BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35060.2
Length=2642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482472 jgi|Araly1|482472|fgenesh2_kg.4__1532__AT2G35060.2 4257 0.0
Ahg336243 jgi|Araly1|336243|fgenesh1_pg.C_scaffold_1002808 948 0.0
> Ahg482472 jgi|Araly1|482472|fgenesh2_kg.4__1532__AT2G35060.2
Length=2642
Score = 4257 bits (2305), Expect = 0.0
Identities = 2538/2650 (96%), Gaps = 18/2650 (1%)
Strand=Plus/Plus
Query 3 TCAGCTGCAGAGAAAGAGAAGTCAAAACGCAGCTCTCTCTTGCGTTTTCTTCCTTTCTCC 62
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 1 TCAGTTGCAGAGAAAGAGAAGACAAAACGCAGCTCTCTC-TGCGTTTTCTTCCTTTTTCT 59
Query 63 TTTCTCAATTCCCCAGAGAACAACATAACTCTGTAAAAGGGAAACTCTATTTTGTTCTGA 122
|||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||
Sbjct 60 TTTCTCAATTCCCCAGAGAA-ACCATAACTCTGTAAAAAGGAAACTCTTTTTTGTTCTGA 118
Query 123 ATCAAAAGTAGTTTTAAATGGCGGCAAGAGTAGAAGCAGCAACGATGGGTGGTGAGATTG 182
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 ATCGAAAGAAGTTTTAAATGGCTGCAAGAGTAGAAGCAGCAACGATGGGTGGTGAGATTG 178
Query 183 ATGAAGAAGAGAGTGATGAGAGAGGTAGCATGTGGGATTTGGACCAGAAGCTTGATCAAT 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATGAAGAAGAGACTGATGAGAGAGGTAGCATGTGGGATTTGGACCAGAAGCTTGATCAAT 238
Query 243 CCATGGATGAAGAAGCTGGTCGACTTAGAAACATGTACAGAGAAAAGAAATTCTCGGCTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCATGGATGAAGAAGCTGGTCGACTTAGAAACATGTACAGAGAAAAGAAATTCTCGGCTC 298
Query 303 TTCTACTTCTGCAGCTTTCATTTCAGAGTCTTGGTGTTGTTTATGGTGATTTAGGGACAT 362
|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 299 TTCTGCTTCTGCAGCTTTCGTTTCAGAGCCTTGGTGTTGTATATGGAGATTTAGGGACAT 358
Query 363 CTCCTCTATATGTTTTCTACAATACATTTCCTCATGGGATCAAAGATCCAGAAGATATCA 422
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CTCCTCTCTATGTTTTCTACAATACATTTCCTCATGGGATCAAAGATCAAGAAGATATCA 418
Query 423 TTGGAGCTCTATCTCTCATTATTTATTCACTCACACTCATCCCTCTCCTCAAATACGTTT 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 419 TTGGAGCTCTATCTCTCATTATATATTCACTCACACTCATCCCTCTCCTCAAATATGTTT 478
Query 483 TCGTTGTATGTAAAGCAAATGATAATGGTCAAGGTAGTGGGACGTTTGCTTTGTATTCAT 542
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 479 TCGTTGTATGTAAAGCAAACGATAATGGTCAAGGTAGTGGGACTTTTGCTCTGTATTCAT 538
Query 543 TACTCTGTAGACATGCCAAAGTCAAAACAATTCAGAACCAACACCGTACTGATGAAGAGC 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 TACTCTGTAGACATGCCAAAGTGAAAACAATTCAGAACCAACACCGTACTGATGAAGAGC 598
Query 603 TTACTACTTACAGCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACTAAAAGAT 662
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TTACTACTTACAGCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACCAAAAGAT 658
Query 663 GGTTAGAAAAGCGGACATCTAGAAAAACGGCGCTTCTTATTTTAGTTCTTGTTGGTACGT 722
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 659 GGTTAGAAAAGCGGACATCTAGAAAAACCGCGCTTCTTATTTTAGTTCTTGTTGGTACAT 718
Query 723 GTATGGTCATCGGCGATGGTATCCTTACTCCCGCTATTTCTGTTCTCTCAGCTGCTGGTG 782
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 GTATGGTTATCGGCGATGGTATCCTTACTCCCGCCATTTCTGTTCTCTCAGCTGCTGGTG 778
Query 783 GGCTAAGAGTAAACCTTCCTCACATAAGCAATGGTGTTGTTGTTTTTGTTGCTGTTGTGA 842
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 779 GGCTAAGAGTAAACCGTCCTCACATAAGCAATGGTGTTGTTGTTTTGGTCGCTGTTGTGA 838
Query 843 TATTAGTCAGCTTGTTTAGCGTACAGCATTATGGAACAGACCGGGTTGGTTGGCTTTTTG 902
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATTAGTCAGCTTGTTTAGTGTACAGCATTATGGAACAGACCGGGTTGGTTGGCTTTTTG 898
Query 903 CGCCCATTGTTTTCCTCTGGTTTCTCTCTATCGCAAGTATTGGTATGTACAATATCTGGA 962
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 899 CGCCCATTGTTTTTCTCTGGTTTCTCTCTATCGCAAGTATCGGTATCTACAATATCTGGA 958
Query 963 AACATGATACTAGTGTCTTGAAAGCTTTCTCTCCGGTTTATATATATCGGTATTTTAAGA 1022
|||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 959 AACACGACACTAGTGTCTTGAAAGCTTTCTCCCCAGTTTATATATATCGGTATTTTAAAA 1018
Query 1023 GAGGAGGTCGGGATCGTTGGACCTCTCTTGGAGGCATTATGCTTAGTATAACAGGAATCG 1082
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1019 GAGGAGGTCGGGATCGTTGGACCTCTCTTGGAGGTATTATGCTTAGTATAACAGGAATTG 1078
Query 1083 AAGCACTCTTCGCTGATCTATCGCATTTTCCGGTCTCAGCTGTGCAAATCGCTTTTACGG 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1079 AAGCACTCTTCGCTGATCTATCGCATTTTCCGGTCTCAGCTGTGCAAATCGCGTTTACTG 1138
Query 1143 TAATCGTGTTTCCTTGCCTTCTTTTGGCTTATAGTGGACAAGCTGCGTACATTAGGAGGT 1202
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 1139 TAATCGTGTTTCCTTGCCTTCTTTTGGCTTATAGCGGACAAGCTGCTTACATTAGGATAT 1198
Query 1203 ATCCGGATCATGTAGCTGATGCGTTTTACCGTTCCATTCCAGGAAGTGTGTATTGGCCAA 1262
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 ATCCGGATCATGTGGCTGATGCGTTTTACCGTTCCATTCCAGGAAGTGTATATTGGCCAA 1258
Query 1263 TGTTCATTATTGCAACCGCTGCAGCGATTGTGGCGAGCCAAGCTACTATCTCGGCAACAT 1322
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1259 TGTTCATTATTGCAACCGCTGCAGCGATTGTGGCGAGCCAAGCTACGATCTCGGCGACAT 1318
Query 1323 TCTCCTTAGTCAAGCAAGCTCTAGCCCATGGTTGCTTTCCAAGAGTTAAAGTGGTGCATA 1382
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1319 TCTCCTTAGTCAAGCAAGCTCTAGCCCACGGTTGCTTTCCAAGAGTTAAAGTGGTGCATA 1378
Query 1383 CTTCCCGGAAATTCCTCGGTCAGATTTACGTTCCTGACATAAATTGGATCCTAATGATCC 1442
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CTTCCCGGAAATTCCTCGGTCAGATTTACGTTCCTGACATAAATTGGATTCTAATGATCC 1438
Query 1443 TTTGCATTGCTGTCACCGCTGGATTCAAGAACCAGAGTCAGATAGGAAACGCTTATGGGA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTTGCATTGCTGTCACCGCTGGATTCAAGAACCAGAGTCAGATAGGAAACGCTTATGGGA 1498
Query 1503 CTGCAGTTGTGATCGTCATGCTCGTGACAACACTGCTTATGACGCTGATCATGATCCTAG 1562
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1499 CCGCAGTTGTGATCGTCATGCTTGTGACAACACTGCTTATGATGCTGATCATGATCCTAG 1558
Query 1563 TGTGGCGTTGCCATTGGGTTCTGGTTCTCATATTCACCGTGCTCTCACTTGTCGTGGAGT 1622
|||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
Sbjct 1559 TGTGGCGTTGCCATTGGGTTCTTGTTCTCATATTCACCATCCTCTCACTTGTCGTGGAAT 1618
Query 1623 GCACTTATTTCTCGGCCATGCTTTTCAAAATCGACCAAGGTGGTTGGGTACCGCTCGTGA 1682
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1619 GCACCTATTTCTCGGCCATGCTTTTCAAAATCGACCAAGGTGGTTGGGTACCGCTAGTAA 1678
Query 1683 TCGCTGCAGCTTTTCTCCTCATCATGTGGGTATGGCACTACGGAACTTTAAAGAGATATG 1742
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1679 TCGCTGCAGCTTTTCTCCTCATCATGTCGGTATGGCACTACGGAACTTTAAAGAGATACG 1738
Query 1743 AGTTTGAAATGCACTGTAGAGTCTCAATGGCTTGGATCCTCGGTCTGGGTCCTAGCCTTG 1802
||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1739 AGTTTGAGATGCACAGTAGAGTCTCAATGGCTTGGATCCTCGGACTCGGTCCTAGCCTTG 1798
Query 1803 GGCTTGTTCGGGTTCCGGGGGTTGGCCTCGTTTACACTGAACTAGCTAGTGGAGTCCCTC 1862
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1799 GGCTTGTTCGGGTTCCCGGGGTTGGCCTCGTTTACACCGAACTAGCCAGTGGAGTCCCTC 1858
Query 1863 ATATTTTTTCTCATTTCATCACAAACCTACCGGCCATTCACTCAGTTGTGGTGTTCGTAT 1922
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 ACATTTTTTCTCATTTCATCACAAACCTACCAGCCATTCACTCAGTTGTGGTGTTCGTAT 1918
Query 1923 GCGTCAAGAACCTCCCAGTTTACACCGTACCCGAGGAAGAGCGGTTCCTCGTTAAAAGGA 1982
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GCGTCAAGAACCTCCCGGTTTACACCGTACCCGAGGAAGAGCGGTTCCTCGTTAAAAGGA 1978
Query 1983 TTGGTCCAAAAAATTTCCACATGTTCCGTTGCGTCGCAAGGTACGGATACAGAGACTTGC 2042
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1979 TTGGTCCAAAAAACTTCCACATGTTCCGTTGTGTCGCAAGGTACGGATACAGAGACTTGC 2038
Query 2043 ACAAGAAAGATGATGACTTTGAAAAACGCCTCTTTGAGAGCCTCTTCTTGTACGTACGCC 2102
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 2039 ACAAGAAAGATGATGACTTTGAGAAACGTCTCTTTGAGAGCCTCTTCTTGTATGTCCGCC 2098
Query 2103 TTGAATCGATGATGGAAGGAGGCTGTTCGGATTCCGATGACTACAGCATCTGCGGAAGCC 2162
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TTGAATTGATGATGGAAGGAGGCTGTTCGGATTCCGATGACTACAGCATCTGCGGAAGCC 2158
Query 2163 AGCAACAGCTTAAAGACACGCTCGGGAATGGGAATGAGAACGAGAATCTGGCAACGTTTG 2222
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 2159 AGCAACAGCTTAAAGACACACTTGGGAACGGGAATGAGAACGAGAATCTGGCAACGTTTG 2218
Query 2223 ATACATTTGACTCGATAGAGTCAATAACCCCAGTGAAACGGGTGAGCAACACAGTGACAG 2282
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2219 ATACATTTGACTCGATAGAGTCAATAACCCCAGTGAAACGGGTGAGCAACACGGTGACAG 2278
Query 2283 CGTCGAGCCAGATGA---GTGGAGTAGACGAGCTGGAGTTCATAAACGGGTGCAGGGACG 2339
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2279 CGTCGAGCCAGATGAGCGGTGGACTAGACGAGCTGGAGTTCATAAACGGGTGCAGGGACG 2338
Query 2340 CAGGAGTGGTACACATAATGGGGAACACGGTGGTTCGAGCCAGGAGGGAAGCGAGGTTCT 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 CAGGAGTGGTACACATAATGGGGAACACGGTGGTTCGAGCCAGGAGGGAAGCGAGGTTCT 2398
Query 2400 ACAAGAAGATAGCGATTGACTATGTGTATGCATTTCTTAGGAAGATTTGCAGAGAACATA 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 ACAAGAAGATAGCGATTGACTATGTGTATGCATTTCTTAGGAAGATTTGCAGAGAACATA 2458
Query 2460 GTGTTATCTACAATGTTCCTCAAGAGAGCCTTTTGAATGTTGGTCAGATTTTCtatgtat 2519
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2459 GTGCTATCTACAATGTTCCTCAGGAGAGCCTTTTGAATGTTGGTCAGATTTTCTATGTAT 2518
Query 2520 aa---tatat--gtatatgtatgtgtt-gtt-atattctgtttgtatgtaatgtctatga 2572
|| ||||| ||||||| ||||||| ||| |||||| ||||||||||||||||| ||
Sbjct 2519 AAAAATATATATGTATATGCATGTGTTCGTTTATATTCCGTTTGTATGTAATGTCT--GA 2576
Query 2573 tgttgtatagttatatCAAAATTTTGGGTTTGCCAAGTTATTAAACAAACAATGGAATGA 2632
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2577 TGTTGTATAGTTATATCAAAATTTTGGGTTTGCCAAGTTATTAAACAA----TGGAAGGA 2632
Query 2633 CTATTTTATC 2642
||||||||||
Sbjct 2633 CTATTTTATC 2642
> Ahg336243 jgi|Araly1|336243|fgenesh1_pg.C_scaffold_1002808
Length=1905
Score = 948 bits (513), Expect = 0.0
Identities = 788/921 (86%), Gaps = 17/921 (2%)
Strand=Plus/Plus
Query 317 CTTTCATTTCAGAGTCTTGGTGTTGTTTATGGTGATTTAGGG-ACATCTCCTCTATATGT 375
||||| |||||||||||||||||||||||||| ||||| ||| || || ||| |||||||
Sbjct 31 CTTTCGTTTCAGAGTCTTGGTGTTGTTTATGGAGATTT-GGGAACTTCGCCTTTATATGT 89
Query 376 TTTCTACAATACATTTCCTCA-TGGGATCAAAGATCCAGAAGATATCATTGGAGCTCTAT 434
|||||| |||||||||||| | ||||||||||| || |||||||||||||||||| |||
Sbjct 90 TTTCTATAATACATTTCCT-AGAGGGATCAAAGACCCTGAAGATATCATTGGAGCTTTAT 148
Query 435 CTCTCATTATTTATTCACTCACACTCATCCCTCTCCTCAAATACGTTTTCGTTGTATGTA 494
| || || || ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 149 CGCTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAGTATGTTTTCGTTGTATGCA 208
Query 495 AAGCAAATGATAATGGTCAAGGTAGTGGGACGTTTGCTTTGTATTCATTACTCTGTAGAC 554
||||||| |||||||||||| | |||| || |||||| | ||||| || ||||||||||
Sbjct 209 AAGCAAACGATAATGGTCAA-G--GTGGAACATTTGCTCTCTATTCTTTGCTCTGTAGAC 265
Query 555 ATGCCAAAGTCAAAACAATTCAGAACCAACACCGTACTGATGAAGAGCTTACTACTTACA 614
|||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 266 ATGCAAAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATA 325
Query 615 GCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACTAAAAGATGGTTAGA-AAAG 673
|||| ||||| || ||||||||||| |||||||| || || || |||||||| || ||||
Sbjct 326 GCCGTACTACATTTCATGAGCATTCTTTTGCTGCAAAAACCAAGAGATGGTTGGAGAAAG 385
Query 674 CGGA-CATCTAG-AAAAACGGCGCTTCTTATTTTAGTTCTTGTTGGTACGTGTATGGTCA 731
| | | ||||| ||||| | |||| |||||| | ||||| || |||||||| ||||| |
Sbjct 386 -GTATC-TCTAGGAAAAATG-CGCTACTTATTCTCGTTCTAGTCGGTACGTGCATGGTGA 442
Query 732 TCGGCGATGGTATCCTTACTCCCGCTATTTCTGTTCTCTCAGCTGCTGGTGGGCTAAGAG 791
| |||||||| ||||||||||| || ||||| ||||| || ||||| |||||||| || |
Sbjct 443 TTGGCGATGGAATCCTTACTCCTGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGG 502
Query 792 TAAACCTTCCTCACATAAGCAATGGTGTTGTTGTTTTTGTTGCTGTTGTGATATTAGTCA 851
|||||||||||||||||| |||||| |||||||| |||| || |||||||||||||| |
Sbjct 503 TAAACCTTCCTCACATAAATAATGGTATTGTTGTTGTTGTGGCAGTTGTGATATTAGTGA 562
Query 852 GCTTGTTTAGCGTACAGCATTATGGAACAGACCGGGTTGGTTGGCTTTTTGCGCCCATTG 911
|||||||||| ||||| ||||||||||||||| | || || |||||||| ||||||||||
Sbjct 563 GCTTGTTTAGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTG 622
Query 912 T-TTTCCTCTGGTTTCTCTCTATCGCAAGTATTGGTATGTACAATATCTGGAAACATGAT 970
| |||| |||||||||||| ||| |||||||| ||||||| |||||| |||||||||||
Sbjct 623 TATTTC-TCTGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGAC 681
Query 971 ACTAGTGTCTTGAAAGCTTTCTCTCCGGTTTATATATATCGGTATTTTAAGA-GAGGAGG 1029
| || || ||||||||||| || ||||||||||||||||| |||||||| | |||||||
Sbjct 682 CCAAGCGTTTTGAAAGCTTTTTCCCCGGTTTATATATATCGATATTTTAA-ACGAGGAGG 740
Query 1030 TCGGGATCGTTGGACCTCTCTTGGAGGCATTATGCTTAGTATAACAGGAATCGAAGCACT 1089
| ||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 741 CCAAGATCGCTGGACCTCACTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCT 800
Query 1090 CTTCGCTGATCTATCGCATTTTCCGGTCTCAGCTGTGCAAATCGCTTTTACGGTAATCGT 1149
||| || |||||||| |||||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct 801 CTTTGCGGATCTATCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGT 860
Query 1150 GTTTCCTTGCCTTCTTTTGGCTTATAGTGGACAAGCTGCGTACATTAGGAGGTATCCGGA 1209
||||||||||| |||||||| ||||| ||||||||||| ||| |||| | ||| ||| |
Sbjct 861 CTTTCCTTGCCTCCTTTTGGCGTATAGCGGACAAGCTGCATACCTTAGAAAGTACCCGCA 920
Query 1210 TCATGTAGCTGATGCGTTTTA 1230
|||||| | || ||||||||
Sbjct 921 TCATGTGGAAGACGCGTTTTA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99644080920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5