BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35020.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482467 jgi|Araly1|482467|fgenesh2_kg.4__1527__AT2G35020.1 2593 0.0
Ahg473349 jgi|Araly1|473349|fgenesh2_kg.1__3303__AT1G31070.2 1450 0.0
> Ahg482467 jgi|Araly1|482467|fgenesh2_kg.4__1527__AT2G35020.1
Length=1673
Score = 2593 bits (1404), Expect = 0.0
Identities = 1600/1692 (95%), Gaps = 24/1692 (1%)
Strand=Plus/Plus
Query 93 ATGAAGGAGCCAACGACGGAGATAGAGATTGAAACTTCAGCTGTCGCAACGATCCTGCCT 152
||||||||||||||||||||||||||||||||| |||| ||||| | |||| | |
Sbjct 1 ATGAAGGAGCCAACGACGGAGATAGAGATTGAAGCTTCGGCTGT--C-ACGA--C-G--- 51
Query 153 CCTCCTCTTCCTCCGACGGCGTCACCTCATCAAGCGTTAGTCGAGAGGCTCAAGGATTAT 212
| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 52 -AT--GCTGCCTCCGACGGCGTCACCTCATCAGGCGTTAGTGGAGAGGCTCAAGGATTAT 108
Query 213 GGACAGGAAGATGTTTTCTCTCTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTC 272
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GGACAGGAAGATGTTTTCGCTCTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTC 168
Query 273 CT-CAGAGATATCGAGAATTTGGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACT 331
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CTCCA-AGATATCGAGAATTTGGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACT 227
Query 332 TCATTCACAAGGGTTGCCAGTGGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAAC 391
||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TCAGTCTCAAGGTTTACCAGTGGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAAC 287
Query 392 GGTGGAGGAAAGAACTAAGGAAGACAGAGAAAAATGGTGGAAAATGGGATTAAAAGCTAT 451
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 288 GGTGGAGGAAAGAACAAAGGAAGACAGAGAAAAATGGTGGAAAATGGGATTGAAAGCTAT 347
Query 452 CTACGAAGGCAAATTGGGTGTGGTGCTTTTATCTGGTGGACAGGGAACAAGACTTGGAAG 511
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 348 CTACGAAGGGAAATTGGGTGTGGTTCTTTTATCTGGTGGACAGGGAACGAGACTTGGAAG 407
Query 512 TTCAGATCCAAAAGGGTGTTATAATATCGGACTGCCATCTGGGAAATCACTTTTTCAGAT 571
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 408 TTCAGATCCAAAAGGGTGTTATAATATCGGACTGCCATCTGGGAAGTCACTTTTTCAGAT 467
Query 572 TCAAGCTGAGAGGATCTTATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGGCAAG 631
|||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 468 TCAAGCTGAGAGTATCTTGTGTGTCCAAAGGCTTGCTGCTCAGGCAATGAGTGAGGCAAG 527
Query 632 TCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACC 691
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 TCCAACTCGCCCAGTTACAATACACTGGTATATAATGACCAGTCCATTTACTCATGAACC 587
Query 692 AACACAAAAATTCTTCAAGAGTCACAAGTATTTTGGCCTTGAACCAGATCAAGTCACCTT 751
||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 588 AACTCAAAAATTCTTCGAGAGTCACAAGTATTTTGGCCTTGAGCCAGATCAGGTCACCTT 647
Query 752 TTTTCAACAAGGAACTCTGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACC 811
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TTTTCAACAAGGAACTCTACCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACC 707
Query 812 TTTCAGCCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAGCTTTAAAATCTTC 871
|||||| ||| ||||||| |||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 708 TTTCAGTCTAGCCAAGGCTCCGGATGGAAACGGGGGAGTTTATGCAGCTCTAAAATCTTC 767
Query 872 AAGGTTATTAGAAGATATGGCTTCGAGGGGGATTAAATATGTGGATTGCTATGGTGTTGA 931
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 AAGGTTATTTGATGATATGGCTTCGAGGGGGATTAAGTATGTGGATTGCTATGGTGTTGA 827
Query 932 CAATGTTCTGGTTCGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAAGTGC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 CAATGTTCTGGTTCGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAGGTGC 887
Query 992 AGCTTCAGCTGCAAAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGCTTCAGCTGCAAAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGT 947
Query 1052 AAGGAGGGGAAAAGGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTAT 1111
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AAGGAGGGGAAAGGGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTAT 1007
Query 1112 GGCTTCTGCAACTAATCAACAAACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTT 1171
|||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1008 GGCTTCTGCAACCAATCAACAAACAGGACGTCTTCAATTTTGCTGGAGTAATGTGTGCTT 1067
Query 1172 ACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGT 1127
Query 1232 TTACCATTTGGCGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACT 1291
|||||||||||||||||||||||| || ||||||||||| |||| ||||||||| |||||
Sbjct 1128 TTACCATTTGGCGGAGAAGAAGATCCCCTCTATAAATGGGGACACAGTGGGACTGAAACT 1187
Query 1292 AGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGGTGTT 1351
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1188 AGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTCTTTGAGGTGTT 1247
Query 1352 GAGGGAGGAAGAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAATTACGACACACCGGA 1411
|||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1248 GAGGGAGGAAGAGTTTGCTCCGGTGAAGAACGCGAACGGGTCGAATTTCGACACACCGGA 1307
Query 1412 AAGCGCAAGACTGTTGGTTCTACGACTGCATACACGTTGGGTCATAGCAGCTGGTGGATT 1471
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1308 AAGCGCGAGACTGTTGGTTCTACGGCTGCACACACGTTGGGTCATAGCAGCTGGTGGATT 1367
Query 1472 TCTAACACATTCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCATTGTGCTCGTA 1531
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 TCTAACACACTCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCGTTGTGCTCGTA 1427
Query 1532 CGCTGGAGAAAATCTAGAAGCGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAAAT 1591
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1428 CGCTGGAGAAAATCTAGAAACGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAGAT 1487
Query 1592 CTCCCtctaatcttcttctttctttttcttatctattcttgtaattttgtcat-tgtctt 1650
|||||||||||||| | ||| ||| ||||| |||| ||||||||| | ||| | ||||
Sbjct 1488 CTCCCTCTAATCTT-T-CTTGCTT---CTTATTTATTGTTGTAATTTGGCCATCT-TCTT 1541
Query 1651 tgctttttcttttggcttggttcttcttttgtgttggtgtttggtctctATATATGAACT 1710
||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||
Sbjct 1542 TGCTTTTTCTTTTGGCTTGTTTCTCCTTTTTTGTTGGTGTTTGGTCTTTATATATGAACT 1601
Query 1711 GTAACTGGCGGAGGTGGTCA---GTAGTCTCTTTTCAATGTGTTACTCTTCATTATTGCA 1767
|||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1602 GTAACTGGCGGAGGAGGTCAATAGTAGTCTCTTTTCAATGTGTTTCTCTTCATTATTGCA 1661
Query 1768 ACAATAGTGAAG 1779
||||||||||||
Sbjct 1662 ACAATAGTGAAG 1673
> Ahg473349 jgi|Araly1|473349|fgenesh2_kg.1__3303__AT1G31070.2
Length=1800
Score = 1450 bits (785), Expect = 0.0
Identities = 1227/1441 (85%), Gaps = 27/1441 (2%)
Strand=Plus/Plus
Query 174 TCACCTCATCAAGCGTTAGTCGAGAGGCTCAAGGATTATGGACAGGAAGATGTTTTCTCT 233
||||| | |||||| ||||| ||||| | || ||||||||||| ||||| ||||||||
Sbjct 172 TCACCGCGTCAAGCTTTAGTTGAGAGATTAAAAGATTATGGACAAGAAGACATTTTCTCT 231
Query 234 CTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTCCTCAGAGATA-TCGAGAATTT 292
|| ||||||||||| ||||| || ||| |||| | ||| | ||||| | | ||||||||
Sbjct 232 CTTTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGA-AGTTGAGAATTT 290
Query 293 GGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACTTCATTCACAAGGGTTGCCAGT 352
|||||||||||| |||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct 291 GGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGT 350
Query 353 GGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAACGGTGGA-GGAAAGAACTAA-G 410
|||||| || |||||||| ||||||||||| || || || || || || |||||| || |
Sbjct 351 GGCGGCGATCGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGG-AAGAAC-AATG 408
Query 411 GAAGACAGAGAAAAATGGTGGAAAATGGGATTAAAAGCTATCTACGAAGGCAAATTGGGT 470
||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 409 GAAGATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGT 468
Query 471 GTGGTGCTTTTATCTGGTGGACAGGGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGT 530
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 469 GTTGTGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGT 528
Query 531 TAT-AATATCGGACTGCCATCTGGGAAATCACTTTTTCAGATTCAAGCTGAGAGGATCTT 589
| | ||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||
Sbjct 529 T-TCAATATCGGACTGCCATCAGGGAAATCGCTCTTTCAGATTCAAGCAGAGAGAATCTT 587
Query 590 ATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGGCAAGTCCAACTCGCCCAGTTAC 649
||||| ||||| |||||| |||| | | ||||||| | |||||| ||| ||||||||
Sbjct 588 GTGTGTTCAAAGACTTGCTGCTCAAGTAGTGAGTGA---AGGTCCAATTCGTCCAGTTAC 644
Query 650 AATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACCAACACAAAAAT-TCTTCA 708
|||||| |||||||| ||||| |||||||||||| ||||| | |||| ||||| | |||
Sbjct 645 AATACACTGGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATAT-TTCT 703
Query 709 AGAGTCACAAGTATTTTGGCCTTGAACCAGATCAAGTCACCTTTTTT-CAACAAGGAAC- 766
|||||||||||| ||||| ||||||||||||||| ||| |||||| |||||||| ||
Sbjct 704 CGAGTCACAAGTACTTTGGTCTTGAACCAGATCAAATCA-GTTTTTTCCAACAAGGTACA 762
Query 767 TCTGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGCCTAT-CCA 825
| |||||||| || |||||||||| |||||||||||||||||||||||||| || | | |
Sbjct 763 T-TGCCTTGCGTTACAAAGGATGGAAAGTTTATCATGGAGACACCTTTCAGTCT-TGCTA 820
Query 826 AGGCGCCGGATGGGAACGG-GGGAGTTTATACAGCTTTAAAATCTTCAAGGTTATTAGAA 884
| || || ||||| ||||| ||| || ||| | || |||| | ||||||| |||||||
Sbjct 821 AAGCTCCAGATGGTAACGGCGGG-GTCTATGCGGCGCTAAAGTGTTCAAGGCTATTAGAG 879
Query 885 GATATGGCTTCGAGGGGGATTAAATATGTGGATTGCTATGGTGTTGACAATGTTCTGGTT 944
|| |||||||| || || |||||||| || ||||||||||| ||||||||||| ||||||
Sbjct 880 GACATGGCTTCTAGAGGAATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTT 939
Query 945 CGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAAGTGCAGCTTCAGCTGCA 1004
||||||||||| ||||||||||| |||||||| ||||| ||| | || ||||| ||||||
Sbjct 940 CGAGTAGCTGATCCTACTTTTCTTGGATACTTTATCGATAAAGGCGCTGCTTCGGCTGCA 999
Query 1005 AAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGTAAGGAGGGGAAAA 1064
||||| ||||| ||||||||||| || ||| | |||||||||||||| || || || |||
Sbjct 1000 AAAGTTGTGCGGAAGGCATATCCTCAAGAACAGGTTGGAGTATTTGTTAGAAGAGGCAAA 1059
Query 1065 GGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTATGGCTTCTGCAACT 1124
|| || || ||||| ||||||||||| | |||||||| ||||||||||||||||| | |
Sbjct 1060 GGCGGACCGTTGACAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATT 1119
Query 1125 AATCAACA-AACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTCAC 1183
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1120 AATCAA-AGAACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTAC 1178
Query 1184 TCTGGATTTCCTTAACCAAGTTGCGAATGGGC-TGGAAAAAGACAGCGTTTACCATTTGG 1242
| | ||||||||||| ||||| || || ||| | |||||||||||||| ||||||||||
Sbjct 1179 TTTAGATTTCCTTAATCAAGTCGC-AACCGGCCTAGAAAAAGACAGCGTCTACCATTTGG 1237
Query 1243 CGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCA 1302
|||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||| ||||
Sbjct 1238 CGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTGAAACTAGAACAATTCA 1297
Query 1303 TATTCGATT-GCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGGTGTTGAGGGAGGAA 1361
| || |||| | ||||| ||||||||||| || ||||| |||||||| || ||||| ||
Sbjct 1298 TTTTTGATTCG-TTTCCATATGCTCCTTCAACCGCACTCTTTGAGGTATTAAGGGAAGAG 1356
Query 1362 GAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAATTACGACACACCGGAAAGCGCAAGA 1421
||||||||||| |||||||||| ||||||||||||| ||| ||||||||||| || ||
Sbjct 1357 GAGTTTGCACCAGTGAAGAACGTGAACGGGTCGAATTTCGATACACCGGAAAGTGCGAGG 1416
Query 1422 CTGTTGGTTCTACGACTGCATACACGTTGGGTCATAGCAGCTGGTGGATTTCTAACACAT 1481
|| ||||||||| | || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1417 CTTTTGGTTCTAAGGCTACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACAT 1476
Query 1482 TCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCATTGTGCTCGTACGCTGGAGAA 1541
|| || ||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||
Sbjct 1477 TCTGTGCCTTTATATGCAACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAA 1536
Query 1542 AATCTAGAAGCGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAAATCTCCCtctaa 1601
||||| ||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct 1537 AATCTTGAAGCTATTTGTCGAGGAAGAACGTTTCATGCACCTTGTGAAATATCCCTCTAA 1596
Query 1602 t 1602
|
Sbjct 1597 T 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5