BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34940.1
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267 2752 0.0
Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513 1352 0.0
Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1 566 3e-160
> Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267
Length=1860
Score = 2752 bits (1490), Expect = 0.0
Identities = 1741/1862 (94%), Gaps = 17/1862 (1%)
Strand=Plus/Plus
Query 30 ATGTCTCCGAGCAATAAAGGAACCGTCTTGGCTCTGATTCTAGCGTTGACCATGGTGGTG 89
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTACGAGCAATAAAGGAACCGTCTTGGCTCTGATACTAGCGTTGACCATGGTGGTG 60
Query 90 GTCAACGGGT-TTTCATCGAGATTCTTCGTGGAGAAAAGCAGCTTGACGGTCCTTAACTC 148
|||||| ||| ||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 61 GTCAAC-GGTGTTTCACCGAGATTCTTCGTGGAGAAGAGTAGCTTGACGGTACTTAACTC 119
Query 149 ATGGGAAATGGGAGCTAAGCACGACGCGGCCATAGCAAACTTTGGTC-TCCCAAAGTACG 207
||| |||||||||||||||||||||||||||| ||||||||||| | | ||||| | ||
Sbjct 120 TTGGAAAATGGGAGCTAAGCACGACGCGGCCATCGCAAACTTTGG-CATTCCAAACTTCG 178
Query 208 GCGGTTTCATGATCGGCTCTGTGGTCTACGCAGGCCAAGACGCTTACGGATGCAACTCTT 267
| |||||||||||||||||||| |||||||||||||||| || ||| |||||| ||||||
Sbjct 179 GTGGTTTCATGATCGGCTCTGTCGTCTACGCAGGCCAAGGCGATTATGGATGCGACTCTT 238
Query 268 TCAACAAAACCTTCAATACCAAGTCTCCTTATCCCAAAATTCTCCTCATTGATCGTGGAG 327
||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||
Sbjct 239 TCAACAAAACCTTCACTCCCAAGTCTCCTTATCCCACCATCCTCCTCATTGATCGTGGAG 298
Query 328 TGTGTAACTTTGCTTTGAAGATATGGAACGGACAACAATCCGGCGCAGCGGCTGTTCTTT 387
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 299 TGTGTAACTTTGCTTTGAAGATATGGAATGGGCAACAATCCGGAGCAGCGGCTGTTCTTT 358
Query 388 TAGCAGATAACATTGTTGAGCCATTGATAACAATGGA-T-A-C------ACCCCAAGATG 438
|||||||||||||||||||||||||| |||||||||| | | | | ||||||||
Sbjct 359 TAGCAGATAACATTGTTGAGCCATTGTTAACAATGGATTCACCAGAGGAATCCCAAGATA 418
Query 439 AAGATCCTGACTTTATAGACAAAGTCAAGATCCCATCAGCTTTAATCCTTCGCTCTTTCG 498
||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 419 AAGATCCTGACTTTATAGACAAAATCAAGATCCCATCGGCTTTGATCCTTCGCTCTTTCG 478
Query 499 GTGATAGCCTCAAGAAAGCTCTTAAAAGAGGTGAGGAGGTAATCTTGAAGATGGATTGGA 558
|||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 479 GTGATAGCCTCAAGAATGCTCTTAAAAGAGGCGAGGAAGTAATCTTGAAGATTGATTGGA 538
Query 559 GTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAATACTAATG 618
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 539 GTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAACACTAACG 598
Query 619 ATGAATGTGGTGTACACTGCGATAAACAGA-TAGATTTCATTAAGAACTTTAAGGGAATG 677
|| |||||||||| |||||| |||| || | |||||||||| |||||||||||||||| |
Sbjct 599 ATAAATGTGGTGTGCACTGCCATAAGCA-ATTAGATTTCATAAAGAACTTTAAGGGAACG 657
Query 678 GCTCAGATTCTTGAAAAAGGCGGTTATACTTTGTTCAGACCTCACTACATTTCTTGGGTT 737
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| ||
Sbjct 658 GCTCAGATTCTTGAAAAAGGTGGTTATACTTTGTTCAGACCTCATTACATTGCTTGGTTT 717
Query 738 TGTCCCAAAGAGCTTCTACTTAGCAAGCAGTGTAGGACTCAGTGTATAAACCAAGGGAGG 797
|||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 718 TGTCCCAAAGAGCTGCTGCTTAGCAAGCAGTGTAAGACTCAGTGTCTAAACCAAGGGAGG 777
Query 798 TATTGTGCTCTTGATACTAAGCAAGAATTTGAAGATGGATATAATGGGAAAGACGTCGTT 857
|||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 TATTGTGCTCCTGACCCTAAGCAAGACTTTGAAGATGGATATAATGGGAAAGACGTCGTT 837
Query 858 TATGAGAATCTGAGGCAGTTATGTGTTCATAAAGTAGCTAAGGAGAAGAACACTTCTTGG 917
|| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 TACGAGAATCTGAGACAGTTATGTGTTCATAGAGTAGCTAAGGAGAAGAACACTTCTTGG 897
Query 918 GTTTGGTGGGACTATGTGACAGATTTTAACATCAGGTGTTCTATGAAGGAGAAGAAATAC 977
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTTGGTGGGATTATGTGACAGATTTTAACATCAGGTGTTCTATGAAGGAGAAGAAATAC 957
Query 978 AGCAGAGAATGTGCAGAGACTATTGTGGAATCTCTCGGGCTGTCTCTTGAGAAGATCAAG 1037
||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 958 AGCAGAGAATGCGCAGAGACTGTCGTGGAATCTCTCGGGTTGTCTCTTGAGAAGATCAAG 1017
Query 1038 AAATGCATTGGTGATCCTGATGCTGATGTAGAGAATGAAGTTCTAAAAGCCGAGGAAGCT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1018 AAATGCATTGGTGATCCTGATGCTGATGTAGAGAATGAAGTTCTAAAAGCCGAACAAGCT 1077
Query 1098 TTTCAGTTAGGCCAAGAGAATCGTGGCATTGTTACAATCTTTCCTACATTAATGATCAAC 1157
||||||||||||||||||||||| || |||||||||||||||| ||||| |||||||||
Sbjct 1078 TTTCAGTTAGGCCAAGAGAATCGCGGGGTTGTTACAATCTTTCCAACATTGATGATCAAC 1137
Query 1158 AATGCTCAATATCGCGGTAAACTGGAGAGAACCGCGGTGCTGAAGGCTATATGTTCAGGA 1217
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 AATGCTCAATATCGCGGTAAACTGGAGAGAACTGCGGTGCTGAAGGCTATATGTTCAGGA 1197
Query 1218 TTCAAGGAAAGAACAGAACCGTCAATATGTTTGAATTCAGATATAGAGACCAATGAATGT 1277
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 TTCAAGGAAAGAACCGAACCTTCAATATGTTTGAATGCAGATATAGAGACCAATGAATGT 1257
Query 1278 CTTATAGAAAATGGAGGATGTTGGCAAGACAAAAGATCCAATGTAACTGCTTGCAAGGAC 1337
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1258 CTTATAGAAAATGGAGGATGTTGGCAAGACAAAAGATCTAATGTAACGGCTTGCAAGGAC 1317
Query 1338 ACATTTAGGGGAAGAGTATGTGAGTGCCCGGTTGTCGATGGTGTTCAATATAAAGGAGAT 1397
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 1318 ACATTTAGGGGAAGAGTATGTGAGTGCCCGGTTTTTAATGGGGTTCAATATAAAGGAGAT 1377
Query 1398 GGTTATACCTCCTGCAAACCTTATGGACCTGCGAGATGTTCAAT-GAACAATGGAGACTG 1456
|||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||
Sbjct 1378 GGTTATACCTCCTGCAAACCTTATGGACCTGCTAGATGTTCA-TCGAACAATGGAGGCTG 1436
Query 1457 CTGGTCTGAAACCAGAAAGGGTCTAACTTTCTCTTCTTGTTCAGACTCAGAGACATCAGG 1516
||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1437 CTGGTCTGAAACCAGAACGGGTCTAACTTTCTCTGCTTGTTCAAACTCAGAGACATCAGG 1496
Query 1517 ATGTCGTTGCCCTCTAGGTTTCCTTGGAGATGGTCTAAAATGTGAAGACATTGATGAATG 1576
||||||||| |||||||| |||| |||||||||||| |||||||||||||| ||||||||
Sbjct 1497 ATGTCGTTGTCCTCTAGGCTTCCGTGGAGATGGTCTGAAATGTGAAGACATCGATGAATG 1556
Query 1577 CAAAGAGAAATCAGCTTGTAAATGTGATGGCTGCAAATGCAAGAACAATTGGGGAGGATA 1636
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1557 CAAAGAGAAATCAGCTTGTCAATGTGATGACTGCAAATGCAAGAACAATTGGGGAGGATA 1616
Query 1637 TGAATGCAAATGTTCTAACAATAGTATCTACATGAAAGAAGAGGACACTTGTATCGAGAG 1696
||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct 1617 TGAATGCAAATGTTCTAACAATAGTGTCTATATGAAAGAAGAAGACACTTGTATTGAGAG 1676
Query 1697 AAGAAGTGGATCAAGAAGCAGAGGGTTGTTCACAATTGTGGTTCTAACCGCCATCGCGGG 1756
|||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 1677 AAGAAGTGGATCAAGAAGCAGATGGTTGTTCACAATTGTGGTTCTAATCGCCATTGCGGG 1736
Query 1757 TATCTCTTTAGGTGCTTATATATTCTACAAGTACCATCTTCAGTCATACATGGATTCAGA 1816
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1737 TATCTCTTTAGGTGCTTATATATTCTACAAGTACCATCTTCAGTCTTACATGGATTCAGA 1796
Query 1817 GATCGTGTCCATTATGTCTCAGTACATACCACTCGATAGCCAAAGCATTAACCAAGACTC 1876
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GATAGTGTGTATTATGTCTCAGTACATACCACTCGATAGCCAAAGCATTAACCAAGACTC 1856
Query 1877 TT 1878
||
Sbjct 1857 TT 1858
> Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513
Length=1896
Score = 1352 bits (732), Expect = 0.0
Identities = 1496/1858 (81%), Gaps = 80/1858 (4%)
Strand=Plus/Plus
Query 43 ATAAAGGAACCGTCTTGGCTCTGATTCTAGCGTTGACCATGGTGGTGGTCAACGG-GTTT 101
|||||||| || ||||||||||| |||||||||||| | | ||||||||||||| ||||
Sbjct 14 ATAAAGGAGCCATCTTGGCTCTGTTTCTAGCGTTGA-C-T-ATGGTGGTCAACGGAGTTT 70
Query 102 TCATCGAGATTCTTCGTGGAGAAAAGCAGCTTGACGGTCCTTAACTCATGGGAAATG-GG 160
|| ||||||| |||||||||| || ||| | ||| | || ||| | | || |||| ||
Sbjct 71 TC-GGGAGATTCATCGTGGAGAAGAGTAGCGTCACGATTCTAAACCCTTTGGCAATGCGG 129
Query 161 AGCTAAGCACGACGCGGCCATAGCAAACTTTGGTCTCCCAAAGTACGGCGGTTTCATGAT 220
|||| ||||| || ||||| || ||||| ||| | || || ||||| |||| ||||||
Sbjct 130 -TCTAAACACGATGCAGCCATTGCTAACTTCGGTGTTCCTAATTACGGTGGTTACATGAT 188
Query 221 CGGCTCTGTGGTCTACGCAGGCCAA-GACGCTTACGGATGCAACTCTTTCAACAAAACCT 279
||| || || || ||||| || ||| || ||||| ||||| ||||||| | ||||| |
Sbjct 189 CGGTTCCGTTGTTTACGCTGGTCAAGGA-GCTTATGGATGTGACTCTTTTGATAAAACTT 247
Query 280 TCAATA-CC-AAGTCTCCTTATCCCAAAATTCTCCTCATTGATCGTGGAGTGTG-TAACT 336
|||| | || || || ||| ||| | ||| | |||| |||||||||| ||| | |||
Sbjct 248 TCAA-ACCCAAATTC-CCTCGTCCTACCATTTTAATCATCGATCGTGGAGAGTGCT-ACT 304
Query 337 TTGCTTTGAAGATATGGAACGGACAACAATCCGGCGCAGCGGCTGTTCTT-TTAGCAGAT 395
|||| || ||| |||||||||| ||||||||||| ||||| || ||| || |||| |||
Sbjct 305 TTGCATTAAAGGTATGGAACGGTCAACAATCCGGTGCAGCAGCAGTT-TTAGTAGCTGAT 363
Query 396 AACATTGTTGAGCCATTGATAACAATGGATACACCCCAAG-AT-----GAAGATCCTGAC 449
||| ||| ||||||||||||||| |||||| |||| | | || |||| | ||||
Sbjct 364 AACGTTGATGAGCCATTGATAACTATGGATTCACCTGAGGAATCCAAAGAAGCTGATGAC 423
Query 450 TTTATAGACAAAGTCAAGATCCCATCAGCTTTAATC--CTTCGCTCTTTCGGTGATAGC- 506
|||||||| ||| |||| || || || ||||||||| ||| ||||||| ||| |
Sbjct 424 TTTATAGAGAAACTCAACATTCCTTCGGCTTTAATCGACTT--TTCTTTCGCCAATA-CA 480
Query 507 CTCAAGAAAGCTCTTAAAAGAGGTGAGGAGGTAATCTTGAAGATGGATTGGAGTGAGTCT 566
|||||| |||||||||||| ||| ||||| ||| || ||||||| || |||||||||||
Sbjct 481 CTCAAGCAAGCTCTTAAAAAAGGCGAGGAAGTAGTCCTGAAGATAGACTGGAGTGAGTC- 539
Query 567 A-TACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAATACTAATGATGAATG 625
| |||| | || ||||||||||||||||||||| ||||| |||| || |||||||| ||
Sbjct 540 ATTACCTCATCCGGATGAGAGAGTTGAGTATGAGTTATGGACTAACACGAATGATGAGTG 599
Query 626 TGGTGTACACTGCGATAAACAGATAG-ATTTCATTAAGAACTT-TAAGGGAATGGCTCAG 683
||||| | |||||| | ||||| | |||| | |||||||| ||||| || || |||
Sbjct 600 TGGTGCGCGGTGCGATGAGCAGAT-GAATTTTGTCAAGAACTTCAAAGGGCAT-GCGCAG 657
Query 684 ATTCTTGAAAAAGGCGGTTA-TACTTTGTTCAGACCTCACTACATTTCTTGGGTTTGTCC 742
|||||||||||||| || || | ||||||||| |||||| |||||| | ||| |||||||
Sbjct 658 ATTCTTGAAAAAGGAGGATACT-CTTTGTTCACACCTCATTACATTACATGGTTTTGTCC 716
Query 743 CAAAGAGCTTCT-ACT-TAGCAAGCAGTGTAGGACTCAGTGTATAAACCAAGGGAGGTAT 800
||||| || | | |||||| || |||| | |||||||||| |||||||||||||||
Sbjct 717 TAAAGA--TTATGTTTCTAGCAATCAATGTAAGTCTCAGTGTATCAACCAAGGGAGGTAT 774
Query 801 TGTGCTCTTGATACT-AAGCAAGAATTTGAAGATGGATATAATGGGAAAGACGTCGTTTA 859
||||||| ||| || || ||||| |||| ||||||||| |||| |||||| ||||||
Sbjct 775 TGTGCTCCTGACCCTGAA-CAAGACTTTGGAGATGGATACGATGGCAAAGACATCGTTT- 832
Query 860 T-GAGAATCTGAGGCAGTTATGTGTTCATAAAGTAGCTAAGGAGAAGAACAC-TTCTTGG 917
| ||||||||||| |||||||||||||||| |||||| || ||||| ||| | ||||||
Sbjct 833 TCGAGAATCTGAGACAGTTATGTGTTCATAGAGTAGCAAAAGAGAATAAC-CGGTCTTGG 891
Query 918 GTTTGGTGGGACTATGTGACAGATTTTAACATCAGGTGTTCTATGAAGGAGAAGAAATAC 977
|||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||
Sbjct 892 GTTTGGTGGGACTATGTGACTGATTTTCACATCAGGTGTTCAATGAAGGAGAAGAAGTAT 951
Query 978 AGCAGAGAATGTGCAGAGACTA-TTGTGGAATCTCTCGGGCTGTCTCTTGAGAAGATCAA 1036
|||| ||||||||| |||| | |||| ||||||||||| || | ||||| ||||||||
Sbjct 952 AGCAAAGAATGTGCTGAGA-AAGTTGTTGAATCTCTCGGTTTGCCACTTGACAAGATCAA 1010
Query 1037 GAAATGCATTGGTGATCCTGATGCTGATGTAGAGAATGAAGTTCTAAAAGCCGAGGAAGC 1096
||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||| ||||
Sbjct 1011 GAAATGCATTGGTGATCCTGAAGCTGATGTGGAGAATGAAGTTTTGAAAGCTGAGCAAGC 1070
Query 1097 TTTTCAGTTAGGCCAAGA-GAAT-CGTGGCATTGTTACAATCTTTCCTACATTAAT-GAT 1153
||||| |||| |||| || || || || || |||||||| || ||||| || | |
Sbjct 1071 GCTTCAGGTAGGACAAGGTGACCGCGGGG-AT-GTCACAATCTTGCCAACATTGATCG-T 1127
Query 1154 CAACAATGCTCAATATCGCGGTAAACTGGAGAGAACCGCGGTGCTGAAGGCTATATGTTC 1213
||||||||||||||| ||||||||||| ||||||| || || || ||||||||||||||
Sbjct 1128 CAACAATGCTCAATACCGCGGTAAACTCGAGAGAAATGCAGTACTTAAGGCTATATGTTC 1187
Query 1214 AGGATTCAAGGAAAGAACAGAACCGTCAATATGTTTGAATTC-AGATATAGAGACCAATG 1272
|||||| ||||||||||| |||||| ||| ||| | || | |||||| || || || |
Sbjct 1188 AGGATTTAAGGAAAGAACTGAACCGGGAATCTGTCT-AAGTGGAGATATCGAAACAAACG 1246
Query 1273 AATGTCTT-ATAGAAAATGGAGGATGTTGGCAAGACAA-AAGATCCAATGTAACTGCTTG 1330
||||||| | || ||||||||| |||||||| |||| ||| || |||||||| |||||
Sbjct 1247 AATGTCTCGA-AGCAAATGGAGGGTGTTGGCAGGACATGAAG-TCTAATGTAACAGCTTG 1304
Query 1331 CAAGGACACATTTAGGGGAAGAGTATGTGAGTGCCCGGTTGTCGATGGTGTTCAATATAA 1390
|||||||||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||
Sbjct 1305 CAAGGACACATTTAGGGGAAGAGTCTGTGAATGCCCTGTTGTAAATGGTGTGCAGTATAA 1364
Query 1391 AGGAGATGGTTATACCTCCTGCAAACCTTATGGACCTGCGAGATGTTCAATGAA-CAATG 1449
||||||||| |||||||| || |||||||||| ||||| ||||| || || || ||| |
Sbjct 1365 AGGAGATGGCTATACCTCATGTGAACCTTATGGCCCTGCCAGATGCTCGATTAATCAA-G 1423
Query 1450 GAGACTGCTGGTCTGAAACCAGAAAGGGTCT-AACTTTCTCTTCTTGTTCAGA-CTCAGA 1507
||| |||||||||||||||| |||||| || ||||||||| |||| || || || ||
Sbjct 1424 GAGGTTGCTGGTCTGAAACCAAAAAGGG-CTTAACTTTCTCCGCTTGCTC-GAACTTGGA 1481
Query 1508 GACATCAGGATGTCGTTGCCCTCTAGG-TTTCCTTGGAGATGGTCTAAAATGTGAAGACA 1566
|||||| |||||||| ||||||| ||| ||| ||||||||||| |||||||||||||
Sbjct 1482 GACATCGGGATGTCGCTGCCCTCCAGGGTTTAAA-GGAGATGGTCTTAAATGTGAAGACA 1540
Query 1567 TTGATGAATGCAAAGAGA-AATCAGCTTGTAAATGTGATGGCTGCAAATGCAAGAACAAT 1625
|||||||||| || || | ||||||||||| |||||||||| ||||| || ||||||||
Sbjct 1541 TTGATGAATGTAAGGA-ACAATCAGCTTGTCAATGTGATGGATGCAACTGTAAGAACAAC 1599
Query 1626 TGGGGAGGATATGAATGCAAATGTTCTA-ACAATAGTATCTACATGAAAGAAGAGGACAC 1684
|||||||| | |||||||||||| ||| | ||| || |||||||||||||| | |||||
Sbjct 1600 TGGGGAGGCTTTGAATGCAAATGCTCTGGA-AATCGTCTCTACATGAAAGAACAAGACAC 1658
Query 1685 TTGTATCGAGAGAAGAAGTGGATCAAGAAGCAGAGGGTTGTTCACAATTGTGGTTCTAAC 1744
|||||| |||||||| | | |||||||| | || |||| || || ||||| ||||| |
Sbjct 1659 TTGTATTGAGAGAAGC-G-G-ATCAAGAATCGGATGGTTCTTTACGTTTGTGATTCTAGC 1715
Query 1745 CGCCA-TCGCGGGTATCTCTTTAGGTGCTTATATATTCTACAAGTACCATCTTCAG-TCA 1802
|| | | || | || | | |||||| ||| ||||||||||||| | ||| ||| ||
Sbjct 1716 TGC-AGTTGCAAGCATATGTGTAGGTGGTTACGTATTCTACAAGTATCGTCT-CAGGTCT 1773
Query 1803 TACATGGATTCAGAGATCGTGTCCATTATGTCTCAGTACATACCACTCGATAGCCAAA 1860
|| ||||||||||| ||| || | ||||||||||||||||| ||| | || |||||||
Sbjct 1774 TATATGGATTCAGAAATCATGGCGATTATGTCTCAGTACATGCCATTGGAGAGCCAAA 1831
> Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1
Length=2273
Score = 566 bits (306), Expect = 3e-160
Identities = 1220/1648 (74%), Gaps = 115/1648 (7%)
Strand=Plus/Plus
Query 273 AAAACCTTCAATACCAAGTCTCCTTATCCCAAAATTCT-CCTCATTGATCGTGGA-GTGT 330
||||||||||| |||||| |||| ||||| ||||| | || ||||||||||| || |
Sbjct 463 AAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGTGGAGGT-T 520
Query 331 GTAACTTTG-CTTTGAAGATATGGAACGGACAACAATCCGGCGCAGCGGCTGTTCTTTTA 389
|| |||||| ||| ||| ||| ||| || ||| | ||||| ||||| |||||| |
Sbjct 521 GTTACTTTGCCTTAAAAG-CGTGGCACGCTCAGCAAGCAGGCGCCGCGGCAGTTCTTGTG 579
Query 390 GCAGATAACATTGTTGAGCCATTGATAACAATGGATACACCCCA--AGATG--AAGAT-C 444
|| ||||| | | |||||||||| ||||||||||| |||| | ||| | ||||| |
Sbjct 580 GCGGATAATGTAGATGAGCCATTGTTAACAATGGATTCACCAGAGGAGA-GCAAAGATGC 638
Query 445 --CTGACTTTATAGACAAAGTC-AA-GATCCCATCAGCTTTAATCCTTCGCTCTTTCGGT 500
|| || ||||| ||| | || |||||||| | ||||||| | || |||||
Sbjct 639 AGATGGGTTCATAGA-GAAG-CTAACAATCCCATCGGTTTTAATCGATAAATCGTTCGGA 696
Query 501 GATAGCCTCAAG-AAA-GCTCTT-AAAAGAGGTGAGGAGGTAATCTTGAAGA-TGGATTG 556
||| | || ||| ||| | | || | || |||| | | || ||||||| | | |||||
Sbjct 697 GAT-GACTTAAGAAAAGGGT-TTCAGAA-AGGTAAAAACATAGTCTTGAA-ACTAGATTG 752
Query 557 GAGTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAATA-CTA 615
||| || ||| | || | |||||| || |||| || |||||||| ||| |||||| | |
Sbjct 753 GAGAGAATCTGTGCCTCATCCTGATCAGCGAGTAGAATATGAGCTGTGGACTAATAGC-A 811
Query 616 ATGATGAATGTGGTGTACACTGCGATAAACAGATAGATTTCATTAAGAACTTTAAGGG-A 674
| || || ||||||| || |||||| ||||||| ||||| | ||||||||||||||
Sbjct 812 ACGACGAGTGTGGTGCACGGTGCGATGAACAGATGGATTTTGTCAAGAACTTTAAGGGTC 871
Query 675 ATGGCTCAGATTCTTGAAAAAGGCGGTTATACTTTGTTCA-GACCTCACTACATTTCTTG 733
|| |||||||| || ||||||||||||||||| ||| | | || || || || | ||
Sbjct 872 AT-GCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACG-CCACATTATATCACATG 929
Query 734 GGTTTGTCCC-AAAGAGCTTCTACTTAG-CAAGCAGTGTAGGACTCAGTGTATAAACCAA 791
| |||| ||| || || || || | | || |||| | ||||||||||||||||
Sbjct 930 GTTTTG-CCCTTTTCAGTTTATAAACAGTCCA-CATTGTAAGTCTCAGTGTATAAACCAT 987
Query 792 GGGAGGTATTGTGCTCTTGATACTAAGCAAGAATTTGA-AGATGGATAT-AATGGGAAAG 849
|||||||||||||||| ||| || || || ||||| | ||| || ||| || || ||||
Sbjct 988 GGGAGGTATTGTGCTCCTGACCCTGAG-AACAATTTCAGAGAAGGTTATGAA-GGCAAAG 1045
Query 850 ACGTCGT-TTATGAGAATCTGAGGCAG-TTATGTGTTCATAAAGTAGCTAAGGAGAAG-A 906
| || || | |||||||||||| ||| || ||||| |||| ||| || || ||| || |
Sbjct 1046 ATGTTGTGCT-TGAGAATCTGAGACAGCTT-TGTGTGCATAGAGTTGCGAATGAG-AGTA 1102
Query 907 ACAC-TTCTTGGGTTTGGTGGGACTATGTGACAGATTTTAACA-TCAG-G-TGTTCTATG 962
| | |||||||||||||||| ||||| || |||||| || || | | ||||| |||
Sbjct 1103 GC-CGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTT--CATTC-GCGATGTTCGATG 1158
Query 963 AAGGAGAAGAAATACAGCAGAGAATGTGCAGAGA-CTATTGTGGAATCTCTCGGGCTGT- 1020
||||||||||||| |||| ||||||||| |||| | || | ||||| | | | |
Sbjct 1159 AAGGAGAAGAAATTTAGCATAGAATGTGCTGAGAGC-ATCATCAAATCTAT--GAATTTA 1215
Query 1021 -CTCTTGAGAAGATCAAGAAATGCATTGGTGATCCTGATGCTGATG-TAGAGAATGAAGT 1078
|| |||||||||||||||||||||||||||||||||| |||||| | ||||| ||||
Sbjct 1216 CCTATTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACT-GAGAACCAAGT 1274
Query 1079 TCTAA-AAGCCGAGGAAGCTTTTC-AG-TTAGGCCAAGAG-AATCGTGGC-ATTGTTACA 1133
||| | || | ||| ||| | | | || || |||| || | || || || || |||||
Sbjct 1275 TCTGAGAATC-GAGCAAG-TATCCCAGATT-GGCCGAG-GTAACCGGGGAGAT-GTTACG 1329
Query 1134 ATCTTTCCTACATTAATGATCAACAATGCTCAATATCGCGGTAAACTGGAGAGAACCGCG 1193
|| || || |||||| | ||||| || || |||||||| || | | |||||||||||||
Sbjct 1330 ATATTGCCAACATTAGTCATCAATAACGCCCAATATCGAGGGAGATTGGAGAGAACCGCT 1389
Query 1194 GTGCTGAAGGCTATATGTTCAGGATTCAAGGAAAGAACAGAACCGTCA-ATATGTTTGAA 1252
|| || ||||| ||||| | |||||||| |||| | | ||||| || || || || ||
Sbjct 1390 GTTCTAAAGGCGATATGCGCTGGATTCAACGAAACATCGGAACC-TCCCATTTGCTTAAA 1448
Query 1253 TTCAGATATAGAGACCAATGAATGTCTT-ATAGAA-AATGGAGGATGTTGGCAAGACA-A 1309
||| | ||||||| ||||| || ||| | | || ||||| || || ||||| |||| |
Sbjct 1449 CACAGGTTTAGAGACAAATGAGTGCCTTGA-A-AACAATGGTGGTTGCTGGCAGGACACA 1506
Query 1310 AAGATCCAATGTAACTGCTTG-CAAGGACACATTTAGGGGAAGAGTATGTGAGTGCCCGG 1368
|| | | || |||| ||||| |||| ||||||| || ||| || | || ||||| ||||
Sbjct 1507 AA-AGCAAACATAACCGCTTGTCAAG-ACACATTCAGAGGACGACTCTGCGAGTGTCCGG 1564
Query 1369 TTGTCGATGGTGTTCAATATAAAGGAGATGGTTATACCTCCTGCAAACCTTATGGACCTG 1428
|||| | ||||||||||||||||| || || || || || || | ||||||||| ||||
Sbjct 1565 TTGTAAAAGGTGTTCAATATAAAGGCGACGGGTACACTTCATGTACACCTTATGGGCCTG 1624
Query 1429 CGAGATGTTCAATGAACAATGGAGACTGCTGGTCTGAAACCAGAAAGGGTCT-AACTTTC 1487
| || ||| | || |||||||||| ||||||||||| || ||||| || || |||||||
Sbjct 1625 CCAGGTGTACTATTAACAATGGAGGTTGCTGGTCTGACACAAGAAATGG-CTTAACTTTC 1683
Query 1488 TCTTCTTGTTCAGACTCAGAGAC-ATCAGGATGTCGT-TGCCCTCTAGGTTTCCTTGGAG 1545
||| |||| |||||||| | | | | | || || | || ||| |||||||| || |
Sbjct 1684 TCTGCTTGCTCAGACTCTGTGTCTA-CTGGCTG-CAAATGTCCTGAAGGTTTCCAAGGCG 1741
Query 1546 ATGGTCTAAAATGTGAAGACATTGATGAATGCAAAGAGAAATCAGCT-TGTAAATGT-GA 1603
| ||| | | |||||||| ||| | ||||| |||||| || | | ||| ||||| |
Sbjct 1742 ACGGTTTCACGTGTGAAGATATTAACGAATGTAAAGAGCGTTCGG-TGTGTCAATGTAGC 1800
Query 1604 TGGCTGCAAATGCAAGAACA-ATTGGGGAGGATATGAATGCAAATGTTCTAACAATA-G- 1660
|| |||| |||||||||| || |||| ||||| |||||| |||||| | | | |
Sbjct 1801 -GGTTGCAGATGCAAGAACTCAT-GGGGTGGATACAAATGCAGTTGTTCTGGCGACAAGC 1858
Query 1661 TATCTACATGAAA-GAAGAGGACACTTGTATCGAGAGAAGAAGTGGATC-AAGAAGCAG- 1717
| | ||||| ||| || | || |||||||| |||||| | |||||| || || |||
Sbjct 1859 T-T-TACAT-AAACGATCAAGATACTTGTATAGAGAGAT-A--TGGATCCAA-AA-CAGC 1910
Query 1718 AGGGTTGTTCACAAT-TGTGGTTCTAACCGCCATCGCGGGTATCTC--TTTAGGTGCTTA 1774
| ||| | ||||| | | || | ||| | | |||| | || | | ||||| || |||
Sbjct 1911 ATGGTGGCTCACACTCT-TGATCCTAGCTATCGTCGCAG-TAGC-CGGTTTAGCTGGTTA 1967
Query 1775 TATATTCTACAAGTACCATCTTCAG-TCATACATGGATTCAGAGATCGTGTCCATTATGT 1833
| |||||||||| |||| ||||| || |||||||| || ||||| || |||| ||||
Sbjct 1968 TCTATTCTACAAATACCGG-TTCAGGTCTTACATGGACTCGGAGATTATGACCATCATGT 2026
Query 1834 CTCAGTACATACCACTCGATAGCCAAAG 1861
| ||||| || ||||| || ||||||||
Sbjct 2027 CACAGTATATGCCACTTGAGAGCCAAAG 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74771150935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5