BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35140.1
Length=2724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482479 jgi|Araly1|482479|fgenesh2_kg.4__1539__AT2G35140.1 3498 0.0
> Ahg482479 jgi|Araly1|482479|fgenesh2_kg.4__1539__AT2G35140.1
Length=2775
Score = 3498 bits (1894), Expect = 0.0
Identities = 2508/2793 (90%), Gaps = 87/2793 (3%)
Strand=Plus/Plus
Query 1 CGATCTTTGCGTTTAATATCTATATC-CTCCTCCGATCTTCGTCCCCCTCCTTCGCCGTT 59
|||||| |||||||||||||| | | || ||||||||||| ||| || ||||||||
Sbjct 1 CGATCTCTGCGTTTAATATCTCTCGCTATCTTCCGATCTTCG---CCC-CCATCGCCGTT 56
Query 60 TCGTTTTCCGTTTTCTGTAACAGCAATGCCTAAAA--ATCGGAGGATGATGGAGGAATTT 117
|||||||||||||||||||||||| ||||| |||| || | || || |||||| || ||
Sbjct 57 TCGTTTTCCGTTTTCTGTAACAGCCATGCCAAAAAGGAT-GAAGCAT-ATGGAGAAAGTT 114
Query 118 AATGGTGCTTCTTCTGGAGGAGAGCCGGAGTATGGTGCTATTTTCATGTCCAATAACTCA 177
||||||| ||||||||| ||| || || |||||||| |||||||||||||||||||||
Sbjct 115 AATGGTG---CTTCTGGAGAAGATCCAGAATATGGTGCCATTTTCATGTCCAATAACTCA 171
Query 178 ACCAGGAAGGAATGCCTTAGCCGAAAGCTTTTCGGTTTGCCAATTGGGCTAGGAGGATTT 237
|||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||
Sbjct 172 ACCAGGAAGGAATGCCTTAGCCGAGGGCTTTTCGGTTTGCCGATTGGGCTTGCCGGATTT 231
Query 238 GTTAAACATGTTAAAGCTGGAATGATGTTGTTTTTGTTTGAATTCGAGAAGAGAGAGCTA 297
|||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 232 GTTAAACAGGTCAAAGCTGGAATGATGCTCTTTTTGTTTGAATTCGAGAAGAGAGAGCTA 291
Query 298 CATGGTGTGTTTCAGGCTTGCTCTGATGGTGCAATAAACATTGAGCCTAATGCTTTCCGC 357
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 292 CATGGTGTGTTTCAGGCTTGCTCTGATGGTGCAATAAACATCGAGCCCAATGCATTCCAA 351
Query 358 TCTTCTGGGAAACAGTTTCCTGCTCAGGTCAAGTTTACTGAGAAGTGGCGTTGTAGGCCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCTTCTGGGAAACAGTTTCCTGCTCAGGTCAAGTTTACTGAGAAGTGGCGTTGTAGGCCA 411
Query 418 CTTTGTGAAAGTGAGTTTGGTAATGCTATCCATGAAAATTACTTCACACCAACAAAGTTT 477
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 412 CTTTGTGAAAGTGAGTTTGGTAATGCTATCCATGAAAATTACTTCACATCAAAAAAGTTC 471
Query 478 AATTTTGGACTCTCCAAGGCTCAGGTTCAAAGGCTATTGAAGTTGTTTAGCATGAAGAAG 537
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 472 AAATTTGGACTCTCCAAGGCTCAGGTTCAAAGGCTATTGAAGTTGTTTTGCTTGAAGAAG 531
Query 538 GTAGAGAGATCACGACTGAGAGAAACTGCAGCTCCGAAACC-GTTAAGGAAATCTGAAAA 596
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 532 GTAGAGAGATCACGACTGATAGAAACTGCAGCTCCGAAACCATTTAA-AAAATCTGAAAA 590
Query 597 TACAGTTGGTGATCGTGGCTTTAGGAATCGTTG-TGCAGGAGAAATGGATGAAGATGTTG 655
| ||||||||||||||| ||| ||||||| | ||||| ||||| ||||| ||||||||
Sbjct 591 TGTAGTTGGTGATCGTGGTTTTGGGAATCG-CGATGCAGAAGAAACGGATGGAGATGTTG 649
Query 656 ACCGTGAGTTTCCCTTCAGAGTTACACCTTCAGGAGATCATCGAGGTCGTAGGTTAACAG 715
|||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||| ||
Sbjct 650 ACCGTGAGTTTCCCATCAGAGTTACATCTGCAGGAGATCATCGTGGTCGTAGGTTAATAG 709
Query 716 AGAATTATGGTTTTGGGGAGGAATC----T-GA-TAGTGGACTAGAGTATGATCCAACTA 769
|||||||||||| ||||| |||||| | || |||||| |||||||||||||||||||
Sbjct 710 AGAATTATGGTTGTGGGGGGGAATCTAAATGGACTAGTGGCCTAGAGTATGATCCAACTA 769
Query 770 AAGGGAATGAGTACTCCAGACTTGTTGATCCCAAACTGCATGGGTTGAAGGATAGATTAC 829
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 770 AAGGGAATGAGTACTCCAGACTCGTTGATTCCAAACTCCATGGGTTGAAGGATAGATTAG 829
Query 830 GATGTAAGGTTACCATGAATAAT-A-A-CTTTGGCACAGATGCTTCAACTAAGAATTCGT 886
||||| |||||| |||||||||| | | ||||||||| ||||||| ||||||||||||||
Sbjct 830 GATGTGAGGTTAGCATGAATAATAATAGCTTTGGCACTGATGCTTTAACTAAGAATTCGT 889
Query 887 ATAATTCTCTAGTTAATGATCGAAAAGTCCCGAAGAACTTGAGACACGCTGCAAATGGAT 946
|||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |
Sbjct 890 ATAATTCTCTAGTTAACGATCGAAGAGTCCCGAAGAACTTGAGACACACTGCAAATGGCT 949
Query 947 GGTTAGAAAGTGAGTACCATGAAAAAGATGGTATCGCACAGGCAAGTTTGTGGTCTAACA 1006
||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 950 GGTTAGAAAATGATTACCATGAAAAAGATGGTATCGCACAGGCAAGTTCGTGGTCTAACA 1009
Query 1007 ACAAGGAACGCCTTAATTTTGAGTCAGATCCAGTGGTTCCTGCTCAAAGCTCAGTACCTC 1066
||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||
Sbjct 1010 ACAAGGAACGCCTTAATTTTGAGGCAGATCCAATGGTTCCCACTCAAAGCTCAGTATCTC 1069
Query 1067 CAGACTTACCATATGAAACAAACACAGGATACTATGACCCTGATCATCCCAGCATCATGG 1126
||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||
Sbjct 1070 CAGACTTACCATATGGCACAAACACAGGATCCTATGACCCTTATCAGCCCAGCATCATGG 1129
Query 1127 GAGATGCAACAATGACAAGCTCTAGGCATGGTCTTGGTGCACCTAATGTTGATCTAACTG 1186
||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1130 GAGATACAACAATGACAAGCTCTAGGTATGGTTTTGGTGCACCTAATGTTGATTTAACTG 1189
Query 1187 GCTCAGCTTCCTTTACAGCGAACTCAAATTATGGATTT-GGAGAAGATATTATACCTTTT 1245
|||||||||||| |||||| ||||||||| |||| ||| |||||||||||||||||| ||
Sbjct 1190 GCTCAGCTTCCTATACAGCCAACTCAAATCATGG-TTTGGGAGAAGATATTATACCTGTT 1248
Query 1246 GGTGATTATGTCAGTGACGCCTTGCCCTCCGAGAGATTCCAACCATTCCCTGATGAGCAT 1305
||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||
Sbjct 1249 GGTGATTATGTCAGTGACGCCTTTCCCTCTAAGACAGTCCAACCATTCCCTGATGAGCAT 1308
Query 1306 AATGGTACAAGCATGAACACTAGTAGTCTGGGCTCGGGTGGTTTCTATATTCCAATGCCT 1365
|||| |||| ||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 1309 AATGCTACACGCATGAACACTAGTAGTCTGGACTC--G-GGTTTCTATATTCCAATGCCT 1365
Query 1366 ATTG----------A-A-C--AT------TGG----AATGGTCATTTGCGTCACTCTCAG 1401
|||| | | | || ||| ||||||||||||||||| ||||||
Sbjct 1366 ATTGAACATCATAAATACCAAATAAACACTGGCATAAATGGTCATTTGCGTCATTCTCAG 1425
Query 1402 TTTCTTGGTCCCTTAACTTCTGCAGGGGGCACTGAGAACATGAGGGAGTTTGAAAGGCCG 1461
|||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1426 TTTCCTGGTCTCTTAACTTCTGCAGGGGACACTGAGAACATGAGGCAGTTTGAAAGGCCG 1485
Query 1462 ATGTACTCAGACCGTAACATCTTCCCTTCATTTGTTTATCCTTCATCATCAAGGGGTTTG 1521
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CTGTACTCAGACCGCAACATCTTCCCTTCATTTGTTTATCCTTCATCATCAAGGGGTTTG 1545
Query 1522 TCTACTAAGGACGGACTCAACAATGAACTTCAAACATATCAACACCCGGAAGAATTTGGA 1581
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1546 TCTCCTAAGGACAGACTCAACAATGAACTTCAAACATATCAACACCAAGAAGAATCTAGA 1605
Query 1582 GATCATGTTTCTTATAC-AACTGATATGGTGGTTCGGGGTCCCAGTATTCACCCTTCTTT 1640
| ||||| ||||||||| ||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct 1606 GGTCATGATTCTTATACAAAC-GATATGGTGGTTTGGGGTTCCAGTATTTACCCTTCTTT 1664
Query 1641 TACCAATCCTTCAACATCTGGGGATGGAGCTGATTTGTATCCAGAGAACAGAGCCAATAA 1700
||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1665 TACTAATCCTTCAACATCAGGGGATGAAGCTGATTTGTATCTAGAGAACAGAGCCAATAA 1724
Query 1701 CGAAGTTCAAGCTTATCAACCGCATAAAGAATTTGGCGGTGATGCTTTTGACTCTAACAA 1760
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 1725 CGAAGTTCAAGCTTATCAACGGCAGAAAGAATTTGGCGATGATGCTTTTGACTCTAACAA 1784
Query 1761 TAGGGTGAC-----T----CATCGTGTTAGTCCTGCTAAACTTGAAAGAAACAGAACCAG 1811
||||||||| | ||||||||| |||||| |||||||| |||||| ||||||
Sbjct 1785 TAGGGTGACTGAAATGAAGAATCGTGTTAAACCTGCTGAACTTGAAGGAAACAAAACCAG 1844
Query 1812 ACCA-AGTGTCTTTAATAGGTTGGGTGGGCGTTTAAAACAACTTGATGCTGAAAGGGATA 1870
| | |||||||| |||||| |||||||||||| |||| ||| || |||||||| |||||
Sbjct 1845 A-GAGAGTGTCTTCAATAGGCTGGGTGGGCGTTCAAAAGAACGTGTTGCTGAAAAGGATA 1903
Query 1871 CGTCTCCTGACACTGAATCAGTAGATGAGGTCATGGCCTTTTTAAATGACTGTCACAAAG 1930
|||||| |||||||||||||| || |||||||||||||||||||| ||| |||||||||
Sbjct 1904 TGTCTCCGGACACTGAATCAGTCGACGAGGTCATGGCCTTTTTAAACGACCGTCACAAAG 1963
Query 1931 ATTGGATGGAGCAAAAAAGAGCAAATATGAGTAATTCTGAAGATGTTGCAATACCGAAGA 1990
|||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct 1964 ATTGGATGGAGCAAAAAAGAGCAAATATGAGTAATTCTGAGGATTTTGGAAAACCGAAGA 2023
Query 1991 AGAAAAAGGAAAAGATTCATACAGCAGAGGT---ACTTGACAATGATTTGATGCTTACTT 2047
|||||||||||||||| |||||||||||||| | || |||||| |||||||| |||
Sbjct 2024 AGAAAAAGGAAAAGATACATACAGCAGAGGTCAAAAGAGAAAATGATATGATGCTTCCTT 2083
Query 2048 TTACTGAGACTACTCCAGATGATCTGTTGGATTGTGAAGGAAGTATGGAACATAGTGTTC 2107
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2084 TTACTGAGACTACTCCAGATAATCTGTTGGATTGTGAAGGAACTATGGAACATAGTGTTC 2143
Query 2108 AAAAGCTACCATTCATTGATTTTAAGCGCCGTAGCAGAGCTC-AA--AGGAGCCTTGGTA 2164
|||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 2144 AAAAGCTACCATTCATTGATTTTAAGCGCCGTAGCAAAGCTCGAAGGAGCAGCCTTGGTA 2203
Query 2165 ATCCAACTCAAGGGTGTAAAGACAACCCCGAACATTCAGCTTCTCCGAACAAGAAAAGGA 2224
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 2204 ATCCAACTCAAGGGTGTAAAGACAGCCCCGAACATTCAGCTTCTCAGAGCAAGAAAAGGA 2263
Query 2225 AGCTGCTGAGACCAAAACTCGTTGAAGATGACTCAGAAAAGGATAGAGAAAACAAAGCTG 2284
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
Sbjct 2264 AGCTGCTGAGACCAAAACTCGTTGAAGATGACTCGGAAAAGGATAGAGGACACAAAGCCG 2323
Query 2285 GTCCTATTAAAATTGTCTTGGCCTCAGAAAAAGATAGAGGAAACAATGATCTGACTGTAA 2344
||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||
Sbjct 2324 GTCCTATTAAAATTGTCTTGGCCTCGGCAAAAGATAGAGGAAACAATGATCCGATTGTAA 2383
Query 2345 AAGTCTTGGCCTCACAGTCACCTACTAAAGT-CCATGTCCATGACTTCCTTGGACGTAAT 2403
|| ||||||||||| ||||| ||||| |||| ||| ||||||| |||||||||||| |||
Sbjct 2384 AATTCTTGGCCTCAAAGTCAGCTACTGAAGTCCCA-GTCCATGGCTTCCTTGGACGAAAT 2442
Query 2404 GAAGGCGACTCGCAAATGGATAGAGGTAGGAATGATAATCCTATTGAAACTGTCTTGGCC 2463
||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 2443 GAAGGTGACTCGCAAAAGGATAGAGGTAAGAATGATAATCCTATCGAAAATGTCTTGGCC 2502
Query 2464 TCACAGTCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAATGTGACTCG 2523
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2503 TCACAGTCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCG 2562
Query 2524 CAAAAGGA------T--GA-T-A-A-TCCTGTTGAAAATTTATTGGCCTCACAGTCAGCT 2571
|||||||| | || | | | |||| |||||||||||||||||||||||||||||
Sbjct 2563 CAAAAGGAGAGAGGTAAGAATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCAGCT 2622
Query 2572 ACTGAAGTCCACGTCCGTGACTTCTTTGGACGTAATGAAGATGACTCGGAAAAGAATAAA 2631
|||||||||| ||||| |||||||||||||||| |||||||||||| || |||| ||| |
Sbjct 2623 ACTGAAGTCCCCGTCCATGACTTCTTTGGACGTGATGAAGATGACTTGGGAAAGGATAGA 2682
Query 2632 GGAAACAATAATGATCCTGCTGAAAATTTCTTGGCCTTAGAGTATGCTTCTGAAGTCCCC 2691
||||| ||| | ||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2683 GGAAAAAATGACGATCCTGTTGAAAATTTCTTGGCCTCAGAGTTTGCTTCTGAAGTCCCC 2742
Query 2692 TTCCATGACTTCCTTGGACGTGATGAACGATAA 2724
|||||||||||||||||| ||||||| ||||||
Sbjct 2743 TTCCATGACTTCCTTGGATGTGATGATCGATAA 2775
Score = 276 bits (149), Expect = 7e-73
Identities = 263/315 (83%), Gaps = 19/315 (6%)
Strand=Plus/Plus
Query 2312 AAAAAGATAGAGGAAACAATGAT-CTGACTGT--AAAA-GTCTTGGCCTCACAGTCACCT 2367
|||| |||||||| || |||||| | || | |||| |||||||||||||||||| ||
Sbjct 2456 AAAAGGATAGAGGTAAGAATGATAAT-CCTATCGAAAATGTCTTGGCCTCACAGTCAGCT 2514
Query 2368 ACTAAAGTCCATGTCCATGACTTCCTTGGACGTAATGAAGGCGACTCGCAAATGGATAGA 2427
||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 2515 ACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCGCAAAAGGAGAGA 2574
Query 2428 GGTAGGAATGATAATCCTATTGAAACTGTCTTGGCCTCACAGTCAGCTACTGAAGTCCCC 2487
|||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 2575 GGTAAGAATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCAGCTACTGAAGTCCCC 2634
Query 2488 GTCCATGACTTCCTTGGACGTAATGAATG-TGACTCGCAAAAGGAT-GA--------T-A 2536
|||||||||||| |||||||| ||||| | ||||| | ||||||| || | |
Sbjct 2635 GTCCATGACTTCTTTGGACGTGATGAA-GATGACTTGGGAAAGGATAGAGGAAAAAATGA 2693
Query 2537 --ATCCTGTTGAAAATTTATTGGCCTCACAGTCAGCTACTGAAGTCCACGTCCGTGACTT 2594
|||||||||||||||| ||||||||| ||| ||| ||||||||| | ||| ||||||
Sbjct 2694 CGATCCTGTTGAAAATTTCTTGGCCTCAGAGTTTGCTTCTGAAGTCCCCTTCCATGACTT 2753
Query 2595 CTTTGGACGTAATGA 2609
| ||||| || ||||
Sbjct 2754 CCTTGGATGTGATGA 2768
Score = 267 bits (144), Expect = 4e-70
Identities = 269/326 (83%), Gaps = 22/326 (7%)
Strand=Plus/Plus
Query 2412 CTC-GCAAATGGATAGAGGTAGGAATGATAATCCTATTG-AAACTGTCTTGGCCTCACAG 2469
||| ||||| |||||||| | || || |||| |||| ||| | ||||||||||| ||
Sbjct 2346 CTCGGCAAA-AGATAGAGG-A--AACAATGATCCGATTGTAAAAT-TCTTGGCCTCAAAG 2400
Query 2470 TCAGCTACTGAAGTCCCCGTCCATGACTTCCTTGGACGTAATGAATGTGACTCGC---A- 2525
||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||| |
Sbjct 2401 TCAGCTACTGAAGTCCCAGTCCATGGCTTCCTTGGACGAAATGAAGGTGACTCGCAAAAG 2460
Query 2526 -A-A-A-G---G-ATGATAATCCTGTTGAAAATTTATTGGCCTCACAGTCAGCTACTGAA 2577
| | | | | ||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 2461 GATAGAGGTAAGAATGATAATCCTATCGAAAATGTCTTGGCCTCACAGTCAGCTACTGAA 2520
Query 2578 GTCCACGTCCGTGACTTCTTTGGACGTAATGAAGATGACTCGGAAAAGAATAAAGGAAAC 2637
|||| ||||| ||||||| ||||||||||||||| ||||||| ||||| | | ||| ||
Sbjct 2521 GTCCCCGTCCATGACTTCCTTGGACGTAATGAAGGTGACTCGCAAAAGGAGAGAGGTAAG 2580
Query 2638 AATAATGATCCTGCTGAAAATTTCTTGGCCTTAGAGT-ATGCTTCTGAAGTCCCCTTCCA 2696
||| || ||||| ||||||||| ||||||| | ||| | ||| ||||||||||| ||||
Sbjct 2581 AATGATAATCCTATTGAAAATTTATTGGCCTCACAGTCA-GCTACTGAAGTCCCCGTCCA 2639
Query 2697 TGACTTCCTTGGACGTGATGAACGAT 2722
||||||| |||||||||||||| |||
Sbjct 2640 TGACTTCTTTGGACGTGATGAA-GAT 2664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102767481010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5