BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35010.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482466 jgi|Araly1|482466|fgenesh2_kg.4__1526__AT2G35010.2 974 0.0
Ahg473345 jgi|Araly1|473345|fgenesh2_kg.1__3299__AT1G31020.1 298 5e-80
> Ahg482466 jgi|Araly1|482466|fgenesh2_kg.4__1526__AT2G35010.2
Length=864
Score = 974 bits (527), Expect = 0.0
Identities = 593/626 (95%), Gaps = 0/626 (0%)
Strand=Plus/Plus
Query 128 ATGAAGGGAAATTGGTCGATCGTACGAAAGGTTCTTCATCGCCAGTTCTCCACTCTCCGT 187
||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||
Sbjct 38 ATGAAGGGAAATTGGTCGATCGTCCGTCAGGTTCTTCACCGCCGGTTCTCCACTCTCCGG 97
Query 188 TCCTCGACACCATCGTCGCGATTATCTACTTCCATCCGACCGCTTGTTCTGGCCCCAAAC 247
|||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||
Sbjct 98 TCCTCGACACCATCGTCGCGATTATCCACTTTCGTCCGACCCCTTGTTCTGGCCCCAAAC 157
Query 248 TCGATATCGTCGCTAATCGCTAGAAATTCGTTGTTCACTGCCTCCAACATTGGTCCATCC 307
||||| || ||||| ||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 158 TCGATGTCATCGCTGATCGCTAGAAACTCGTTGTTTACTGCCTCCACCATTGGTCCATCC 217
Query 308 ATCGATTTTAACTTCTCCAACACTTCGCTTCCTCATCGGAGAAGCCTCTGTTCGGAAGCT 367
|||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 218 ATCGATTTTAACTTCTCCAACACTTCGCTTCCTCGCCGGAGAAGCTTCGGTTCGGAAGCT 277
Query 368 GGAGGTGAAAATGGTGTTGTTCTAGTGAAATCAGAGGAAGAGTTCATCAATGCAATGAGC 427
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 278 GGAGGTGAAAACGGTGTTGTTATAGTGAAATCAGAGGAAGAGTTCATCAATGCAATGAGC 337
Query 428 AAAGCTCAAGATGGATCTTTACCATCGGTCTTCTATTTCACTGCCGCCTGGTGTGGACCA 487
||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 338 AAAGCTCAAGATGAATCTTTACCGTCGATCTTCTATTTCACTGCCGTCTGGTGTGGACCA 397
Query 488 TGCAGGTTTATCTCTCCTGTAATCGTGGAGCTTAGTAAACAATATCCCGATGTAACTACG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TGCAGGTTTATCTCTCCTGTAATCGTGGAGCTTAGTAAACAATATCCCGATGTAACTACG 457
Query 548 TATAAAGTCGACATTGATGAGGGCGGGATTTCGAACACTATCAGCAAGTTGAATATCACG 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TATAAAGTCGACATTGATGAGGGCGGGATTTCGAACACTATCAGCAAGTTGAATATCACG 517
Query 608 GCTGTGCCAACACTGCATTTCTTCAAAGGAGGCTCGAAGAAAGGGGAGGTTGTGGGTGCA 667
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 518 GCTGTGCCAACACTGCATTTCTTCAAAGGAGGCTCGAAGAAAGGCGAGGTTGTGGGTGCA 577
Query 668 GATGTCACGAAGCTGAAGAATCTCATGGAACAGCTCTACAAGTGAAGACCTAATCCGTTC 727
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 578 GATGTCACGAAACTGAAGAATCTCATGGAACAGCTCTACAAGTGAAGACCCAATCTTTTC 637
Query 728 TAGTAAAGAACGTGTTGAATAGCTGC 753
|||||| ||||||||||||||| |||
Sbjct 638 TAGTAATGAACGTGTTGAATAGTTGC 663
> Ahg473345 jgi|Araly1|473345|fgenesh2_kg.1__3299__AT1G31020.1
Length=630
Score = 298 bits (161), Expect = 5e-80
Identities = 272/326 (83%), Gaps = 5/326 (2%)
Strand=Plus/Plus
Query 393 TGAAATCAGAGGAAGAGTTCATCAATGCAATGAGCAAAGCTCAAGATGGATCTTTACCAT 452
||||||| |||| ||||||| || |||| |||| ||||||| |||||||||||| ||||
Sbjct 182 TGAAATCGGAGGCGGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCAT 241
Query 453 CGGTCTTCTATTTCACTGCCGCCTGGTGTGGACCATGCAGGTTTATCTCTCCTGTAATCG 512
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 242 CGGTTTTCTATTTCACTGCCGCCTGGTGTGGACCTTGCAGGCTTATCTCTCCTGTAATAT 301
Query 513 TGGAGCTTAGTAA-ACAATATCCCGATGTAACTACGTATAAAGTCGACATTGATGAGGGC 571
||||||| ||||| | ||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 302 TGGAGCTCAGTAATA-AATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 360
Query 572 GGGATTTCGAACACTATCAGCAAGTTGAATATCACGGCTGTGCCAACACTGCATTTCTTC 631
|| |||| || |||| | ||||| ||| || | |||||||||||| |||| ||||||
Sbjct 361 GGTCTTTCAAATGCTATTGGGAAGTTAAATGTCTCTGCTGTGCCAACATTGCAATTCTTC 420
Query 632 AAAGGAGGC-TCGAAGAAAGGGGAGGTTGTGGGTGCAGATGTCACGAAGCTGAAGAATCT 690
||||| ||| | |||||||| ||| |||| || | ||||| || |||||||| | |
Sbjct 421 AAAGGTGGCGT-GAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGT 479
Query 691 CATGGAACAGCTCTACAAGTGA-AGA 715
||||||||| || ||||||||| |||
Sbjct 480 CATGGAACAACTATACAAGTGAGAGA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5