BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35075.1

Length=1548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931346 jgi|Araly1|931346|scaffold_303803.1                        178    1e-43


> Ahg931346 jgi|Araly1|931346|scaffold_303803.1
Length=11422

 Score =  178 bits (96),  Expect = 1e-43
 Identities = 122/135 (90%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  752   GGGATGTGTGGCGTTTATTGGATAGTATTGCTGTGTCTTTGGCTTCTCAACAAAAGAAGT  811
             |||| |||||||||| ||| |||||||| |||| ||||||||||||||| ||||||||||
Sbjct  5854  GGGAAGTGTGGCGTTCATTTGATAGTATCGCTGCGTCTTTGGCTTCTCATCAAAAGAAGT  5913

Query  812   CATCAGTATCTTTAAAGGAAGTTTCTCCTAGTTTGTCTTGGTTATCATCCTGTAACATTC  871
             ||||| ||||||||||||||||| |||| ||| ||||||  |||||||||||||||||||
Sbjct  5914  CATCAATATCTTTAAAGGAAGTTGCTCCGAGTATGTCTTTCTTATCATCCTGTAACATTC  5973

Query  872   CAATGCCTGGTCTGG  886
             ||||||||||| |||
Sbjct  5974  CAATGCCTGGTTTGG  5988



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57973352890


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5