BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35120.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482477 jgi|Araly1|482477|fgenesh2_kg.4__1537__AT2G35120.1 1136 0.0
> Ahg482477 jgi|Araly1|482477|fgenesh2_kg.4__1537__AT2G35120.1
Length=826
Score = 1136 bits (615), Expect = 0.0
Identities = 767/835 (92%), Gaps = 32/835 (4%)
Strand=Plus/Plus
Query 1 GTCGTAAGAATATAATAATAAGCCGTTCGGTGAGTGCA--CTCTTTCTCTCTCACTGTTG 58
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct 1 GTCGTAAGAATATAATAATAAGCCGTTCGGTGAGTGCACTCTCTTTGTCTCTCAC---TG 57
Query 59 TTGTTGTGTATCTGTGCGA-----GATCTCTCCAACGAAAAAATGGCTTGTAGACTCTTT 113
||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 58 TTGTTGTGTATCTGTGCGACGTGCGAGATCTCCAACGAAAAAATGGCTTGTAGACTCTTG 117
Query 114 TGGGCTTCTAGGGTTGCTTCTCATCTAAGGATCTCCGTTGCTCAACGAGGGTTTTCTTCC 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGGGCTTCTAGGGTTGCTTCTCATCTAAGGATCTCCGTTGCTCAACGAGGGTTTTCTTCG 177
Query 174 GTGGTTTTGAAGGATTTGAAATATGCTGATTCACATGAATGGGTGAAGATTGACGGGAAT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 GTGGTTTTGAAGGATTTGAAATATGCTGATTCACATGAATGGGTGAAGATTGATGGGAAT 237
Query 234 AAAGCAACCTTTGGTATAACGGATCACGCGCAGGACCATTTAGGAGATGTGGTCTATGTG 293
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 AAAGCAACCTTTGGTATAACGGATCACGCACAGGACCATTTAGGAGATGTGGTCTATGTG 297
Query 294 GAGTTACCTGATGTAGGACATTCGGTGTCACAAGGGAAGAGTTTTGGAGCAGTTGAAAGT 353
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 298 GAGTTACCTGATGTGGGACATTCGGTGTCACAAGGGAAGAGTTTTGGAGCGGTCGAAAGT 357
Query 354 GTGAAAGCAACTAGCGATATCAATTCTCCAGTCTCGGGTAAGGTGGTTGAAGTCAATGAG 413
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 GTGAAAGCGACTAGCGATATCAATTCTCCAGTCTCGGGTACGGTGGTTGAAGTCAATGAG 417
Query 414 GAGCTGACCGAGTCCCCTGGATTGGTGAACTCTAGCCCGTATGAACAAGGATGGATCATA 473
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 GAGCTGACCGAGTCCCCTGGATTGGTGAACTCTAGCCCGTATGAACAAGGTTGGATCATA 477
Query 474 AAAGTTGAGCTGAGTGATGCAGGCGAGGCAGAGAAGCTGATGGATTCAGACAAGTACTCT 533
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAGTTGAATTGAGTGATGCAGGCGAGGCAGAGAAGCTGATGGATTCAGACAAGTACTCT 537
Query 534 AAGTTCTGCGAAGAAGAAGACGCCAAGCACTGAGCTTTTTC-T-------AT-T-TTTTC 583
|||||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 538 AAGTTCTGCGAAGAAGAAGACGCCAAGCACTGAGCTTTTTAATGTTTTTTATATATTTTC 597
Query 584 CAGCATCCTTCTCCAAGCTTCCACCGCAACACAGATTGTTGTTTTCTCAATCGAGGATCA 643
||| | ||||||| | | || || |||||||||||||||||||||||||||||||||||
Sbjct 598 CAG-ACCCTTCTCGACGTTTATACTGCAACACAGATTGTTGTTTTCTCAATCGAGGATCA 656
Query 644 AAACGAGATTTCTCCATCTTTGTCCCTTGGACTGAAAATTCCCATCTCTCGTTCTCCttt 703
|||||||||| |||||||| |||| |||||| ||||||||| ||||||||||||||||
Sbjct 657 AAACGAGATT-CTCCATCT--GTCCATTGGACCGAAAATTCCTATCTCTCGTTCTCCTTC 713
Query 704 tttcttttcatgtttttcttttAATG-----AAATGAAATTGTTTGAATAATGGTAGAGA 758
|||||||| |||||||| |||| | |||| |||||||||||||||||||||| |
Sbjct 714 TTTCTTTTTATGTTTTTTTTTTTTTTTTTTTAAATTAAATTGTTTGAATAATGGTAGAAA 773
Query 759 ATAATGAGCTTTGGCGTTGAA-ATTGATTGGATCTTTCATGGAGTTATGCCTTTT 812
||||| |||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 774 ATAATAAGCTTTGG-GAT-AACATTGATTGGATCTTTCATGGAGTTATGCCTTTT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5