTGGTCAACAAACGCAAC 239
Query 1725 AGAGCTGCGTCTTTACGAGAACAACTTCTCGGGTTCTCTTCCACAAAACATTGACGTCTT 1784
||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||
Sbjct 240 AGAGCTGCGTCTTTATGAGAACAACTTCTCGGGTTCTCTTCCACTTAATATTGATGTCTT 299
Query 1785 GATGCCAAGAATGGAGAAGATCTACCTCTTT-AGCAACAGCTTCACAGGCAACATCCCAT 1843
||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 300 GATGCCAAGAATGCAGAAGATCTACCTCTTCCA-CAACAGCTTCACAGGCAACATCCCAT 358
Query 1844 CGTCTCTATGTGAAGTCTCCGGACTGCAAATTCTGTCACTGAGGAAGAACCATTTCTCTG 1903
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 359 CGTCTCTATGTGAAGTCTCCGGATTGCAAATTCTGTCTCTAAGGAAGAACCATTTCTCTG 418
Query 1904 G 1904
|
Sbjct 419 G 419
> Ahg899504 jgi|Araly1|899504|Al_scaffold_0004_154
Length=204
Score = 303 bits (164), Expect = 3e-81
Identities = 191/204 (94%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 2510 AACTGAGTCGCTTGGAGACGCTTGATCTATCAAAAAAC-AAGTTTTCTGGAGCCATACCT 2568
||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 1 AACTGGGTCGCTTGGAGACGCTTGATCTATCAAGAAACAAAGTTTTCTGGAGCCATTCCT 60
Query 2569 CAGAGCTTCGCAGCAATATCTTCTCTGCAAAGGCTGAATCTTTCGTTCAATAAACTGGAG 2628
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CAGAGCTTGGCAGCAATATCTTCTCTACAAAGGCTGAATCTTTCGTTCAATAAACTGGAT 120
Query 2629 GGGAGCATACCTAAGCTTCTCAAGTTTCAAGATCCATCCATTTACATTGGAAATGAATTA 2688
| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||
Sbjct 121 GAGAGCATACCTAAGCTTCTCAAATTTCAAGATCCAACCATTTACGTTGGAAATGAGTTA 180
Query 2689 CTCTGTGGGAAACCA-CTTCCTAA 2711
||||||||||||||| ||||||||
Sbjct 181 CTCTGTGGGAAACCATCTTCCTAA 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107147859185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5