BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35090.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321223 jgi|Araly1|321223|fgenesh1_pm.C_scaffold_4001280           385    2e-106


> Ahg321223 jgi|Araly1|321223|fgenesh1_pm.C_scaffold_4001280
Length=471

 Score =  385 bits (208),  Expect = 2e-106
 Identities = 302/343 (88%), Gaps = 24/343 (7%)
 Strand=Plus/Plus

Query  17   ATGGCAATGCTTAAGCGCACGATTAGTATCGTAAGAACCGGAAGAGGTCTGAGTTATCGT  76
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGCAATGCTTAAGCGCACGATTAGCATCGTAAGAACCGGAGGAGGTCTGAGTTATCGT  60

Query  77   TCACTTTCTTCCGGGAACCATGTCGACAAATTAGGAATGGTTAAGGCTCTAGAGGCGATC  136
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct  61   TCACTTTCTTCCGGGAACCATGTCGACACATTAGGAATGGTTAAGGCTCTAGAGGCTATC  120

Query  137  AACGTACCCTCAACACAAGCGGAGGCATTAACCGGCGCCATCACCAGTGGCTTGGAGTCG  196
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  121  AACGTACCCTCGACACAAGCGGAGGCATTAACCGGCGCCATCACCGGTGGCTTTGAGTCG  180

Query  197  GTGGTGGAGAAGGTGAAAGCCGACATCGCCAAATCCGAGG-AA-TAT-C------AA--T  245
            ||| ||||||| |||||||| |||| |||||||||||||| || | | |      ||  |
Sbjct  181  GTGATGGAGAAAGTGAAAGCTGACAACGCCAAATCCGAGGCAAATCTTCTTTTCCAAACT  240

Query  246  --C-A--A-C--T-A----GTGTTGCAGAAGAGGTTCGAAAAATGCGAGCCGATATTAAT  292
              | |  | |  | |    ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct  241  TTCGAGTATCAATCAACTCGTGTTGCAGAAGAGGTTAGAAAACTGCGAGCCGATATTGAT  300

Query  293  AAGGTGCGAGCGGATATTGCTACAATGCAAGCAGAGAAGAGGT  335
            ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  301  AAGATGCGAGCGGATATTGCTACAATGCAAGCCGAGAAGAGGT  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5