BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34960.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482460 jgi|Araly1|482460|fgenesh2_kg.4__1520__AT2G34960.1 2933 0.0
> Ahg482460 jgi|Araly1|482460|fgenesh2_kg.4__1520__AT2G34960.1
Length=1841
Score = 2933 bits (1588), Expect = 0.0
Identities = 1760/1843 (95%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 71 agagagaatgga-aggtgaagagagaggatactggagatggagcaagagagaTTTCTTTC 129
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AGAGAGAATGGATA-ATGAAGAGAGAGGATACTGGAGATGGAGCAAGAGTGATTTCTTTC 59
Query 130 CTGAGGAATCTTTCCAGAGCTTTGGTAGTTACAGAGCTGCTCTGTCTCAGACATGTTCCA 189
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 60 CTGAGGAATCTTTCCAGAGCTTCGGAAGTTACAGAGCTGCTCTGTCTCGGACATGTTCCA 119
Query 190 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGAGAACGAGCGGTTTGAGCTCAAGA 249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGACAACGAGCGGTTTGAGCTCAAGA 179
Query 250 AACAGAGTGAGCACGAGATGAAACGGTGTTTGACATGGTGGGATTTAGTATGGTTTGGAT 309
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 180 AACAGAGCGAGCACGAGATGAAACGGTGTTTGACGTGGTGGGATTTAGTCTGGTTTGGAT 239
Query 310 TCGGGTCGGTGATTGGAGCTGGAATCTTTGTCTTGACAGGTCAAGAAGCTCATGAGCAAG 369
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TCGGCTCGGTGATTGGAGCTGGAATCTTTGTCCTGACAGGTCAAGAAGCTCATGAGCAAG 299
Query 370 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 359
Query 430 TCTGCTACACGGAATTCGCTGTGGAAATCCCTGTGGCTGGTGGTTCTTTCGCCTATCTAC 489
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 360 TCTGCTACACGGAATTCGCTGTGGAAATCCCCGTGGCTGGTGGTTCCTTCGCCTATTTAC 419
Query 490 GGATTGAGCTTGGGGATTTTGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 549
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGATTGAGCTTGGGGATTTCGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 479
Query 550 TTGTTGGAACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 609
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTTGGGACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 539
Query 610 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCCGGTTTTAATCTCTTGGACC 669
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 540 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCTGGTTTTAATCTCTTGGATC 599
Query 670 CAATAGCTGTTGTTGTTATAGCCGCTTCAGCTACAATTGCATCGATCAGCACAAGAAAGA 729
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 CAATAGCTGTTGTGGTTATAGCCGCTTCAGCTACAATCGCATCGATCAGCACCCGAAAGA 659
Query 730 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTTATAA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTGATAA 719
Query 790 TCGCTGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTTTGGACCTG 849
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TTGCGGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTATGGACCTG 779
Query 850 AGGGAGTGTTCCGAGCAGCTGCAGTTGTGTACTTTGCATATGGAGGATTTGATAGCATAG 909
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AGGGAGTGTTCCGAGCAGCTGCAGTAGTGTACTTTGCATATGGAGGATTTGATAGCATAG 839
Query 910 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 899
Query 970 CAATGTCGATAATAACAGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 1029
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAATGTCGATAATAACGGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 959
Query 1030 AGTATACAGATATAGATCCAAATGCAGCTTACTCAGTAGCGTTTCAGAGCGTTGGAATGA 1089
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 960 AGTATACAGATATAGATCCAAACGCAGCTTACTCGGTAGCGTTTCAGAGTGTTGGAATGA 1019
Query 1090 AATGGGGAAAGTACTTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1149
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AATGGGGAAAGTACCTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1079
Query 1150 TAGGAGCATTGGGACAAGCGAGATACGTTACTCACATCGCACGGACCCACATGATTCCGC 1209
|||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 1080 TAGGAGCACTGGGACAAGCGCGATACGTCACTCACATTGCACGGACCCACATGATTCCGC 1139
Query 1210 CTATATTTGCCCTTGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAG 1269
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTATATTTGCCCTCGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAT 1199
Query 1270 CAATTCCAAGTGCTCTCATTGCTTTCTTTTCTGGTTTAGATGTTTTGGCAAGCCTCTTAT 1329
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1200 CAATTCCAAGTGCTCTCATCGCTTTCTTTTCGGGTTTAGATGTTTTGACAAGCCTCTTAT 1259
Query 1330 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTCGTGAGGAGATACT 1389
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1260 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTTGTGAGGAGATACT 1319
Query 1390 ACGTGAGACAAGATACTCCAAGAGTTCATCTCATTAAGCTCATCACTTGTCTCTTATTCG 1449
|||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1320 ACGTGAGACAAGTTACTCCAAGATTTCATCTCATTAAGCTCATCATTTGTCTCTTATTCA 1379
Query 1450 TCGTTGTTTCTTCAATGGGTACTTCGGCGTATTGGGGAATGCAGCGCAAGGGATCATGGA 1509
| |||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1380 TTGTTGCTTCTTCAATGGGGACTTCGGCTTATTGGGGAATGCAGCTCAAGGGATCATGGA 1439
Query 1510 TCGGTTACACAGTAACAGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATCGTATTCTTTG 1569
|||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1440 TCGGATACACAATAACCGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATTGTATTCTTTG 1499
Query 1570 TTCCTCAGCAACGAACACCGAAAGTGTGGGGCGTACCGTTAGTGCCATGGCTCCCGTGCT 1629
||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1500 TTCCTCAGCAAAGAACACCGAAGGTGTGGGGCGTACCATTAGTCCCATGGCTCCCGTGCT 1559
Query 1630 TATCAATAGCAACAAACATCTTTCTCATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1689
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1560 TATCAATCGCAACAAACATCTTTCTGATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1619
Query 1690 TTGGTGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1749
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TTGGGGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1679
Query 1750 TCGATATGGCTCATCAGCAAATTGTGCCAAGAACATAACAACTATGGAAAACAGAGAAGA 1809
|||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| |||||
Sbjct 1680 TCGATATGGCTCATCAGCAAATTGTGCCAAGATCTTAATAACTATG-AAAACAGTGAAGA 1738
Query 1810 AATGTAACCTCTGAAAAGGTCTCTTCCTTCCACCCTAGTGTTATTCTGC-TT-T--CTT- 1864
|||||||||||| |||||||||||||||||||| ||||||||||||||| || | |||
Sbjct 1739 AATGTAACCTCTCAAAAGGTCTCTTCCTTCCACTCTAGTGTTATTCTGCATTCTAGCTTT 1798
Query 1865 C---ATGAACTGCTTCGTTCTGTATTCTCTGTAATCTGCAAAA 1904
| || |||||| |||||||| | ||||||||||||||||||
Sbjct 1799 CTTCATCAACTGCATCGTTCTGGAATCTCTGTAATCTGCAAAA 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5