BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35035.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482469 jgi|Araly1|482469|fgenesh2_kg.4__1529__AT2G35035.1 1430 0.0
> Ahg482469 jgi|Araly1|482469|fgenesh2_kg.4__1529__AT2G35035.1
Length=887
Score = 1430 bits (774), Expect = 0.0
Identities = 852/890 (96%), Gaps = 3/890 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACAGGGAAAGTGGTGGTGGAGAAAGTGGGAGGAAGATCTACAGCTACGAGCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGCGACAGGGAAAGTGGTGGTGGAGAAAGTGGGAGGAAGATCTACGGCTACGAGTTGC 60
Query 61 TTCTCGAAGTATCCTCTCAAGTTCTTACTTCCTAGCAAGGCAGCTCCTGCTGGAACTGAC 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCTCTAAGTATCCTCTCAAGTTCTTACTTCCTAGCAAGGCAGCTCCTGCCGGAACTGAC 120
Query 121 GTTGTCTGGATTTACAGTATCACTTATGGTGGCGGCATTGTCTCTGGCGATTCGATTTCA 180
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 121 GTTGTCTGGATTTACAGTATCACCTATGGTGGCGGCATTGTCTCTGGAGATTCGATTTTA 180
Query 181 TGTGAATTCACAATTGGTGATGGATGCACTGCAGTTATTACAACGCAGTCTTCTACTAAG 240
||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 TGTGAATTCACTATAGGTGATGGATGCACTGCAGTGATTACAACACAGTCTTCTACTAAG 240
Query 241 GTGTACAAGGCAATAGGATCAAAGTGTTCTGAACAGATATTGGAAGCGAGAATCGGGAGT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GTGTACAAGGCAATAGGATCAAAGTGTTCTGAACAAATATTGGAAGCGAGAATCGGGAGT 300
Query 301 GAAGCTCTTTTGGTTGTGATACCAGATCCAGTGACTTGCTTCTCCACTGCCCGGTACTAT 360
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GGAGCTCTTTTGGTTGTGATACCAGATCCAGTGACTTGTTTCTCCACTGCCCGGTACTAT 360
Query 361 CAGAAACAGATCTTTAGATTGCTTTCAGATTCCAATCTGGTCCTTGTGGATTGGATCACA 420
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 361 CAGAAACAGATTTTTAGATTGCTTTCAGACTCTAATCTGGTCCTTGTGGATTGGATCACA 420
Query 421 AGCGGGCGTCACGCTAATGGCGAAAAATGGGATTTCGAGTTTTATAAGAGCATCAACAAC 480
|||||||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 AGCGGGCGCCATGCAAATGGCGAAAAATGGGATTTTGAGTTTTATAAGAGCATCAACAAT 480
Query 481 GTCTACCTGGAAGATGATCACCCTTTATTCCTTGACACAGTGCTACTAGAGAAGAGGAGC 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GTCTACCTGGAAGATGATCACCCTTTATTCCTTGACACAGTACTACTAGAGAAGAGGAGC 540
Query 541 ATCCAAAGCATAGCCGAACGGATGCAAGACTATCAAGCTATAGCAATGGTCATACTCTTC 600
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 541 ATCCAAAGCATAGCCGAACGGATGCAAGACTATCACGCCATAGCAATGGTCATACTTTTC 600
Query 601 GGGGCAAAGCTGAAGGAAATCCAAAAGCAAGTCCAAGAAAATGTGAAAAACATGATGTCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 GGGGCAAAGCTGAAGGAAATCCAAAAGCAAGTCCAAGAAAATGTGAAAAATATGATGTCG 660
Query 661 GAACAATTACAGCTCTCTTATAGTTCTCGGAGACACAAGTCTGAGTCAAGCTCTCGTAAT 720
|||||||||||| ||| | || |||||||||||||||||||||||||||||||| |||||
Sbjct 661 GAACAATTACAGATCT-T-AT-GTTCTCGGAGACACAAGTCTGAGTCAAGCTCTAGTAAT 717
Query 721 CGCTTCATGAAACCAGAGTTTATAGCTTCCTGTAGCACTTTCGGCCCTGAGGGAAAGGGA 780
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 718 CGCTTCATGAAACCAGAGTTTATAGCTTCCTGCAGCACTTTCGGCCGTGAGGGAAAGGGA 777
Query 781 GTTGTGGTTAGAATAGCTTCGGATTCTACAGAGTCTGTCTACAATTTTTTGAGGCAACAA 840
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 GTTGTGATTAGAATAGCTTCGGATTCTACAGAGTCTGTCTACAATTTCTTGAGGCAACAA 837
Query 841 TTGGCTGAGCTTGAACCAGTTCTTGGTCAAGCTCCTTATGCTTGACTCTT 890
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 838 TTGGCTGAGCTTGAACCACTTCTTGGTCAAGCTCCTTATGCTTGACTCTT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5