BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35040.1
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482470 jgi|Araly1|482470|fgenesh2_kg.4__1530__AT2G35040.1 3225 0.0
> Ahg482470 jgi|Araly1|482470|fgenesh2_kg.4__1530__AT2G35040.1
Length=2006
Score = 3225 bits (1746), Expect = 0.0
Identities = 1927/2012 (96%), Gaps = 21/2012 (1%)
Strand=Plus/Plus
Query 1 GTTTCAAAATCAGACTACTATGCTCAG---CTCAG---CCGCCACCGCCACCTCCGTGAG 54
|||||||||||| |||||||||||||| | | | ||||||||||||||||||||||
Sbjct 1 GTTTCAAAATCAAACTACTATGCTCAGTTCCGCCGCCACCGCCACCGCCACCTCCGTGAG 60
Query 55 TGCTCGCTCCGGCGATATTCTCTGCGGCTTGTTTCGCAAAAAATCCGTCGCGCCTTTTCG 114
||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct 61 TGCTCGCTCCGGCGATATTCTATACGGCTACTTTCGCAAGAAATCCGTCGCGCCTTTTCG 120
Query 115 TTTTACTCAGCCTGTCTATCGTACGTCGCTGTGTCCAAGTTTCGTTGCTGTTCGAGCCAT 174
||| |||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 121 TTTGGCTCAGCCTATCTCTCGTACGTCGCTGCGTCCGAGTTTCGTTGCGGTTCGAGCCAT 180
Query 175 GGCAGAGTCTCAGACTGCTCAGAGGAATCAGCCGCAATCCTCAGGCTCCTCTGGGGAGAA 234
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GGCGGAGTCTCAGACTGCTCAGAGGAATCAGCCGCAATCCTCAGGCTCCTCTGGGGAAAA 240
Query 235 GCAAGCTTTGATATCTCTATCTGACAAGAGGGACTTGGCTTCTCTTGGCAACGGTCTGCA 294
|||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 241 GCAAGCTTTGATATCTTTATCTGACAAAAGAGATTTGGCTTCTCTTGGCAACGGTCTGCA 300
Query 295 AGAATTGGGATACACTATTGTTTCTACTGGAGGAACTGCCTCTACTTTGGAGAATGCTGG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAATTGGGATACACTATTGTTTCTACTGGAGGAACTGCCTCTACTTTGGAGAATGCTGG 360
Query 355 AGTCTCTGTGACCAAAGTGGAGAAGCTTACTCATTTTCCAGAAATGCTTGATGGCCGTGT 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 AGTCTCTGTGACCAAAGTGGAGAAGCTTACTCATTTTCCAGAAATGCTTGATGGTCGTGT 420
Query 415 GAAAACTTTGCATCCAAACATACATGGTGGTATCCTCGCTAGAAGGGATGTGGAGCATCA 474
|||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 421 GAAAACTTTGCACCCAAACATACACGGTGGTATTCTTGCTAGAAGAGATGTGGAGCATCA 480
Query 475 TATGGAAGCTCTTAATGAGCATGGGATTGGTACATTTGATGTTGTGGTTGTCAATTTGTA 534
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 TATGGAAGCTCTTAATGAGCATGGGATTGGTACATTTGATGTGGTGGTTGTCAATTTGTA 540
Query 535 CCCGTTCTATGAAAAAGTTACTGCTCCAGGTGGGATCAGTTTTGAGGATGGGATTGAGAA 594
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCGTTCTATGATAAAGTTACTGCTCCAGGTGGGATCAGTTTTGAGGATGGGATTGAGAA 600
Query 595 CATTGACATTGGTGGCCCTGCTATGATTAGAGCAGCTGCTAAGAACCACAAAGACGTTCT 654
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 CATCGACATTGGTGGTCCTGCTATGATTAGAGCAGCTGCTAAGAACCACAAAGACGTACT 660
Query 655 CATTGTTGTCGATTCAGGAG-ATTATCAAGCTGTTTTGGAGTATCTCAAAGGAGGACAGA 713
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATTGTTGTCGATTCAG-AGGATTATCAAGCTGTTTTGGAGTATCTCAAAGGAGGACAGA 719
Query 714 GCGACCAACAATTCCGCAGAAAACTTGCGTGGAAGGCCTTTCAGCATGTTGCTGCATATG 773
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 GCGACCAACAATTCCGCAGAAAACTTGCGTGGAAGGCGTTTCAGCATGTTGCTGCATATG 779
Query 774 ATTCTGCGGTTTCAGAATGGCTATGGAAGCAGACTGAAGGAAAAGAGAAGTTCCCTCCCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTCTGCGGTTTCAGAATGGCTATGGAAGCAGACTGAAGGAAAAGAGAAGTTCCCTCCCA 839
Query 834 GCTTTACAGTTCCGCTTGTACTTAAGAGTTCTCTTCGTTACGGTGAAAATCCTCATCAAA 893
|||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 GCTTTACAGTTCCGGTTGAACTTAAGAGCTCTCTTCGTTACGGTGAAAATCCTCATCAAA 899
Query 894 AAGCTGCATTTTATGTTGATAAGAGCCTTGCTGAAGTGAATGCCGGTGGTATCGCAACAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGCTGCATTTTATGTTGATAAGAGCCTTGCTGAAGTGAATGCCGGTGGTATCGCAACAG 959
Query 954 CGATTCAGCATCATGGAAAGGAAATGTCATACAACAACTATCTTGATGCTGACGCTGCAT 1013
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 960 CGATTCAACACCATGGAAAGGAAATGTCATACAACAACTATCTTGATGCTGATGCTGCGT 1019
Query 1014 GGAACTGTGTGTCGGAATTTGAAAACCCAACATGTGTAGTCGTGAAGCATACAAATCCTT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAACTGTGTGTCGGAATTTGAAAACCCAACATGTGTAGTCGTGAAGCATACAAATCCTT 1079
Query 1074 GTGGTGTGGCCTCTCGTGATGATATTCTTGAGGCTTACCGGCTAGCTGTAAAAGCTGACC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTGGTGTGGCCTCTCGTGATGATATTCTTGAGGCTTACCGGCTAGCTGTAAAAGCTGACC 1139
Query 1134 CAGTTAGTGCCTTTGGTGGCATTGTAGCTTTCAATGTTGAAGTTGACGAGGTTCTTGCGA 1193
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAGTTAGCGCCTTTGGTGGCATTGTAGCTTTCAATGTTGAAGTTGACGAGGTTCTTGCGA 1199
Query 1194 GGGAGATCCGAGAGTTCAGGAGCCCAACAGACGGGGAAACTAGAATGTTTTATGAAATCG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGGAGATCCGAGAGTTCAGGAGCCCAACAGACGGGGAAACTAGAATGTTTTATGAAATCG 1259
Query 1254 TGGTTGCTCCAAAGTATACTGCTAAAGGTCTTGAAGTCCTCAAAGGGAAATCAAAAACTT 1313
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGGTAGCTCCAAAGTATACTGCTAAAGGTCTTGAAGTCCTCAAAGGGAAATCAAAAACTT 1319
Query 1314 TGAGGATCCTCGAAGCTAAAAAGAATGACCAAGGGAAACTATCGCTCAGACAGGTTGGTG 1373
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGAGGATCCTTGAAGCTAAAAAGAATGACCAAGGGAAACTATCGCTCAGACAGGTTGGTG 1379
Query 1374 GCGGCTGGTTGGCTCAGGACTCGGACGATTTAACTCCAGAAGACATCAGCTTCAATTCTG 1433
||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||
Sbjct 1380 GCGGCTGGTTGGCTCAGGAGTCGGACGATTTAACTCCAAAAGACATCAGTTTCAATTGTG 1439
Query 1434 TCTCAGACAAAACTCCGACTGAAAGCGAACTTGCGGATGCAAAATTTGCCTGGCTCTGCG 1493
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1440 TGTCAGACAAAACTCCGACTGAAAGTGAACTTGCGGATGCCAAATTTGCCTGGCTCTGCG 1499
Query 1494 TTAAGCATGTCAAGAGCAATGCCATTGTGATAGCAAAGAACAATTGTATGCTGGGGATGG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTAAGCATGTCAAGAGCAATGCCATTGTGATAGCAAAGAACAATTGTATGCTGGGGATGG 1559
Query 1554 GAAGCGGACAGCCAAACCGAGTAGAGAGTCTGAGAATAGCTTTCAAGAAAGCTGGGGAGG 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1560 GAAGCGGACAGCCAAACCGAGTAGAGAGTCTGAGAATAGCTTTCAAGAAAGCTGGCGAGG 1619
Query 1614 AAGCTAAAGGAGCTGCCTTGGCCAGTGACGCATTCTTCCCATTCGCTTGGAAAGATGCGG 1673
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AAGCCAAAGGAGCTGCCTTGGCCAGTGACGCATTCTTCCCATTCGCTTGGAAAGATGCGG 1679
Query 1674 TGGAAGAGGCGTGCCAGATGGGAATAGGAGTGATAGCAGAACCTGGAGGCAGTATTAGAG 1733
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGGAAGAGGCGTGCGAGAAGGGAATAGGAGTGATAGCAGAACCTGGAGGCAGTATTAGAG 1739
Query 1734 ACCAAGACGCTATTGATTGCTGCAAAAAGTATGGAGTCTCTCTGCTCTTCACCAACGTTA 1793
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACCAAGACGCCATTGATTGCTGCAAAAAGTATGGAGTCTCTCTGCTCTTCACCAACGTTA 1799
Query 1794 GACATTTCCGCCATTAAGGACACATCCCTCCAGTTTTGCTCTTATAAACACATCCAAGAG 1853
|||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1800 GACACTTCCGCCATTAAGGACGGGTCCCTCCAGTTTTGCTCTTATAA-CA--TCCAAGAG 1856
Query 1854 AGTTTCTGAAGAAGAAAACCCACCAAA--C-AAA-A---CACAAAGAGTGGGAAATAAAA 1906
||||||||||||||||||||||||| | ||| | |||||||||||||||||||||
Sbjct 1857 --TTTCTGAAGAAGAAAACCCACCAAAGTCCAAACAAAACACAAAGAGTGGGAAATAAAA 1914
Query 1907 CTGTTGTAACATTAATTTGGATTGCGTTCGAGTTT-ATGTATGATTAGAACCTGAGAGCT 1965
|||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1915 ATGTTGTAACATTAATTTGAATTGCGTTCGACTTTTATGTATGATTAGAACCTGAGAGCT 1974
Query 1966 GTTCCTACTTATAAATTTGACATTTTTCACCC 1997
|||||||||||||||||||||| |||||||||
Sbjct 1975 GTTCCTACTTATAAATTTGACACTTTTCACCC 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75075872895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5