BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34980.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482462 jgi|Araly1|482462|fgenesh2_kg.4__1522__AT2G34980.1 1483 0.0
> Ahg482462 jgi|Araly1|482462|fgenesh2_kg.4__1522__AT2G34980.1
Length=902
Score = 1483 bits (803), Expect = 0.0
Identities = 870/903 (96%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 10 AATCTCGCCGGAGACTCAATTCCGGGACCCAAATGGAGGAAAGTAGCCTACGGAGGAATG 69
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 AATCTCGCCGGAGACTCAATTCCGAGACCCAAATGGAGGAAAGTGGCCTACGGAGGAATG 60
Query 70 CAAATCGGATACGACGACAATTACACAGACGAATCGTTCCTCGAGGAAATGGTGATGAAC 129
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 CAAATCGGATACGACGACAACTACACCGACGAATCGTTCCTCGAAGAAATGGTGATGAAC 120
Query 130 GCAAACGTAGTGAGACGTGATTTGCTCAAGGTGATGAAAGACTCTGTCTCAATCTCCCAA 189
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 121 GCAAACGTCGTGAGGCGTGATTTGCTCAAGGTGATGAAAGACTCTGTCTCTATCTCTCAA 180
Query 190 TACCTCTGCATCGTCGCGCTTGTAGTCTTGGTTTGGGTTCACACTCTTGAATCATCTTTG 249
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TACCTCTGCATCGTTGCGCTTGTTGTCTTGGTTTGGGTTCACACTCTTGAATCATCTTTA 240
Query 250 GACGAGAACTCGCTTTTGCTACTTGATCTCTCTCTCTTAGCATCAGGATTCTTAATTCTC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACGAGAACTCGCTTTTGCTACTTGATCTCTCTCTCTTAGCATCAGGATTCTTAATTCTC 300
Query 310 CTCTTAACCGAAGAAAAAATGTTATCTTTGAGTCTCCTCTTGCGTTACCTCGTCAACATC 369
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 301 CTCTTAACCGAAGAAAAAATGTTATCTTTGAGTCTCCTCTTGCGTTATCTCCTCAACATC 360
Query 370 TCCTTCTTCACCACGGGACTTTATATCTTAGCTCCGATTTACCAGACTCTCACGCGATCT 429
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 TCCTTCTTCACCACGGGGCTTTATATCTTAGCTCCGATTTACCAGACGCTAACGCGATCT 420
Query 430 ATCAGCTCAGATTCGATATGGGCAGTCACTGTTTCACTCCTCTTGCTTCATCTCTTCTTG 489
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATCAGCTCAGATTCGATATGGGCAGTCACAGTTTCACTCCTCTTGCTTCATCTCTTCTTG 480
Query 490 CATGATTACTCTGGTTCCACCATTAGAGCTCCAGGAGCACTCAAAACTCCGAATTTGACA 549
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATGATTACTCTGGCTCCACCATTAGAGCTCCAGGAGCACTCAAAACTCCGAATTTGACA 540
Query 550 AGCTGCATATCTGTCAATGCTTCAATTGTAGCATCAGTCTTTGTTGCTTCACGTCTTCCT 609
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AGCTGCATATCTGTCAATGCTTCAATTGTTGCATCAGTCTTTGTTGCTTCACGTCTTCCT 600
Query 610 TCTAGGCTCCATGTCTTTGCTGTGATGCTATTCTCACTTCAAGTCTTTCTCTTTGCGCCT 669
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 601 TCTAGGCTCCATGTTTTTGCTGTGATGCTTTTCTCACTCCAAGTCTTTCTCTTTGCGCCT 660
Query 670 CTTGTTACTTACTGCATCAAGAAATTCAACTTTGGGTTGCATCTTCTCTTCTCCTTTGCT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 661 CTTGTTACTTACTGCATCAAGAAATTCAACTTTGGGTTGCATCTTCTCTTCTCTTTTGGT 720
Query 730 CTAATGGGTTTGACGCTTTACTCTATTTATGCATTGCATAGACtcttcttccttgtcttt 789
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 CTAATGGGTTTGACGCTTTACTCTATTTATGCGTTGCATAGACTCTTCTTCCTTGTCTTT 780
Query 790 ctttct-cttgtgcttcttgtcaatgttgtgtgtccttATTGGCTCATTAGGATGCAAGA 848
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 781 CTT-CTTCTTGTGCTTCTTGTCAATGTTGTGTGCCCTTATTGGCTCATAAGGATGCAAGA 839
Query 849 GTATAAGTTTGAGATTAATGGTCCTTGGGATGAAGCCAAGCTTTGTTTCGACATTACAGA 908
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GTACAAGTTTGAGATCAATGGTCCTTGGGATGAGGCCAAGCTTTGTTTCGACATTACAGA 899
Query 909 TTG 911
|||
Sbjct 900 TTG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5