BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35155.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934124 jgi|Araly1|934124|scaffold_402112.1 2994 0.0
Ahg948569 jgi|Araly1|948569|scaffold_800456.1 675 0.0
Ahg948543 jgi|Araly1|948543|scaffold_800430.1 608 5e-173
> Ahg934124 jgi|Araly1|934124|scaffold_402112.1
Length=1774
Score = 2994 bits (1621), Expect = 0.0
Identities = 1730/1782 (97%), Gaps = 10/1782 (1%)
Strand=Plus/Plus
Query 289 AAGTAGCATTGTAAAAGGAGATGAATTTGGGAGCTTGGGGTCAGAGATTCATCCAAGCAG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTAGCATTGTAAAAGGAGATGAATTTGGGAGCTTGGGGTCAGAGATTCATCCAAGCAG 60
Query 349 CAGCTTCTTCTGAATCGGAGGATTCTGCTTTGGATTTGGAGAGAAATCATCACTGCAATC 408
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGCTTCTTCTGAATCCGAGGATTCTGCTTTGGATTTGGAGAGAAATCATCACTGCAATC 120
Query 409 ACTTGAGTCTTCCATCATCTTCAAGTCCATCTCCTCTTCAGCCATTCACACTCAACATCC 468
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTGAGTCTTCCGTCATCTTCAACTCCATCTCCTCTTCAGCCATTCACACTCAACATCC 180
Query 469 AACATGCTGAGAGCAATGCCCCTTACTTCTCCTGGCCTACGCTCAGCAGGCTTAACGACA 528
||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 181 AACATGCAGAGAGCAATGCCCCTTACTTCTCGTGGCCTACTCTCAGTAGGCTTAACGATG 240
Query 529 CTGTTGAAGACCGAGCTAACTACTTTGGTAATCTCCAGAAAGGGGTTTTACCAGAAACTG 588
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CTGTTGAAGACCGAGCTAACTACTTTGGTAATCTTCAGAAAGGGGTTTTACCAGAAACTG 300
Query 589 TTGGCAGGTTGCCATCAGGACAACAAGCCACTACTTTGCTTGAGCTCATGACCATCAGAG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGCAGGTTGCCATCAGGACAACAAGCCACTACTTTGCTTGAGCTCATGACCATCAGAG 360
Query 649 CGTTTCATAGTAAAATCCTGCGCCGCTTCAGCCTTGGTACTGCGGTTGGGTTTCGGATCA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTTTCATAGTAAAATCCTGCGCCGCTTCAGCCTTGGTACTGCGGTTGGGTTTCGGATCA 420
Query 709 GCCGTGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCATA 768
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 GCCGTGGTGTTCTAACGAATGTTCCAGCAATACTTGTCTTTGTTGCTAGGAAAGTCCATA 480
Query 769 GGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGGGTCCTGGAGGGGTAT 828
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 GGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGGGCCCTGGAGGGGTAT 540
Query 829 GGTGCGATGTAGATGTTGTGGAATTCCAATACTACGGTGCTCCTGCTGCAACACCAAAGG 888
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GGTGCGATGTCGATGTTGTGGAATTCCAATATTACGGTGCTCCTGCTGCAACACCAAAGG 600
Query 889 AACAAGTTTATAATGAACTTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACAAGTTTATAATGAACTTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTG 660
Query 949 GTTCTCAGGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAA 1008
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 661 GTTCTCAGGTTGCAAGCCAAGAAACGTATGGAACCTTGGGAGCCATAGTGAAAAGCAGAA 720
Query 1009 CAGGTAACCACCAGGTTGG-TTTCCTTACCAATCGGCATGTCGCAGTTGATTTGGATTAT 1067
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 721 CAGGTAACCATCAGGTTGGATTTC-TTACCAATCGGCATGTCGCAGTTGATTTGGATTAT 779
Query 1068 CCAAGCCAGAAAATGTTTCATCCTTTACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAAGCCAGAAAATGTTTCATCCTTTACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGT 839
Query 1128 GCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTATGGCATATTTGCTGGC 1187
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 GCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTACGGCATATTTGCTGGC 899
Query 1188 ACAAATCCAGAAACGTTTGTGAGAGCGGATGGTGCCTTTATTCCTTTTGCAGAAGATTTC 1247
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 900 ACAAATCCAGAAACATTTGTAAGAGCGGACGGTGCCTTTATTCCTTTTGCAGAAGATTTC 959
Query 1248 AACACGAGCAATGTAACTAC-GTTGATAAAGGGCATTGGTGAGATAGGAGATGTGCACGT 1306
|||||||||||||||||||| || |||||||||||||||||| |||||| |||| |||||
Sbjct 960 AACACGAGCAATGTAACTACCGT-GATAAAGGGCATTGGTGAAATAGGAAATGTACACGT 1018
Query 1307 TATAGACTTGCAATCCCCAATTGATAGCCTTATTGGGAAACAAGTTGTCAAAGTTGGAAG 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TATAGACTTGCAATCCCCAATTGATAGCCTTATTGGGAAACAAGTTGTCAAAGTTGGAAG 1078
Query 1367 AAGCTCTGGATATACCACCGGAACCATAATGGCTTATGCATTGGAATACAACGACGAGAA 1426
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 AAGCTCTGGATATACCACCGGAACCATAATGGCTTATGCTTTGGAATACAACGACGAGAA 1138
Query 1427 AGGGATCTGTTTCCTCACGGATTTTCTGGTCATTGGTGAAAACCAGCAAACTTTTGACCT 1486
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 AGGGATCTGTTTCCTCACGGATTTTCTGGTCATTGGCGAAAACCAGCAAACTTTTGACCT 1198
Query 1487 TGAAGGTGACAGTGGAAGCCTAATACTCTTAACGGGTCCAAATGGTCAGAAGCCACGACC 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 TGAAGGTGACAGTGGAAGCCTAATACTCTTAACGGGTCCAAATGGTCAGAAGCCAAGACC 1258
Query 1547 AGTTGGGATCATTTGGGGAGGAACAGCCAACCGAGGAAGACTTAAACTAATAGCCGGTCA 1606
||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1259 AGTTGGGATCATTTGGGGAGGGACAGCCAACCGCGGAAGACTTAAACTCATAGCTGGTCA 1318
Query 1607 AGAACCCGAGAACTGGACAAGCGGAGTTGATCTTGGTCGCCTTTTGGATCTCTTGGAGCT 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGAACCCGAGAACTGGACAAGCGGAGTTGATCTTGGTCGCCTTTTGGATCTCTTGGAGCT 1378
Query 1667 TGATCTCATCACATCCAACCATGAACTTGAAGCAGCAGCAGCAGCACGAGAAGAAAGAAA 1726
||||||||||||||| |||||||| ||||||||||||||| | | | || | |||||||
Sbjct 1379 TGATCTCATCACATCAAACCATGAGCTTGAAGCAGCAGCA-C-G-A-GA-AC-AAAGAAA 1432
Query 1727 CACTTCGGTTACAGCCCTTGATTCAACCGTTAGCCAGTCATCCCCGCCTGACCCGGTTCC 1786
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1433 CACTTCGGTTACAGCCCTCGATTCAACGGTTAGCCAGTCATCCCCGCCGGACCCGGTTCC 1492
Query 1787 ATCAGGAGACAAACAAGATGAGAGCTTTGAGCCATTTATTCCGCCTGAGTTCCATATAGA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 ATCAGGAGACAAACAAGATGAGAGCTTTGAGCCATTTATTCCGCCTGAGTTTCATATAGA 1552
Query 1847 AGAAGCAATCAAACCAACACTTGAAGTTGAGGAACATATCTTCATTGCTCCTATATCGGT 1906
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1553 AGAAGCAATCAAACCAACACCTGAAGTAGAGGAACATATCTTCATTGCTCCTATATCGGT 1612
Query 1907 TAACGAGTCTACTTCCGCCATTAAAGGGCAAGAGATACCCAAATTGGATAATCTCATGGC 1966
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1613 TAACGAGTCTACTTCCGCCATTAAAGGGCAAGAGAAACCCAAATTGGATAATCTCATGGC 1672
Query 1967 TTTAAAGAACAGTTCCGAAGAAGAGGTTAACATATCGTTGCATCTAGGTGAGCCCAAACT 2026
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1673 TTTAAAGAACAGTTCCGAAGAAGAGGTTAACGTATCGTTGCATCTAGGTGAGCCCAAACT 1732
Query 2027 AAAGAAGCCAAAGtttttttAGCTGAACCAGGAAATTGATCT 2068
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AAAGAAGCCAAAGTTTTTTTAGCTGAACCAGGAAATTGATCT 1774
> Ahg948569 jgi|Araly1|948569|scaffold_800456.1
Length=1886
Score = 675 bits (365), Expect = 0.0
Identities = 919/1182 (78%), Gaps = 56/1182 (5%)
Strand=Plus/Plus
Query 534 GAAGACCGAGCTAACTACTTTGGTAATCTCCAGAAAGGGGTTTTACCAGAAACTGTTGGC 593
|||||| |||| ||||| |||| ||||| |||||||| ||||| || |||||| || |
Sbjct 246 GAAGACAGAGCAAACTATTTTGCAAATCTTCAGAAAGGTGTTTTGCCTGAAACT-TTTG- 303
Query 594 A-GG-TTGCCAT-CA-GGACA-ACAAGCCACTACTTTGCTTGAGCTCATGACCATCAGAG 648
| || || || | || ||| | | |||| ||||| |||||||| | |||| || ||||
Sbjct 304 ATGGTTTACC-TACAGGGA-AGA-AAGCTACTACGTTGCTTGAATTGATGATGATTAGAG 360
Query 649 CGTTTCATAGTAA-AATCCTGCGCCGCTTCAGCCTTGGTACTGCGGTTGGGTTTCGGATC 707
| ||||||||||| ||| | | | || || || ||||| || |||| ||||||||
Sbjct 361 CTTTTCATAGTAAGAAT-TTAAGGAGGTTTAGTCTCGGTACAGCTATTGGATTTCGGATT 419
Query 708 AGCCGTGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCAT 767
|| || || ||| | || ||| | | || || ||||| ||||||||| ||||||| ||
Sbjct 420 AGACGAGGCGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCAC 479
Query 768 AGGCAATGGCTAAATCCAATGCAGTGCCTT-CCTTCTGCCCTT-GAGGGTCCTGGAGGGG 825
| ||||||||| ||||| | ||||| || ||| | | |||| |||||||||||||| |
Sbjct 480 AAGCAATGGCTTAATCCTCTTCAGTG-TTTACCTACAG-CCTTGGAGGGTCCTGGAGGAG 537
Query 826 TATGGTGCGATGTAGATGTTGTGGAATTCCAATACTACGGTGCTCCTGCTGC-AAC-ACC 883
| ||||| |||||||||||||| || || ||||| || ||||| ||||| || ||| ||
Sbjct 538 TTTGGTGTGATGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGC-GCAAACGCCC 596
Query 884 AAAGGAACAAGTTTATA-ATGAACTTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTG 942
||| || || || |||| | || ||||| |||| | ||||||| |||| | | | ||| |
Sbjct 597 AAA-GAGCAGGTGTATACA-GAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATCG 654
Query 943 GCTCTGGTTCTCAGGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAA- 1001
| |||||||| ||||| || |||||||| ||||||||||||||||||||||| || |||
Sbjct 655 GATCTGGTTCACAGGTGGCTAGCCAAGAGACATATGGAACCTTGGGAGCTATTGT-AAAG 713
Query 1002 AGCAGAACAGGTAACCA-CCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTGATTT 1060
|| | ||| || || || || ||||| |||||||| || || ||||| |||||||||||
Sbjct 714 AGTAAAACCGG-AATCAGACAAGTTGGCTTCCTTACAAACCGTCATGTTGCAGTTGATTT 772
Query 1061 GGATTATCCAAGCCAGAAAATGTTTCATCCTTTACCTCCAAGCCTTGGACCGGGTGTCTA 1120
|| || ||||||||||| |||||||||||||| || || ||||| ||||| || |||||
Sbjct 773 AGACTACCCAAGCCAGAAGATGTTTCATCCTTTGCCACCTAGCCTCGGACCCGGAGTCTA 832
Query 1121 CCTCGGTGCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTATGGCATATT 1180
| | |||||||| || |||||||| || || || || ||||| | ||||||||||| ||
Sbjct 833 CTTAGGTGCAGTGGAAAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCAT-TT 891
Query 1181 T-GCTGGCACAAATCCAGAAACGTTTGTGAGAGCGGATGGTGCCTTTATTCCTTTTGCAG 1239
| ||||| || || |||||||| ||||| |||| ||||| ||||| || || ||||| |
Sbjct 892 TCGCTGGAACTAACCCAGAAACATTTGTTCGAGCTGATGGAGCCTTCATACCATTTGCGG 951
Query 1240 AAGATTTCAACACGAGCAATGTAACTAC-GTTGAT-AAAGGGCATTGGTGAGATAGG-AG 1296
| || ||||||| || |||||||| || || | ||| || ||||||||||| || |
Sbjct 952 AGGACTTCAACATGAATAATGTAACCACAACTG-TCAAA-GGTATTGGTGAGATCGGTA- 1008
Query 1297 ATGTGCACGTTA-TAGACT-TGCAATCCCCAATTGATAGCCTTATTGGGAA--ACAAGTT 1352
|| | || | || | || | | || || ||||| | || | || | |||| | |||||
Sbjct 1009 ATATCCATGCTACT-GA-TCTACAGTCACCAATCAACAGTC-TAATAGGAAGGA-AAGTT 1064
Query 1353 GTCAAAGTTGGAAGAAGCTCTGGATAT-ACCACCGGAACCATAATGGCTTATGCATTGGA 1411
||||||||||||||||||||||| | | ||||| || ||||||||||| ||||| |||||
Sbjct 1065 GTCAAAGTTGGAAGAAGCTCTGGTT-TGACCACTGGGACCATAATGGCATATGCGTTGGA 1123
Query 1412 ATACAACGACGAGAAAGGGATCTGTTTCCTCACGGATTTTCTGGTCATTGGTGAAAACCA 1471
|||||| |||||||||||||| |||||||| || |||||||| || |||||||||||||
Sbjct 1124 ATACAATGACGAGAAAGGGATTTGTTTCCTAACTGATTTTCTTGTTGTTGGTGAAAACCA 1183
Query 1472 GCAAACTTTTGACCTTGAAGGTGACAGTGGAAGCCTAATACTCTTAAC-G-GGTCCA--A 1527
||| |||||||| ||||| ||||||||||||||||| || || || | | || | | |
Sbjct 1184 GCAGACTTTTGATCTTGAGGGTGACAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGA 1243
Query 1528 -ATGG-TCAGAAGCCACGACCAGTTGGGATCATTTGGGGAGGAACAGCCAACCGAGGAAG 1585
| | | |||| || ||||| ||||| || ||||||||||||||||| ||| | ||| |
Sbjct 1244 GAAGAATGAGAAACCGCGACCTGTTGGAATTATTTGGGGAGGAACAGCAAACAGGGGACG 1303
Query 1586 ACTTAAA-CTAATAGCCGGTCAAGAACCCGAGAACTGGACAAGCGGAGTTGATCTTGGTC 1644
|| || |||| || || || |||| ||||| |||||||| ||||||||||||||
Sbjct 1304 G-TTGAAGCTAAAAGTGGGGGAACAACCTGAGAATTGGACAAGTGGAGTTGATCTTGGAA 1362
Query 1645 GCCTT-TTGGATCT-CTTGGAGCTTGATCTCATCACATCCAA 1684
| || || |||| |||| ||||||||||||| || |||||
Sbjct 1363 GAGTTCTTA-ATCTTCTTG-AGCTTGATCTCATTACTTCCAA 1402
> Ahg948543 jgi|Araly1|948543|scaffold_800430.1
Length=1778
Score = 608 bits (329), Expect = 5e-173
Identities = 764/970 (79%), Gaps = 46/970 (5%)
Strand=Plus/Plus
Query 741 CTTGTCTTTGTTGCTAGGAAAGTCCATAGGCAATGGCTAAATCC-AATGCAGTGCCTT-C 798
||||| ||||||||| ||||||| || | ||||||||| ||||| | ||||| || |
Sbjct 345 CTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATGGCTTAATCCTCCT-CAGTG-TTTAC 402
Query 799 CTTCTGCCCTT-GAGGGTCCTGGAGGGGTATGGTGCGATGTAGATGTTGTGGAATTCCAA 857
|| | | |||| |||||||||||||| || ||||| |||||||||||||| || || |||
Sbjct 403 CTACAG-CCTTGGAGGGTCCTGGAGGAGTTTGGTGTGATGTAGATGTTGTTGAGTTTCAA 461
Query 858 TACTACGGTGCTCCTGCTGC-AAC-ACCAAAGGAACAAGTTTATA-ATGAACTTGTAGAT 914
|| || ||||| ||||| || ||| ||||| || || || |||| | || ||||| |||
Sbjct 462 TATTATGGTGCACCTGC-GCAAACGCCCAAA-GAGCAGGTGTATACA-GAGCTTGTTGAT 518
Query 915 GGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTGGTTCTCAGGTTGCAAGCCAAGAAACA 974
| | ||||||| |||| | | | ||| || |||||||| ||||| || |||||||| |||
Sbjct 519 GATCTGAGAGGCAGTGGTTCGTCCATCGGATCTGGTTCACAGGTGGCTAGCCAAGAGACA 578
Query 975 TATGGAACCTTGGGAGCTATAGTGAAA-AGCAGAACAGGTAACCA-CCAGGTTGGTTTCC 1032
|||||||||||||||||||| || ||| || | ||| || || || || ||||| ||||
Sbjct 579 TATGGAACCTTGGGAGCTATTGT-AAAGAGTAAAACCGG-AATCAGACAAGTTGGCTTCC 636
Query 1033 TTACCAATCGGCATGTCGCAGTTGATTTGGATTATCCAAGCCAGAAAATGTTTCATCCTT 1092
|||| || || ||||| ||||||||||| || || ||||||||||| |||||||||||||
Sbjct 637 TTACAAACCGTCATGTTGCAGTTGATTTAGACTACCCAAGCCAGAAGATGTTTCATCCTT 696
Query 1093 TACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGTGCAGTTGAGAGAGCAACATCGTTTA 1152
| || || ||||| ||||| || |||||| | |||||||| || |||||||| || || |
Sbjct 697 TGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGAAAGAGCAACTTCATTCA 756
Query 1153 TCACAGATGATCAGTGGTATGGCATATTT-GCTGGCACAAATCCAGAAACGTTTGTGAGA 1211
| || ||||| | ||||||||||| ||| ||||| || || |||||||| ||||| ||
Sbjct 757 TTACCGATGACCTTTGGTATGGCAT-TTTCGCTGGAACTAACCCAGAAACATTTGTTCGA 815
Query 1212 GCGGATGGTGCCTTTATTCCTTTTGCAGAAGATTTCAACACGAGCAATGTAACTAC-GTT 1270
|| ||||| ||||| || || ||||| || || ||||||| || |||||||| || |
Sbjct 816 GCTGATGGAGCCTTCATACCATTTGCGGAGGACTTCAACATGAATAATGTAACCACAACT 875
Query 1271 GAT-AAAGGGCATTGGTGAGATAGG-AGATGTGCACGTTA-TAGACT-TGCAATCCCCAA 1326
| | ||| || ||||||||||| || | || | || | || | || | | || || ||||
Sbjct 876 G-TCAAA-GGTATTGGTGAGATCGGTA-ATATCCATGCTACT-GA-TCTACAGTCACCAA 930
Query 1327 TTGATAGCCTTATTGGGAA--ACAAGTTGTCAAAGTTGGAAGAAGCTCTGGATAT-ACCA 1383
| | || | || | |||| | |||||||||||||||||||||||||||| | | ||||
Sbjct 931 TCAACAGTC-TAATAGGAAGGA-AAGTTGTCAAAGTTGGAAGAAGCTCTGGTT-TGACCA 987
Query 1384 CCGGAACCATAATGGCTTATGCATTGGAATACAACGACGAGAAAGGGATCTGTTTCCTCA 1443
| || ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
Sbjct 988 CTGGGACCATAATGGCATATGCGTTGGAATACAATGACGAGAAAGGGATTTGTTTCCTAA 1047
Query 1444 CGGATTTTCTGGTCATTGGTGAAAACCAGCAAACTTTTGACCTTGAAGGTGACAGTGGAA 1503
| |||||||| || |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1048 CTGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGACAGTGGAA 1107
Query 1504 GCCTAATACTCTTAAC-G-GGTCCA--A-ATGG-TCAGAAGCCACGACCAGTTGGGATCA 1557
|||| || || || | | || | | | | | | |||| || ||||| ||||| || |
Sbjct 1108 GCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAATGAGAAACCGCGACCTGTTGGAATTA 1167
Query 1558 TTTGGGGAGGAACAGCCAACCGAGGAAGACTTAAA-CTAATAGCCGGTCAAGAACCCGAG 1616
|||||||||||||||| ||| | ||| | || || |||| || || || |||| |||
Sbjct 1168 TTTGGGGAGGAACAGCAAACAGGGGACGG-TTGAAGCTAAAAGTGGGGGAACAACCTGAG 1226
Query 1617 AACTGGACAAGCGGAGTTGATCTTGGTCGCCTT-TTGGATCT-CTTGGAGCTTGATCTCA 1674
|| |||||||| |||||||||||||| | || || |||| |||| ||||||||||||
Sbjct 1227 AATTGGACAAGTGGAGTTGATCTTGGAAGAGTTCTTA-ATCTTCTTG-AGCTTGATCTCA 1284
Query 1675 TCACATCCAA 1684
| || |||||
Sbjct 1285 TTACTTCCAA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5