BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35000.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934108 jgi|Araly1|934108|scaffold_402096.1 1659 0.0
Ahg901342 jgi|Araly1|901342|Al_scaffold_0004_1992 1637 0.0
> Ahg934108 jgi|Araly1|934108|scaffold_402096.1
Length=2133
Score = 1659 bits (898), Expect = 0.0
Identities = 1077/1162 (93%), Gaps = 18/1162 (2%)
Strand=Plus/Plus
Query 353 CTTTCCATACGATGATCTTCAAATGGCGATCCTCGACACAAAGTCCAGCCGTTGGATCCC 412
|||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 2 CTTT-CATACGATGATCTTCATATGGCGATCATCGACACAAACTCCAGCCGTTGGATCCC 60
Query 413 ACACAACCTTCTCTTTCTTCTCCTCTTGCTCTTGCTCCAGTCAGTACCGTATGGATTCGG 472
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 61 TCACAACCTTCTCTTCCTTCTCCTCTTGCTATTGCTCCAGTCAGTACCGTATGGA-TC-- 117
Query 473 TCAGACTCAGACCACACCACCCGGAACAACAAAAACGAAA-CCTAACGATCCAGTTGTTG 531
| | |||||||||||| |||||||| ||| |||||||| || ||||||||| ||||||
Sbjct 118 -C-G-GTCAGACCACACCGCCCGGAACTACACAAACGAAAGCC-AACGATCCAATTGTTG 173
Query 532 TTGTAATCACGGTTTTGTTTTTAGTGATCTTTTTCATGGTCTTCGGTTCCATCTTCTGTC 591
| || || |||||| ||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 174 TAGTGATAACGGTTATGTTTGTGGTGATCTTCTTCATGGTCTTCGGTTCCATCTTCTGTC 233
Query 592 GTCGAAGCAACGCACAG-TTT--TCACGTTCTTCCATTTTCCGATCCACCGACGCAGACG 648
||||||||||||| | | ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 234 GTCGAAGCAACGCGCGGTTTTACTCACGTTCTTCTGTTTTCCGATCCACCGACGCAGACG 293
Query 649 CCGAGTCTCAG-GTCGTCAGGATCAGGAGGTTGACGGCGCGTGGGCTCGACGCGGAGGCT 707
| ||||| | | || || |||||||| |||| |||||||||||||||||| |||||||||
Sbjct 294 CGGAGTC-CCGCGTGGTGAGGATCAGAAGGTCGACGGCGCGTGGGCTCGAGGCGGAGGCT 352
Query 708 ATAGAAACTTTCCCGACGTTTCTTTACTCGGAGGTGAAGGCGGTGAGGATCGGGAAAGGT 767
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 353 ATAGAATCTTTCCCGACGTTTCTTTACTCGGAGGTGAAGGCGGTGAGGATCGGTAAAGGT 412
Query 768 GGTGTGGAGTGTGCGGTTTGTCTCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGTGTGGAGTGTGCGGTTTGTCTCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATG 472
Query 828 CCTCCTTGTTGCCACGTGTTTCACGCCGATTGTGTTGACGTCTGGCTCTCAGAACACTCC 887
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 473 CCTCCTTGTTGCCACGTGTTTCACGTCGATTGCGTTGACGTCTGGCTCTCAGAACACTCC 532
Query 888 ACGTGTCCTCTCTGTAGAGCGGATCTTGTCCTAAACCAACAAGGTGACGACGACGACAGC 947
|||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 533 ACGTGTCCTCTCTGTAGAGCGGATCTTGTCCTCAGCCAACATGGTGACGACGACGACAGT 592
Query 948 ACTGAAAGCTACTCGGGTACGGATCCAGGTACGATTTCGTCGAGTACGGATCCTGAGAGA 1007
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 593 ACTGAAAGCTACTCGGGTACAGATCCGGGTACGATTTCGTCGGGTACGGATCCTGAGAGA 652
Query 1008 GGAATGGTTTTGGAATCTTCGGACGCGCATTTGCTGGATGCTGTGACGTGGAGCAATAGT 1067
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 653 GGAATGGTTTTGGAATCTTCGGACGCGCATTTGCTGGATGGAGTGACGTGGACCAATAGT 712
Query 1068 AACATAACACCTCGGTCAAAGTCAACGGGGTTATCCAGCTGGCAAATAACCGGAATTTTG 1127
|||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 713 AACATAACGCCTCGGTCAAAGTCAACGGGATTATCCAGCTGGCGTATAACCGGAATTTTG 772
Query 1128 TTCCCGAGATCGCACTCGACCGGACATTCGTTAATTCAACCGGCTGGGAATCTAGACCGG 1187
||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 773 TTCCCGAGATCTCATTCGACCGGACATTCGTTGGTTCAACCGGCTGGAAATCTAGACCGG 832
Query 1188 TTTACGTTGAGGTTACCGGATGATGTACGACGGCAACTT-ATGAAGACATCGAGGACGAT 1246
|||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct 833 TTTACGTTGACCTTACCTGATGATGTACGACGGCAA-TTGATGAAGACATCGAGGACGAT 891
Query 1247 GGGACACGTGGCGTTACTACCTCAGGCGAGGAGTTCACGGAGCGGTTATAGAAGCGGTAG 1306
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 892 GGGACACGTGGCGTTATTACCTCAGGCGAGGAGTTCACGGAGCGGTTACAGAAGCGGTAG 951
Query 1307 CGTCGGGAGCGAGAGAAGCGCTTTCCCGTACGGACGTAAGAGTAATAATAACAATCGACG 1366
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 952 CGTCGGGAGCGAGAGAAGCGTTTTTACGTACGGACGGAAGAGTAATAATAACAATCGACG 1011
Query 1367 GCTTCATTCGCTGTCTTTTTCATTCTCTTTCCGGAGTGGTTCCGTACGGTCTACTTTCTC 1426
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1012 GCTGCATTCGCTGTCTTTTTCATTCTCTTTCCGGAGTGGTTCTGTGCGGTCTACTTTCTC 1071
Query 1427 CGGAGATGCGCCGAAGAATCTTCCGACATC-GATTGAAGCTGGTGAACGGTCTTTCGAAC 1485
|||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1072 CGGAGATGCGCCAAAGAATCTTCCGACATCTG-TCGAAGCTGGTGAACGGTCTTTCGAAC 1130
Query 1486 GGCTCCGACCAGATGAACGAGT 1507
|||||||||||||||| |||||
Sbjct 1131 GGCTCCGACCAGATGATCGAGT 1152
> Ahg901342 jgi|Araly1|901342|Al_scaffold_0004_1992
Length=1134
Score = 1637 bits (886), Expect = 0.0
Identities = 1061/1144 (93%), Gaps = 17/1144 (1%)
Strand=Plus/Plus
Query 375 ATGGCGATCCTCGACACAAAGTCCAGCCGTTGGATCCCACACAACCTTCTCTTTCTTCTC 434
||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGCGATCATCGACACAAACTCCAGCCGTTGGATCCCTCACAACCTTCTCTTCCTTCTC 60
Query 435 CTCTTGCTCTTGCTCCAGTCAGTACCGTATGGATTCGGTCAGACTCAGACCACACCACCC 494
|||||||| |||||||||||||||||||||||| || | | |||||||||||| |||
Sbjct 61 CTCTTGCTATTGCTCCAGTCAGTACCGTATGGA-TC---C-G-GTCAGACCACACCGCCC 114
Query 495 GGAACAACAAAAACGAAA-CCTAACGATCCAGTTGTTGTTGTAATCACGGTTTTGTTTTT 553
||||| ||| |||||||| || ||||||||| ||||||| || || |||||| ||||| |
Sbjct 115 GGAACTACACAAACGAAAGCC-AACGATCCAATTGTTGTAGTGATAACGGTTATGTTTGT 173
Query 554 AGTGATCTTTTTCATGGTCTTCGGTTCCATCTTCTGTCGTCGAAGCAACGCACAG-TTT- 611
|||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 174 GGTGATCTTCTTCATGGTCTTCGGTTCCATCTTCTGTCGTCGAAGCAACGCGCGGTTTTA 233
Query 612 -TCACGTTCTTCCATTTTCCGATCCACCGACGCAGACGCCGAGTCTCAG-GTCGTCAGGA 669
||||||||||| ||||||||||||||||||||||||| ||||| | | || || ||||
Sbjct 234 CTCACGTTCTTCTGTTTTCCGATCCACCGACGCAGACGCGGAGTC-CCGCGTGGTGAGGA 292
Query 670 TCAGGAGGTTGACGGCGCGTGGGCTCGACGCGGAGGCTATAGAAACTTTCCCGACGTTTC 729
|||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 293 TCAGAAGGTCGACGGCGCGTGGGCTCGAGGCGGAGGCTATAGAATCTTTCCCGACGTTTC 352
Query 730 TTTACTCGGAGGTGAAGGCGGTGAGGATCGGGAAAGGTGGTGTGGAGTGTGCGGTTTGTC 789
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 TTTACTCGGAGGTGAAGGCGGTGAGGATCGGTAAAGGTGGTGTGGAGTGTGCGGTTTGTC 412
Query 790 TCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATGCCTCCTTGTTGCCACGTGTTTC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATGCCTCCTTGTTGCCACGTGTTTC 472
Query 850 ACGCCGATTGTGTTGACGTCTGGCTCTCAGAACACTCCACGTGTCCTCTCTGTAGAGCGG 909
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACGTCGATTGCGTTGACGTCTGGCTCTCAGAACACTCCACGTGTCCTCTCTGTAGAGCGG 532
Query 910 ATCTTGTCCTAAACCAACAAGGTGACGACGACGACAGCACTGAAAGCTACTCGGGTACGG 969
|||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 533 ATCTTGTCCTCAGCCAACATGGTGACGACGACGACAGTACTGAAAGCTACTCGGGTACAG 592
Query 970 ATCCAGGTACGATTTCGTCGAGTACGGATCCTGAGAGAGGAATGGTTTTGGAATCTTCGG 1029
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCCGGGTACGATTTCGTCGGGTACGGATCCTGAGAGAGGAATGGTTTTGGAATCTTCGG 652
Query 1030 ACGCGCATTTGCTGGATGCTGTGACGTGGAGCAATAGTAACATAACACCTCGGTCAAAGT 1089
|||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 653 ACGCGCATTTGCTGGATGGAGTGACGTGGACCAATAGTAACATAACGCCTCGGTCAAAGT 712
Query 1090 CAACGGGGTTATCCAGCTGGCAAATAACCGGAATTTTGTTCCCGAGATCGCACTCGACCG 1149
||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 713 CAACGGGATTATCCAGCTGGCGTATAACCGGAATTTTGTTCCCGAGATCTCATTCGACCG 772
Query 1150 GACATTCGTTAATTCAACCGGCTGGGAATCTAGACCGGTTTACGTTGAGGTTACCGGATG 1209
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 773 GACATTCGTTGGTTCAACCGGCTGGAAATCTAGACCGGTTTACGTTGACCTTACCTGATG 832
Query 1210 ATGTACGACGGCAACTT-ATGAAGACATCGAGGACGATGGGACACGTGGCGTTACTACCT 1268
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 ATGTACGACGGCAA-TTGATGAAGACATCGAGGACGATGGGACACGTGGCGTTATTACCT 891
Query 1269 CAGGCGAGGAGTTCACGGAGCGGTTATAGAAGCGGTAGCGTCGGGAGCGAGAGAAGCGCT 1328
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 892 CAGGCGAGGAGTTCACGGAGCGGTTACAGAAGCGGTAGCGTCGGGAGCGAGAGAAGCGTT 951
Query 1329 TTCCCGTACGGACGTAAGAGTAATAATAACAATCGACGGCTTCATTCGCTGTCTTTTTCA 1388
|| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 952 TTTACGTACGGACGGAAGAGTAATAATAACAATCGACGGCTGCATTCGCTGTCTTTTTCA 1011
Query 1389 TTCTCTTTCCGGAGTGGTTCCGTACGGTCTACTTTCTCCGGAGATGCGCCGAAGAATCTT 1448
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1012 TTCTCTTTCCGGAGTGGTTCTGTGCGGTCTACTTTCTCCGGAGATGCGCCAAAGAATCTT 1071
Query 1449 CCGACATC-GATTGAAGCTGGTGAACGGTCTTTCGAACGGCTCCGACCAGATGAACGAGT 1507
|||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 CCGACATCTG-TCGAAGCTGGTGAACGGTCTTTCGAACGGCTCCGACCAGATGATCGAGT 1130
Query 1508 GTAA 1511
||||
Sbjct 1131 GTAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5