BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35050.1
Length=4346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482471 jgi|Araly1|482471|fgenesh2_kg.4__1531__AT2G35050.1 6493 0.0
Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1 577 3e-163
Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1 532 6e-150
> Ahg482471 jgi|Araly1|482471|fgenesh2_kg.4__1531__AT2G35050.1
Length=4004
Score = 6493 bits (3516), Expect = 0.0
Identities = 3858/4022 (96%), Gaps = 27/4022 (1%)
Strand=Plus/Plus
Query 334 ATGGATCAAGCAAAAGGTTATGAACATGTTCGGTATACTGCCCCTGACCCTAGAGATGAG 393
|||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCAAGCAAAGGGTTATGAACACATGCGGTATACTGCCCCTGACCCTAGAGATGAG 60
Query 394 GGACTTGGCTCCATTAATCAAAGGTTTTCCCACGACTCTTCAACTAATGTTAACACTTAT 453
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 61 GGGCTTGGCTCCATTAATCAAAGGTTTTCCCACGACTCTTCAACTATTATTAACACTAAT 120
Query 454 GTACGACCTCCAGATTATGGTGTTTCAACCCCTGCTCGGCCAGTGCTAAACTACTCAATA 513
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTACGACCTCCAGATTATGGTATTTCAACCCCTGCTCGGCCAGTGCTAAACTACTCAATA 180
Query 514 CAGACCGGTGAAGAATTTGCTTTTGAGTTTATGAGAGATAGGGTTATTATGAAACCGCAG 573
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 CAGACCGGTGAAGAATTTGCTTTTGAGTTTATGAGAGATAGGGTAATTATGAAGCCGCAA 240
Query 574 TTCATCCCAAATGTGTATGGTGAGCACAGTGGTATGCCTGTTTCTGTTAACTTAAGTGCT 633
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATCCCAAATCTGTATGGTGAGCCCAGTGGTATGCCTGTTTCTGTTAACTTAAGTGCT 300
Query 634 CTGGGAATGGTTCATCCAATGTCAGAGAGTGGCCCTAACGCTACAGTGCTTAACATAGAA 693
|||||||||||||||| ||||||||||||||| ||||||| ||||| | || ||||
Sbjct 301 ATGGGAATGGTTCATCCGATGTCAGAGAGTGGCTCTAACGCCACAGT-C---AC--AGAA 354
Query 694 GAAAAACGTCAGAGCTTTGAGCACGAGAGGAAACCCCCTTCTAGAATTGAAGATAAGACC 753
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 355 GAAAAACGTCAGACCTTTGAGCAAGAAAGGAAACCCCCTTCTAGAATTGAAGATAAGACC 414
Query 754 TATCATGAACTGGTCCAGTCAGCCCCAGTTATCTCTTCGAAAAATGATACTGGTCAAAGG 813
|||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct 415 TATCATGAGCTGGTCCAGTCAGCCCCAGTTATCTCTTCGAGAAATGATACTAGTCAGAGG 474
Query 814 CGTCATAGTTTGGTTTCTTCTAGAGCTTCTGATAGCTCTTTGAACCGTGCGAAGTTCTTG 873
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 475 CGTCATAGTTTGGTTTCTTCTAGAACTTCTGATAGCTCTTTGAACCATGCGAAGTTCTTG 534
Query 874 TGTAGTTTTGGTGGTAAAGTTATACCCCGCCCCAGAGATCAGAAACTTAGGTATGTAGGT 933
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 535 TGTAGTTTTGGTGGTAAAATTATTCCCCGCCCCAGAGATCAGAAACTTAGATATGTAGGT 594
Query 934 GGTGAAACGCGTATCATACGGATTAGCAAGACTATTTCTTTCCAAGAACTCATGCATAAA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTGAAACGCGTATCATACGGATTAGCAAGACTATTTCTTTCCAAGAACTCATGCATAAA 654
Query 994 ATGAAAGAAATATTTCCTGAAGCACGCACCATAAAATATCAGCTGCCAGGAGAGGATCTT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATGAAAGAAATATTTCCTGAAGCACGCACCATAAAATATCAGCTGCCAGGAGAGGATCTT 714
Query 1054 GATGCCCTAGTCTCTGTATCTTCTGACGAGGATTTACAAAACATGATGGAAGAATGTATC 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GATGCCCTAGTCTCTGTATCTTCTGACGAGGATTTACAAAACATGATGGAAGAATGTATT 774
Query 1114 GTGTTTGGTAATGGAGGATCTGAGAAGCCCAGGATGTTCTTGTTTTCAAGCAGTGATATA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTGTTTGGTAATGGAGGATCTGAGAAGCCCAGGATGTTCTTGTTTTCAAGCAGTGATATA 834
Query 1174 GAGGAGGCTCAGTTTGTTATGGAACATGCAGAGGGTGATTCTGAGGTTCAGTATGTTGTT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAGGAGGCTCAGTTTGTTATGGAACATGCAGAGGGTGATTCTGAGGTTCAGTATGTTGTT 894
Query 1234 GCTGTCAATGGGATGGATCTAAGTTCACGGAGAAGTTCCCTTGGATTAAGTCCTCCCGGG 1293
||||||||||||||||||||||||||||| | ||||||| ||||| |||| ||||||||
Sbjct 895 GCTGTCAATGGGATGGATCTAAGTTCACGAAAAAGTTCCATTGGAACAAGTGCTCCCGGG 954
Query 1294 AACAATTTGGATGAACTACTTCATGGGAATTTTGATAGGAAGATCGATCGGGCTG-CTAC 1352
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| | ||
Sbjct 955 AACAATTTGGATGAACTGCTTCATGGGAATTTTGATAAGAAGATCAATCGGGCTGTC-AC 1013
Query 1353 AGAACCAGCAGTGGCTTCGCTTACTCCCTTAGCAGGTAATGAATCTTTACCAGCGAGCCA 1412
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGAACCAGCAGTGGCTTCGGTTGCTCCCTTAGCAGGTAATGAATCTTTACCAGCGAGCCA 1073
Query 1413 AACTTCTCAACCTGTAACAGGATTTTCTACTGGAAATGAGCCATTTTCACAGCCTTATCT 1472
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AACTTCTCAACCTGTAACAGGTTTTTCTACTGGAAATGAGCCATTTTCACAGCCTTATCT 1133
Query 1473 AGGACAACAATTGCAGTTCCCCGGACTTGGTAACCACCAAATTTACACGTCAGGTCACAT 1532
|||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1134 AGGACAGCAATTTCCGTTCCCCGGACTTGGTAACCACCAAATTTACACATCAGGTCACAT 1193
Query 1533 GGCAAGCATAGGCTATATAGATGAGAAGAGGTCTGCTCCTTTACATGTTCAACCACAACC 1592
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1194 GGCAAGCATAGGCTATATATATGAGAAGATGTCTGCTCCTTTACATGTTCAACCACAACC 1253
Query 1593 TCATTATATCCCGTATTCTGTGAATCCTGAAACACCTCTTGAAAGCCTGGTGCCCCACTA 1652
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TCATTATATCCCTTATCCTGTGAATCCTGAAACACCTCTTGAAAGCCTGGTGCCCCACTA 1313
Query 1653 TCCACAAAAACCTGAGCAAGGATTTTTGCGTGAGGAGCAGATCTTTCATGTACAAGATCC 1712
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1314 TCCACAAAAACCTGAGCAAGGAGTTTTGCGTGAGGAGCAGATCTTTCATGTGCAAGATCC 1373
Query 1713 AGAAACTTCATCAAAAGAGGCCAAAATGAGAAGAGATGACTCATTTCAGAAGGTAAATGA 1772
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 AGAAGCTTCATCAAAAGAGGCCAAAATGAGACGAGATGACTCATTTCAGAAGGTAAATGA 1433
Query 1773 TCATCCTA-T--ATCTACTGTCGAGAGCAATCTTTCAGCAAAGGAGCCAAAGATGAGGAG 1829
|| | ||| | |||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1434 TCCTGCTAATGTATCTACTGTCGAAAGCAATCTTTCAGAAAAAGAGCCAAAGATGAGGAG 1493
Query 1830 AGAATCCTCAACCCCAAGGGTCAATGAGTATCCTGTTTCTTCTATGCCTAGTGATTTAAT 1889
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1494 AGAATCCTCAACCCCAAGGGTCAATGAGTATTCTGTTTCTTCTATGCCTAGTGATTTAAT 1553
Query 1890 AGTCCCAGATGACCTCCCGAAGGAAGAAGCTCCAATTGTCACACAAACATCTAGTTCAAC 1949
||| |||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1554 AGTTCCAGATCACCTCCCGAAGGAAGAAGCTCCAATTGCCACACAAACATCCAGTTTAAC 1613
Query 1950 ACCAGATCCAAGTTCTTCAACTCTCTCAGAGAAAAGTCTTAGGAAATCCGAGGACCATGT 2009
||||||||||| |||||| || | | ||||||||||||||| |||||| ||||||||||
Sbjct 1614 ACCAGATCCAAAATCTTCAGCTGTTTTAGAGAAAAGTCTTAGAAAATCCCAGGACCATGT 1673
Query 2010 TGAGAACAATCTGTCAGCAAAGGAGCCAAAGATGAGAAAAGAACACTCCACCACAAGGGT 2069
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGAGAATGATCTGTCAGCAAAGGAGCCAAAGATGAGAAAAGAACACTCCACCACAAGGGT 1733
Query 2070 CAATGAATATTCCGTTTCCTCTGTATCTAGTGATTCTATGGTCCCAGATCAA-GCCCTCA 2128
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1734 CAATGAATATTCCGTTTCCTCTGTATCTAGTGATTCTATGGTCTCAGAT-AATGCCCTCA 1792
Query 2129 AGGAAGAAGCTCCTATTTCCATGAAGATATCCAATTCAACACCAGATCCAAAATCCTTGG 2188
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1793 AGGAAGAAGCTCCTAATTCCATGAAAATATCCAATTCAACACCAGATCCAAAATCCTTTG 1852
Query 2189 TTTATCCAGAAAAAAGTCTTAGAACATCCCAGGAGAAAACGGGTGCCTTCGATACAACAA 2248
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1853 TTTATCCAGAAAAAAGTCTTAGAACATCCCAGGAGAAAACGGGTGCCTTAGAGGCAACAA 1912
Query 2249 ATGAAGGCATGAAAAAGAATCAGGACAATCAATTTTGTCTGCTTGGAGGATTCTCAGTAT 2308
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1913 GTGAAAGCATGAAAAAGAATCAGGAAAATCAATTTTGTCTGCTTGGAGGATTCTCAGCAT 1972
Query 2309 CTGGACATGGTACTTCAAATAATAGTTCATCTAATGTGAGCAATTTCGACCAGCCTGTGA 2368
||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||
Sbjct 1973 CTGGACATGGTACTTCAGATGGTACTTCATCTAATGTGAGCAATGTCGACCAGCCTGTGA 2032
Query 2369 CTCAGCAAAGAGTCTTTCATTCTGAGCGAACTGTACGAGATCCAACAGAAACTAACCGTT 2428
||| |||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 2033 TTCATCAAAGAGTTTTTCATTCTGAGCGCACTCTACGAGATCCAACAGAAACTAGCCGTT 2092
Query 2429 TGTCTAAATCTGATGATTCCCTTGCTTCTCAATTTGTAATGGCTCAAACAACATCAGATG 2488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 TGTCTAAATCTGATGATTCCCTTGCTTCTCAATTTGTAATGGCTCAAACAACATCAGATG 2152
Query 2489 CTTTCCTGCCTATCAGCGAATCATCTGAAACTTCTCATGAAGCAAATATGGAGTCCCAGA 2548
|||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 2153 CTTTCCTGCCTATCAGTGAATCATCTGAAACT------GAAGCAAATATTGAGTCCCAGA 2206
Query 2549 ATGTTCATCCTACTGCGCCAGTAATACCAGCTCCTGATAGCATCTGGACAGCCGAGGGTA 2608
|||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2207 ATGTTCATTCTACTGCACCAGTAAGACCAGCTCCTGAAAGCATCTGGACAGCCGAGGGTA 2266
Query 2609 GTATGTCACAGTCTGaaaaaaaaaaCGTGGAAACTAACACCCCGGAGCATGTAAGTCAGA 2668
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 2267 GTATGTCACAGTCTGAAAAAAGAAACTTGGAAACTAACACCCCGGAGCATGTTAGTCAGA 2326
Query 2669 CAGAGACTTCAGCAAAGGCTGTTCCACAAGGACACAATGAGAAGGGGGATATAGTTGTTG 2728
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2327 CAGAGACTTCAGCAAAGGCTGTTCTACAAGGAAACAATGAGAAGGGGGATATAGTTGTTG 2386
Query 2729 ATATAAATGATAGGTTTCCTCGTGAGTTTCTTGCTGATATATTAAAAACGAAAGAGTCTC 2788
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2387 ATATAAATGATAGGTTTCCTCGTGAGTTTCTTGCTGATATATTGAAAACGAAAGAGTCTA 2446
Query 2789 TGAACTTCCCTGGATTAGGGCCATTGCATGCCGATGGAGCTGGTGTGAGTTTAAATATTC 2848
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2447 TGAACTTCCCTGGATTAGGGCCATTGCATGCCGATGGAGCTGGTGTGAGTTTGAATATTC 2506
Query 2849 AGAATAATGACCCTAAAACTTGGTCGTATTTTCGAAATTTGGCGCAGGATGAGTTTGAGA 2908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 AGAATAATGACCCTAAAACTTGGTCGTATTTTCGAAATTTGGCGCAGGATGAGTTTGAGA 2566
Query 2909 GGAAGGATCTATCCCTTATGGATCAGGACCACCCTGGATTTCCCACTTCCATGACTAACA 2968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 GGAAGGATCTATCCCTTATGGATCAGGACCACCCTGGATTTCCCACTTCCATGACTAACA 2626
Query 2969 CCAACGGAGTTCCTATTGATTATAGCTACCCACCATTGCAGTCTGAGAAAGTTGCCTCAA 3028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2627 CCAACGGAGTTCCTATTGATTATAGCTACCCACCATTGCAGTCTGAGAAAGTTGCCTCAA 2686
Query 3029 GTCAGATACATCCACAAATCCACTTTGATGGAAATATCAAGCCAGATGTGTCTACCATTA 3088
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2687 GTCAGATAAATCCACAAATCCACTTTGATGGAAATATCCAGCCAGATGTGTCTACCATTA 2746
Query 3089 CCATACCTGATTTGAACACAGTAGACACACAAGAAGATTACAGTCAGTCACAAATCAAAG 3148
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 CCATACCTGATCTGAACACAGTAGACACACAAGAAGATTACAGTCAGTCACAAATCAAAG 2806
Query 3149 GTGCTGAAAGCACGGATGCAACTCTGAATGCTGGAGTTCCTCTTATTGACTTTATGGCTG 3208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2807 GTGCTGAAAGCACGGATGCAACTCTGAATGCTGGAGTTCCTCTTATTGACTTTATGGCTG 2866
Query 3209 CGGATAGTGGCATGAGGTCTCTGCAGGTCATTAAAAATGACGACTTGGAAGAACTGAAGG 3268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2867 CGGATAGTGGCATGAGGTCTCTGCAGGTCATTAAAAATGACGACTTGGAAGAACTGAAGG 2926
Query 3269 AATTAGGTTCTGGTACTTTTGGAACTGTTTATCACGGAAAATGGAGGGGTACAGATGTTG 3328
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927 AATTAGGTTCTGGTACCTTTGGAACTGTTTATCACGGAAAATGGAGGGGTACAGATGTTG 2986
Query 3329 CTATCAAGCGAATAAAAAGGAGCTGTTTTATTGGTCGTTCATCTGAACAAGAGAGATTGA 3388
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2987 CTATCAAGCGAATAAAAAGGAGCTGTTTTATCGGTCGTTCATCTGAACAAGAGAGATTGA 3046
Query 3389 CCTCGGAGTTCTGGCATGAAGCAGAAATTCTTTCAAAGCTTCATCATCCAAATGTTATGG 3448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3047 CCTCGGAGTTCTGGCATGAAGCAGAAATTCTTTCAAAGCTTCATCATCCAAATGTTATGG 3106
Query 3449 CATTTTACGGCGTAGTGAAAGATGGACCAGGAGGAACTTTAGCTACAGTGACAGAGTACA 3508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3107 CATTTTACGGCGTAGTGAAAGATGGACCAGGAGGAACTTTAGCTACAGTGACAGAGTACA 3166
Query 3509 TGGTCAATGGATCGCTCAGGCATGTTCTGCTCAGCAACAGGCACCTTGATCGACGTAAGC 3568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3167 TGGTCAATGGATCGCTCAGGCATGTTCTGCTCAGCAACAGGCACCTTGATCGACGTAAGC 3226
Query 3569 GACTTATCATTGCAATGGACGCAGCTTTTGGGATGGAATATTTGCACTCAAAGAGCATAG 3628
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3227 GACTTTTCATTGCAATGGACGCAGCTTTTGGGATGGAATATTTGCACTCAAAGAGCATAG 3286
Query 3629 TGCATTTCGATTTGAAGTGTGATAACTTGCTTGTCAACTTAAAGGATCCCGCCCGTCCCA 3688
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3287 TGCATTTCGATTTGAAATGTGATAACTTGCTTGTCAACTTAAAGGATCCCGCCCGTCCCA 3346
Query 3689 TATGCAAGGTTGGTGATTTTGGTCTGTCAAAGATAAAAAGAAACACTTTGGTCACTGGCG 3748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3347 TATGCAAGGTTGGTGATTTTGGTCTGTCAAAGATAAAAAGAAACACTTTGGTCACTGGCG 3406
Query 3749 GTGTAAGGGGAACCCTCCCTTGGATGGCTCCCGAGCTACTTAGTGGAAGCAGCAGCAAAG 3808
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3407 GTGTAAGGGGAACCCTCCCTTGGATGGCTCCCGAGCTACTTAGTGGCAGCAGCAGCAAAG 3466
Query 3809 TTTCTGAAAAGGTTGATGTGTTCTCTTTCGGAATTGTCTTATGGGAAATTCTTACCGGTG 3868
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3467 TTTCTGAAAAGGTTGATGTGTTCTCTTTCGGAATTGTCTTGTGGGAAATTCTTACCGGTG 3526
Query 3869 AGGAACCCTACGCCAATATGCATTATGGGGCAATAATCGGAGGCATAGTGAACAATACAT 3928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3527 AGGAACCCTACGCCAATATGCATTATGGGGCAATAATCGGAGGCATAGTGAACAATACAT 3586
Query 3929 TGAGACCAACCGTGCCAAACTACTGTGACCCGGAGTGGAGAATGCTGATGGAGCAGTGTT 3988
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3587 TGAGACCAACCGTGCCAAACTACTGTGACCCAGAGTGGAGAATGCTGATGGAGCAGTGTT 3646
Query 3989 GGGCTCCTGACCCATTTGTTCGACCTGCGTTCCCGGAAATAGCCAGACGTCTCCGCACCA 4048
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 3647 GGGCTCCTGACCCATTTGTTCGGCCTGCCTTTCCGGAAATAGCCAGACGTCTCCGCACCA 3706
Query 4049 TGTCCTCCTCTGCGGTCCACACAAAACCACACGCTGTCAACCACCAAATCCACAAGTAA- 4107
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3707 TGTCCTCCTCTGCGGTCCACACAAAACCACACGCCGTCAACCACCAAATCCACAAGTAAA 3766
Query 4108 -TCTATCAATTTATTATTGCTGGTACGTAAATCGTAAAAAA--TGGTTTGTGTATAAAAT 4164
||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 3767 ATCTATTAATTTATCATTGCTGGTACGTATTTCGTAAAAAAAATGGTTTGTGTATAAAAT 3826
Query 4165 ATTTCCTTGCTGCTTCTTTCGGATTTGAGTGCTACAGTTTCAAGGATTGGTGTTGATTTG 4224
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3827 ATATCCTTGCTGCTTCTTTCGGATTTGAGTGCTACAGTTTCAAGAATTGGTGTTGATTTG 3886
Query 4225 TACAAGAAACCCTAAAAGCACATATTGTATAGCCATTTTCATTATCATTGAGTGTAAGTA 4284
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3887 TACAAGAAACTTTAAAAGCACATATTGTATAGCCATTTTCATTATAATTGAGTGTAAGTA 3946
Query 4285 AATTGttttttttGGTACAAAGACTTGGACCTTCTTTCAATAAAATAAGATCAATCTAAT 4344
||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 3947 AATTGGTTTT---GGTACAAAGACTTGGTCCTTCTTTCAATAAAA-AAGATCAATCTAAT 4002
Query 4345 GT 4346
||
Sbjct 4003 GT 4004
> Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1
Length=4196
Score = 577 bits (312), Expect = 3e-163
Identities = 632/786 (80%), Gaps = 23/786 (3%)
Strand=Plus/Plus
Query 3230 TGCAGGTCATTAAAAATGACGA-CTTGGAAGAACTGAAGGA-ATTAGGTTCTGGTACTTT 3287
||||| ||||||| ||||| || ||| || || ||||||| || ||||||||||||||
Sbjct 3105 TGCAGATCATTAAGAATGAAGATCTT-GAGGAGTTGAAGGAGCTT-GGTTCTGGTACTTT 3162
Query 3288 TGGAACTGTTTATCACGGAAAATGGAG-GGGTACAGATGTTGCTATCAAGCGAATAAA-A 3345
|||||| || ||||| || |||||||| || | |||| || ||||||||| | ||||| |
Sbjct 3163 TGGAACGGTGTATCATGGGAAATGGAGAGGAT-CAGACGTCGCTATCAAGAGGATAAAGA 3221
Query 3346 AGGAGCTGTTTTATTGGTCGTTCATCTGAACAAGAGAGATTGACCTCG-GAGTTCTGGCA 3404
| ||| || ||| ||| || ||||| || ||||||||||||| || | || ||||||
Sbjct 3222 A-GAGTTGCTTTGCTGGGCGGTCATCAGAGCAAGAGAGATTGA-CTGGTGAATTCTGGGG 3279
Query 3405 TGAAGCAGAAATTCTTTCAAAGCTTCATCATCCAAATGTTATGGCATTTTACGGCGTAGT 3464
||||| |||||||||||||||||||||||||| || ||| | |||||||| || || ||
Sbjct 3280 GGAAGCTGAAATTCTTTCAAAGCTTCATCATCCGAACGTTGTAGCATTTTATGGTGTTGT 3339
Query 3465 GAAAGATGGACCAGGAGGAACTTTAGCTACAGTGACAGAGTACATGGTCAATGGATCGCT 3524
||||| || || ||||| || || || || ||||||||||||||||| |||| || ||
Sbjct 3340 AAAAGACGGGCCTGGAGGGACCTTGGCGACTGTGACAGAGTACATGGTTGATGGTTCTCT 3399
Query 3525 CAGGCATGTTCTGCT-CAGCA--ACAGGCACCTTGATCGACGTAAGCGACTTATCATTGC 3581
|||||||||||| | | | | ||||||| |||||||| |||||| |||| ||||||||
Sbjct 3400 GAGGCATGTTCTGGTCCGGAAGGACAGGCATCTTGATCGTCGTAAGAGACTAATCATTGC 3459
Query 3582 AATGGACGCAGCTTTTGGGATGGAATATTTGCACT-CAAAGAGCA-TAGTGCATTTCGAT 3639
||||| || || ||||| ||||||||||| |||| |||| | || | || || ||||||
Sbjct 3460 CATGGATGCTGCATTTGGAATGGAATATTTACACTCCAAA-AACACT-GTTCACTTCGAT 3517
Query 3640 TTGAAGTGTGATAACTTGCTTGTCAACTT-AAAGGATCCCGCCCGTCCC-ATATGCAAGG 3697
||||| ||||| || || ||||| ||||| ||| ||||| | || ||| || |||||||
Sbjct 3518 TTGAAATGTGACAATTTACTTGTGAACTTGAAA-GATCCTTCTCG-CCCAATCTGCAAGG 3575
Query 3698 TTGGTGATTTTGGTCTGTCAAAGATAAAAAGAAACACTTTGGTCA-CTGGCGGTGTAAGG 3756
||||||| |||||| ||||||| || || ||||| || ||||| | |||| |||||| |
Sbjct 3576 TTGGTGACTTTGGTTTGTCAAAAATCAAGAGAAATACGTTGGT-ATCTGGTGGTGTACGT 3634
Query 3757 GGAACCCTCCCTTGGATGGCTCCCGAGCTACTTAGTGGAAGCAGCAGCAAAGTTTCTGAA 3816
|||||| | || |||||||| || ||||| || | || |||||||||||||||||||||
Sbjct 3635 GGAACCTTACCATGGATGGCACCAGAGCTTCTAAACGGGAGCAGCAGCAAAGTTTCTGAA 3694
Query 3817 AAGGTTGATGTGTTCTCTTTCGGAATTGTCTTATGGGAAATTCTTACCGGTGAGGAACCC 3876
||||||||||| ||||||||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 3695 AAGGTTGATGTTTTCTCTTTCGGTATCGTTTTGTGGGAGATTCTAACCGGAGAGGAACCA 3754
Query 3877 TACGCCAATATGCATTATGGGGCAATAATCGGAGGCATAGTGAACAATACATTGAGACCA 3936
|| || |||||||| |||||||||||||| || || ||||||||||| ||| ||||||||
Sbjct 3755 TATGCGAATATGCACTATGGGGCAATAATAGGTGGGATAGTGAACAACACACTGAGACCA 3814
Query 3937 ACCGTGCCAAACTACTGTGACCCGGAGTGGAGAATGCTGATGGAGCAGTGTTGGGCTCCT 3996
||| | || || ||||||| || ||||||| || |||||| | |||||||| ||
Sbjct 3815 ACCATACCGGGCTTCTGTGACGATGAATGGAGAACACTAATGGAGGAATGTTGGGCACCA 3874
Query 3997 GACCCA 4002
|||||
Sbjct 3875 AACCCA 3880
> Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1
Length=3643
Score = 532 bits (288), Expect = 6e-150
Identities = 626/788 (79%), Gaps = 27/788 (3%)
Strand=Plus/Plus
Query 3230 TGCAGGTCATTAAAAATGACGACT-TGGAAGAACTGAAGGA-ATTAGGTTCTGGTACTTT 3287
||||| |||||| |||||||| | | || || || ||||| || |||||||| || ||
Sbjct 2564 TGCAGATCATTATGAATGACGA-TCTCGAGGAGCTAAAGGAGCTT-GGTTCTGGCACATT 2621
Query 3288 TGGAACTGTTTATCACGGAAAATGGAG-GGGTACAGATGTTGCTATCAAGCGAATAAA-A 3345
|| || || ||||| || |||||||| || | |||||||||| ||||| | ||||| |
Sbjct 2622 CGGTACAGTGTATCATGGGAAATGGAGAGGAT-CAGATGTTGCCATCAAAAGGATAAAGA 2680
Query 3346 AGGAGCTGTTTTATTGGTCGTTCATCTGAACAAGAGAGATTGACCTCG-GAGTTCT-GGC 3403
| ||| || ||| ||| || |||||||| ||||| ||||| | || | || |||| ||
Sbjct 2681 A-GAGTTGCTTTGCTGGCCGATCATCTGAGCAAGAAAGATT-AACTGGTGAATTCTGGGG 2738
Query 3404 ATGAAGCAGAAATTCTTTCAAAGCTTCATCATCCAAATGTTATGGCATTTTACGGCGTAG 3463
| ||||| |||||||||||||||||||||||||||||||| | |||||||| || || |
Sbjct 2739 A-GAAGCTGAAATTCTTTCAAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTTG 2797
Query 3464 TGAAAGATGGACCAGGAGGAACTTTAGCTACAGTGACAGAGTACATGGTCAATGGATCGC 3523
| |||||||| || || | ||| || ||||| || |||||||||||||| |||| || |
Sbjct 2798 TAAAAGATGGCCCTGGCGCAACATTGGCTACTGTAACAGAGTACATGGTTGATGGTTCTC 2857
Query 3524 TCAGGCATGTTCTGCTCAGCAACAG---G-CACCTTGATCGACGTAAGCGACTTATCATT 3579
| || |||||||| ||||| || || | ||||| ||||| |||||| |||| ||||||
Sbjct 2858 TGAGACATGTTCTACTCAGGAA-AGATAGACACCTGGATCGTCGTAAGAGACTAATCATT 2916
Query 3580 GCAATGGACGCAGCTTTTGGGATGGAATATTTGCACTC-AAAGAGCATAGTGCATTTCGA 3638
|| ||||| || || ||||| ||||||||||||||| | ||| | ||| || || |||||
Sbjct 2917 GCCATGGATGCTGCCTTTGGAATGGAATATTTGCACGCCAAAAA-CATTGTTCACTTCGA 2975
Query 3639 TTTGAAGTGTGATAACTTGCTTGTCAACTT-AAAGGATCCCGCCCGTCCCA-TATGCAAG 3696
|||||| ||||| || || ||||| ||| | |||| |||| | || |||| | ||||||
Sbjct 2976 TTTGAAATGTGACAATTTACTTGTGAACCTCAAAG-ATCCTTCTCG-CCCAATCTGCAAG 3033
Query 3697 GTTGGTGATTTTGGTCTGTCAAAGATAAAAAGAAACACTTTGGTCA-CTGGCGGTGTAAG 3755
||||||||||| ||| ||||||| || |||||||| || ||||| | |||| |||||| |
Sbjct 3034 GTTGGTGATTTCGGTTTGTCAAAAATTAAAAGAAATACATTGGT-ATCTGGTGGTGTACG 3092
Query 3756 GGGAACCCTCCCTTGGATGGCTCCCGAGCTACTTAGTGGAAGCAGCAGCAAAGTTTCTGA 3815
|||||||| || |||||||| || ||||| || | ||| ||||||||||||||||| ||
Sbjct 3093 CGGAACCCTACCATGGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGA 3152
Query 3816 AAAGGTTGATGTGTTCTCTTTCGGAATTGTCTTATGGGAAATTCTTA-CCGGTGAGGAAC 3874
||||| ||||| ||||||||||| || ||||| ||||| ||| ||| |||| |||||||
Sbjct 3153 GAAGGTCGATGTCTTCTCTTTCGGTATAGTCTTGTGGGAGATT-TTAACCGGGGAGGAAC 3211
Query 3875 CCTACGCCAATATGCATTATGGGGCAATAATCGGAGGCATAGTGAACAATACATTGAGAC 3934
| || || |||||||| || || || ||||| || || |||||||| || ||| |||| |
Sbjct 3212 CATATGCTAATATGCACTACGGTGCTATAATAGGTGGGATAGTGAATAACACACTGAGGC 3271
Query 3935 CAACCGTGCCAAACTACTGTGACCCGGAGTGGAGAATGCTGATGGAGCAGTGTTGGGCTC 3994
| ||| | || | |||||||||| |||| ||| |||| | |||||| |||||||||| |
Sbjct 3272 CGACCATACCGAGCTACTGTGACTCGGACTGGCGAATATTAATGGAGGAGTGTTGGGCGC 3331
Query 3995 CTGACCCA 4002
|| |||||
Sbjct 3332 CTAACCCA 3339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164370657787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5