BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35100.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1 2669 0.0
> Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1
Length=1741
Score = 2669 bits (1445), Expect = 0.0
Identities = 1655/1755 (94%), Gaps = 20/1755 (1%)
Strand=Plus/Plus
Query 2 TCATTAGTGAGCTAAGTTGTTCAATCTCTCACCTGAAAACCCTAACCTTCTTCTTCAATC 61
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1 TCATTAGTGAGCTAAGTTGTTCAATCTCTCACCTGAAAACCCTAA-C--CTTCTTCAACC 57
Query 62 TCCAATGGCGCGTAAATCTTCCCTCCTCAAACGAGCAGCAATCGCCGTCGTCTCCGTCAT 121
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 58 TCCAATGGCGCGTAGATCTTCCCTCCTTAAACGAGCAGCAATCGCCGTCGTATCCGTCAT 117
Query 122 CGCCATCTATGTAATTCTCAACGCCTCCGTTAGTCGCTCTCTCCCTTCCTCATCCGATCT 181
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 118 CGCCATCTATGTAATTCTCAACGCCTCCGTCAGTCGTTCCCTCCCTTCCTCATCCGATCT 177
Query 182 CCCTCGCCAGCTAATCCGTGAAGATGATGATGATGAAGGACGTGCTCCGATTCAGCCTAG 241
|||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||
Sbjct 178 CCCTCGCCAGCTAATCCGTG-A-A-GACGATGATGAAGGACGTGCTCCGATTCAGCCTAG 234
Query 242 GGTTAGGGTTTACATGTACAATCTCCCCAAGAGATTCACTTACGGTTTAATCGAGCAGCA 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GGTTAGGGTTTACATGTATAATCTCCCCAAGAGATTCACTTACGGTTTAATCGAGCAGCA 294
Query 302 CTCAATCGCTCGCGGCGGAATCAAGAAGCCCGTCGGTGACGTCACCACGCTTAAGTATCC 361
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 295 CTCAATCGCTCGCGGTGGAATCAAGAAGCCCGTCGATGACGTCACTACGCTTAAGTATCC 354
Query 362 GGGTCATCAACATATGCACGAGTGGTATCTTTTCTCGGATCTTAATCAACCCGAAGTTGA 421
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 355 GGGTCATCAGCATATGCACGAGTGGTATCTTTTCTCGGATCTTAATCGACCCGAAGTGGA 414
Query 422 TCGATCCGGGTCTCCGATTGTCCGTGTCTCGGATCCTGCCGACGCTGATCTCTTCTACGT 481
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 415 TCGATCCGGGTCTCCGATTGTCCGTGTCTTGGATCCTGACGACGCTGATCTCTTCTACGT 474
Query 482 CCCTGTGTTCTCTTCACTCAGCTTAATTGTAAATGCGGGTCGACCCGTTGAAGCTGGATC 541
||| ||||||||||| |||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 475 CCCGGTGTTCTCTTCTCTCAGCTTAATTGTGAATGCGGGTCGACCTGTTGAACCTGGATC 534
Query 542 CGGTTACAGCGATGAGAAGATGCAGGAAGGGTTGGTGGAGTGGCTTGAAGGTCAAGAGTG 601
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 535 CGGTTACAGCGACGAGAAGATGCAGGAAGGGTTGATGGAGTGGCTTGAAGGTCAAGAGTG 594
Query 602 GTGGAGGAGGAATGCTGGGAGAGATCACGTGATACCCGCAGGCGATCCGAATGCGTTGTA 661
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 GTGGAGGAGGAATGGTGGGAGAGATCACGTGATACCCGCCGGCGATCCGAATGCGTTGTA 654
Query 662 TCGGATCTTGGATCGGGTCAAAAACGCAGTTCTGCTGGTTTCGGATTTCGGGCGGTTGAG 721
|||||||||||| |||||||| || | |||||||| || |||||||||||||||||||
Sbjct 655 TCGGATCTTGGACCGGGTCAAGAATTCGGTTCTGCTCGTGGCGGATTTCGGGCGGTTGAG 714
Query 722 GCCTGATCAAGGATCGTTCGTCAAGGATGTTGTAATACCTTACTCCCATAGAGTCAATCT 781
|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 715 GCATGATCAAGGATCGTTCGTCAAGGATGTGGTAATACCTTACTCTCATAGAGTCAATCT 774
Query 782 CTTCAATGGAGAAATTGGAGTTG-AGGATCGCAACACATTACTCTTCTTCATGGGAAATC 840
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 775 CTTCAATGGAGAAATTGGAG-TGCAGGATCGCAACACATTACTCTTCTTCATGGGAAATC 833
Query 841 GATATCGCAAAGATGGTGGAAAAGTTCGTGATTTGCTGTTCCAAGTACTTGAAAAGGAAG 900
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 834 GATATCGCAAAGATGGTGGAAAAGTTCGTGATTTGCTTTTCCAAGTTCTTGAAAAGGAAG 893
Query 901 ATGATGTAACAATAAAACATGGAACTCAGTCCAGAGAGAATCGACGAGCTGCTACGAAAG 960
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 894 ATGATGTAACAATAAAACATGGAACTCAATCCAGAGAGAACCGACGAGCTGCTACGAAAG 953
Query 961 GAATGCATACTTCGAAGTTTTGTTTAAATCCTGCGGGTGACACTCCATCCGCCTGCAGAC 1020
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 954 GAATGCATACTTCAAAGTTTTGTTTAAATCCTGCGGGTGACACTCCATCTGCCTGCAGAC 1013
Query 1021 TCTTTGACTCCATTGTCAGTTTGTGTGTGCCCCTGATTGTTAGCGATAGTATCGAGTTAC 1080
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1014 TCTTTGACTCCATTGTCAGTTTGTGTGTGCCCGTGATTGTTAGCGATAACATCGAGTTAC 1073
Query 1081 CTTTCGAAGATGTTATAGATTATAGAAAGTTTTCCATTTTTGTTGAGGCCAATGCAGCTC 1140
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 CTTTCGAAGATGTTATAGATTATAGAAAGTTTTCGATTTTTGTTGAGGCCAATGCAGCTC 1133
Query 1141 TGCAGCCTGGATTTCTGGTTCAGATGCTGAGGAAAATAAAAACCAAGAAGATCCTCGAGT 1200
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1134 TGCAGCCCGGTTTTCTGGTGCAGATGCTGAGGAAAATTAAAACCAAGAAGATCCTGGAGT 1193
Query 1201 ATCAGAGAGAAATGAAATCGGTAAGACGGTATTTTGACTATGACAACCCAAATGGAGCAG 1260
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 ATCAGAGAGAGATGCAATCGGTAAGACGGTATTTTGACTATGACAACCCAAATGGAGCAG 1253
Query 1261 TGAAGGAAATCTGGCGTCAAGTCTCCCACAAGTTACCACTCATCAAACTAATGAGTAACC 1320
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1254 TGAAGGAAATCTGGCGTCAAGTCTCGCAGAAGTTACCACTCATCAAACTAATGAGTAACC 1313
Query 1321 GTGACAGGCGCCTCGTCCTAAGAAATTTGACCGAACCAAACTGCTCATGTCTATGCACAA 1380
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCGACAGACGCCTCGTCCTAAGAAATTTGACCGAACCAAACTGCTCATGTCTATGCACAA 1373
Query 1381 ACCAAACCGGTCTTATCACTTCCATTTAAACAATCTCTTTGTCTTTTGGGAGAGACCTTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ACCAAACCGGTCTTATCACTTCCATTTAAACAATCTCTTTGTCTTTTGGGAGAGACCTTT 1433
Query 1441 TGGACTGTGGAGGAGCTTGAG-AAGGA-GAGAGTTCACCGAGACTTACACAAGCAGATAT 1498
|||||||||||||||||||| || | || |||||||||| ||||||||||||||
Sbjct 1434 TGGACTGTGGAGGAGCTTGAACAACTTTGTGAC--CACCGAGACTCACACAAGCAGATAT 1491
Query 1499 TCCCCCCTCCCGTGGCATAACTACTTCTCCGGTAAGCAAACTGAGAGCACATGCATGGTG 1558
| || |||| |||||||||| | |||||||||| |||||||||||||| |||||| |
Sbjct 1492 GCGCC--TCCCTTGGCATAACT--T-CTCCGGTAAGGAAACTGAGAGCACACGCATGGCG 1546
Query 1559 ACAGATTCATAAGGAAGATATATTTGAAATCCTTCTTCTTCTGTAGATTCCATTAGTTTT 1618
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1547 ACAGATTCATAAGGAAGAAATATTTGAAATCATTCTTCTTCTGTAGATTCCATTAGTTTT 1606
Query 1619 ATTGTTCTCGATAGTGTTACAATTTATACGGACCCAACTGCCATTCTTTTCTACTCTGTT 1678
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1607 ATTGTTCTTGATAGTGTTACATTTTATACGGACCCAACTGCCATTCTTTTTTACTCTGTT 1666
Query 1679 ACT---GTACATGTCATAAAAGCGAAGCACAACACAAAGCTTGAATTAATTTTGCCAATA 1735
||| |||||||||||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 1667 ACTACTGTACATGTCATAAAAGCGAAACACAACACAAAGCTTGAATTAGTTCTGCGAATA 1726
Query 1736 TTTAGAAAATATCAT 1750
|||||||||||||||
Sbjct 1727 TTTAGAAAATATCAT 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5