BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35150.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482480 jgi|Araly1|482480|fgenesh2_kg.4__1540__AT2G35150.1 1755 0.0
> Ahg482480 jgi|Araly1|482480|fgenesh2_kg.4__1540__AT2G35150.1
Length=1173
Score = 1755 bits (950), Expect = 0.0
Identities = 1107/1180 (94%), Gaps = 22/1180 (2%)
Strand=Plus/Plus
Query 1 ATCATAAACCCACCGAGACGATGT-CTCTCATCATCGTCTTCTTCTT-CTTCTCACTCT- 57
|||||||| ||| ||||| ||| | ||||||||||| ||||||| || | |||||||||
Sbjct 1 ATCATAAAACCAACGAGATGAT-TCCTCTCATCATCTTCTTCTT-TTCCCTCTCACTCTC 58
Query 58 TGCTCACATCCAATGGACAGTTCTTCGACGAGAGCAAGAACTATGAAGGCTCCTCCGATC 117
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 59 T-CTCACATCTAATGGACAGTTCTTCGACGAGAGCAAGAACTACGAAGGCTCCTCCGATC 117
Query 118 TCGTTGACCTTCAATACCACTTGGGTCCGGTCATATCCTCGCCGGTGACGAGTCTCTACA 177
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 118 TCGTCGACCTTCAATACCACATGGGTCCGGTCATATCCTCGCCGGTGACGAGTCTTTATA 177
Query 178 TCATTTGGTACGGCCGATGGAACCCAACTCACCAATCTATAATCCGAGACTTTCTCTACT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TCATTTGGTACGGCCGATGGAACCCAACTCACCAATCTATAATCCGAGACTTTATCTACT 237
Query 238 CTGTCTCTGCACCGGCACCGGCTCAGTACCCGTCAGTATCCAACTGGTGGAAGACAGTGA 297
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTATCTCTTCACCGACACCGGCTCAGTACCCGTCAGTATCCAACTGGTGGAAGACAGTGA 297
Query 298 GGCTATACAGAGACCAGACAGGTTCCAACATCACCGACACTCTTGTCTTATCCGGAGAGT 357
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 298 GGCTATACAGAGACCAGACAGGTTCCAACATCACCGACACTCTTGTCTTGTCCGAAGAGT 357
Query 358 TCCACGACTCAACGTACTCTCATGGATCTCATCTCACTCGCTTCTCTGTTCAGTCTGTGA 417
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 358 TCCACGACTCTACGTACTCTCATGGATCTCACCTAACTCGCTTCTCTGTTCAGTCTGTGA 417
Query 418 TCAGAACTGCCTTGACTTCCAAGTTACCACTAAACGCTGTAAACGGCTTGTACTTAGTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAGAACTGCCTTGACTTCCAAGTTACCACTAAACGCTGTAAACGGCTTGTACTTAGTCT 477
Query 478 TGACCTCGGATGATGTAGAGATGCAAGAGTTCTGCAGAGCGATTTGCGGGTTTCATTACT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGACCTCGGATGATGTAGAGATGCAAGAGTTCTGCAGAGCGATTTGCGGGTTTCATTACT 537
Query 538 TCACTTTCCCAAGCGTTGTGGGTGCAACCGTACCGTATGCTTGGGT-GGGCAACAGTGAG 596
||||||||||||||||||| |||||||||||||| || | |||||| ||| |||||| ||
Sbjct 538 TCACTTTCCCAAGCGTTGTTGGTGCAACCGTACCATACGTTTGGGTCGGG-AACAGT-AG 595
Query 597 -AGACAGTGTCCAGAAATGTGTGCGTACCCATTTGCACAGCCTAAGCCATTTCCGGGGAG 655
| |||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 596 GAAACAGTGTCCAGAGATATGCGCGTACCCATTTGCACAACCTAAGCCATTTCCGGGAAG 655
Query 656 CGGGTTTGTAGCCAGAGAGAAGATGAAACCGCCAAATGGAGAGGTAGGAATCGATGGGAT 715
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 656 CGGGTTTGTAGCCAGAGAGAAGATGAAACCGCCAAACGGAGAGGTGGGAATTGATGGGAT 715
Query 716 GATCAGTGTGATAGCTCATGAGCTGGCAGAAGTGTCGAGTAACCCGATGTTAAACGGATG 775
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 716 GATCAGCGTGATAGCTCATGAGCTGGCGGAAGTGTCCAGTAACCCGATGTTGAACGGATG 775
Query 776 GTATGGAGGAGAGGACGCGACAGCACCGACAGAGATAGCGGATTTATGTTTGGGAGTGTA 835
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 776 GTATGGAGGAGAGGATGCGACGGCACCCACAGAGATAGCGGATTTATGTTTGGGAGTGTA 835
Query 836 TGGGTCAGGAGGAGGAGGAGGCTATATGGGAAGTGTGTATAAGGATAGGTGGAGGAATGT 895
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGATCAGGAGGAGGAGGAGGGTATATGGGAAGTGTGTATAAGGATAGGTGGAGGAATGT 895
Query 896 GTATAATGTGAAGGGCGTTAAAGGAAGAAAGTATCTAATTCAATGGGTTTGGGATCTTAA 955
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 GTATAATGTGAAGGGCGTTAAAGGAAGAAAGTATCTGATTCAATGGGTTTGGGATCTTAA 955
Query 956 TAGGAACAGATGCTTTGGACCAAACGCTATGAATTAGAGACTATCATGTTTGTTACCTCT 1015
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 956 TAGGAACAGATGCTTTGGACCAAACGCTATGAATTAGAGACAATCATGTTTGTTACCACT 1015
Query 1016 TTTCACCAAAGCCTTGAGCTTGAAGCTTGGGGAAAC---C-TGTATATGGTTTATCTTTT 1071
|| ||||||| |||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1016 TT-CACCAAACCCTTGAGCTTGAAGCTTGAGGAAACAAACCTGTATATGGTTTATCTTTT 1074
Query 1072 CCTTGCCTAGTCGA-T----TCTATGCATTTGATT-GTTTAAGACTACAAAATCTAGGTA 1125
|||| ||||||||| | ||| |||||||| | ||||||||||||||||||||||||
Sbjct 1075 CCTTACCTAGTCGACTCGACTCTTTGCATTTG-TCAGTTTAAGACTACAAAATCTAGGTA 1133
Query 1126 TTACTAGCTGTCAAGATTCACTTGACAAAGTTTCTGAACC 1165
||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTATTAGCTGTCAAGATTCACTTGACAAAGTTTCTGAACC 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5