BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35190.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482484 jgi|Araly1|482484|fgenesh2_kg.4__1544__AT2G35190.1 2230 0.0
Ahg359097 jgi|Araly1|359097|fgenesh1_pg.C_scaffold_9000137 119 7e-26
> Ahg482484 jgi|Araly1|482484|fgenesh2_kg.4__1544__AT2G35190.1
Length=1574
Score = 2230 bits (1207), Expect = 0.0
Identities = 1482/1607 (92%), Gaps = 50/1607 (3%)
Strand=Plus/Plus
Query 1 GGTTTTCGGTAACGCAGTTTTTCAAAATC-TCTCATTTTCGTCCCTTCGAGCCAAATCAA 59
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GGTTTTCGGTAACGCAGGTTTTCAAAATCTTCTCATTTTCGTCCCTTCGAGCCAAATCAA 60
Query 60 TGGCAAAAAATTAGCTTTTAGAATTCCCCAAGaacaaaaacaaaaaatgtccgagagaaa 119
|||||||||| |||||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct 61 TGGCAAAAAAATAGCTTTTAGAAATCCCCACGACCAAAAAAAAAAAATGTCCGAGAGAAA 120
Query 120 ttagggaaaaacaaaacaaataaaatCTGGGTGTAGGGGAGAGAGAGCTCGTGCTCGTGA 179
||| | | || ||| ||||||| ||||| ||| ||||||||| |||| | ||
Sbjct 121 TTATCG------AGAA-AAA-AAAATCTTCGTGTA-GGG-GAGAGAGCTTGTGCCCAAGA 170
Query 180 TTTTG-ATATCTATCTCTTCGTTATCGATTTTGAACATCCACATTGTTCTTAGATCTG-- 236
||||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 171 TTTTGAAT-TCTGTCTCTTCGTTATCGATTTTGAACAACCACATTGTTCGTAGATCTGAA 229
Query 237 AAGa-aa-aaaaa--CACGGGTTCT-GTTATTACGATTTGCTCGGCGATTTTGACACCAG 291
|| | || ||||| |||||||| | ||| ||||||||||||||| |||||||||| |
Sbjct 230 AAAACAAGAAAAACTCACGGGTT-TGGTTCTTACGATTTGCTCGGTGATTTTGACATTAC 288
Query 292 GCTTTCAATTCTTTTCGTTGGAG---GTGATTCGATTTCAGATCCAT-CGGATCTAATCT 347
| ||| ||| |||| ||| ||| |||||||||| | ||||||| ||||||||||||
Sbjct 289 G-ATTCGATTGTTTT-GTT-GAGCTATTGATTCGATTCCGGATCCATACGGATCTAATCT 345
Query 348 CGGCGAGTCGATTCGTGGTCGACATTTTTCAAAAACTGCTCGCGTGGATCTGAAGAAGAG 407
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 346 CGGCGAGTCGATTCGTGGTCGACA-TTTTCAAAAGCTGTTCGCGTGGATCTGAAGAAGAG 404
Query 408 ACATTGTTGTCTTTTG-TATATCGGCACTGAATTTTTCTGGGAATCTGTGTAAAGATGGA 466
||||||||||| |||| |||||| |||||||| ||||||||||| | | |||||
Sbjct 405 ACATTGTTGTC-TTTGTTATATC-GCACTGAAATTTTCTGGGAA-------AGA-ATGGA 454
Query 467 TCCAATATCAGCGGTTAGCGAAGAGCTGGCTGAGATCGAAGGACAAATCAATGACATCTT 526
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 455 TCCAATATCTGCGGTTAGCGAAGAGCTGGCTGAGATCGAAGGACAGATCAATGACATTTT 514
Query 527 CCGTGCTTTATCAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CCGTGCTTTATCAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAG 574
Query 587 TAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAGCCTTATTAAAGATTT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAGCCTTATTAAAGATTT 634
Query 647 CGATAGGGAAATCAAAAGCTTGGAAAGCGGTAATGATGCCAGCACTAACCGGATGTTGAA 706
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 635 CGATAGGGAAATCAAGAGCTTGGAAAGCGGTAATGATGCCAACACTAACCGCATGTTGAA 694
Query 707 CGATAGACGACAATCTATGGTTAAGGAACTCAACTCATATGTTGCTCTTAAGAAGAAATA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CGATAGACGACAATCTATGGTTAAGGAACTCAACTCATATGTTGCTCTTAAGAAGAAATA 754
Query 767 CTCATCAAACCTAGCAAGCAATAACAAGCGAGTAGATCTTTTCGATGGACCTGGAGAAGA 826
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 755 CTCATCTAACCTAGCAAGCAATAACAAGCGAGTAGATCTTTTCGATGGACCCGGAGAAGA 814
Query 827 ACACATGGAAGAAAATGTCTTATTAGCTTCAAACATGTCCAATCAAGAGTTAATGGATAA 886
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 815 ACACATGGAAGAGAATGTCTTATTAGCTTCAAACATGTCCAATCAAGAGCTAATGGATAA 874
Query 887 AGGAAACTCAATGATGGATGACACAGATCAAGCTATTGAGAGAGGGAAAAAGATTGTACA 946
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 875 AGGAAACTCAATGATGGATGACACAGATCAAGCCATTGAGAGAGGGAAAAAGATTGTTCA 934
Query 947 AGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGACCGAGCAAAT 1006
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GGAGACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGACCGAGCAAAT 994
Query 1007 GAGTAGAGTTGTCAATGAGCTCGATTCTATTCATTTCTCACTCAAGAAAGCCTCCAAGCT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GAGTAGAGTTGTCAATGAGCTCGATTCTATTCATTTCTCACTCAAGAAAGCCTCCAAGCT 1054
Query 1067 GGTCAAGGAAATTGGTAGGCAGGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GGTCAAGGAAATTGGTAGGCAGGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCT 1114
Query 1127 TATCGTCATTGGTGTCATAGCAATCATCATCGTCAAGATTGTGAACCCAAACAACAAAGA 1186
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TATCGTTATTGGTGTCATAGCAATCATCATCGTCAAGATTGTGAACCCAAACAACAAAGA 1174
Query 1187 CATTCGCGACATACCGGGTGTGGGCCTAGCTCCACCAGCCATGAACAGACGTCTGCTCTG 1246
||| ||| ||||||| || | |||||||||||||||||||||| ||||| |||||||
Sbjct 1175 CATCCGCAACATACC---TG-G--CCTAGCTCCACCAGCCATGAACCGACGTTTGCTCTG 1228
Query 1247 GAACCATTACTGaaaaaaaaaTATCTCATTTTCACACCATTCAAAATACTGGTACGTTGC 1306
|||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct 1229 GAACCATTACTGAACAAACAATATCTCATTTTCAGGCCATTCAAAATACTGGTACGTCGA 1288
Query 1307 ACACTTTTTTGTCCCATACACATCTTGATCCTCCCCTTAGTC-ATGTTGTTGTAGATGAA 1365
||| ||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||
Sbjct 1289 ACATTTTTTTGTCCCATACACTTCTTGGTCCTCCCCGAAGTCCATGTTGTTGTAGATGAA 1348
Query 1366 ACCGCCTCACTTGAGAAAGTAACCAGTTTCGATTCACATGGCTCTTGGCTGCTGCACATT 1425
|||||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||
Sbjct 1349 ACCGCCTCACTTGAGAAATTAACCAGTTTCTATTCACATGGCTCTTGGCGGCTGTGCCTT 1408
Query 1426 TGAGCAGTCACAGGAATCAAATTCCC-TTTCGTTAAAAA-CCCAGGATCAAAACCATCTT 1483
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1409 TGAGCAGTCACAGGAATCAAATTCCCCTTTCGTTAAAAGTCCCAGAATCAAAACCATCTT 1468
Query 1484 TTTTAGCTCATGTGTTTGTATAAGGATGACTCTTTTGTGTTCTATCATATGTACGTGTAT 1543
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1469 TTTTAGCTCATGTGTTTGTATAAGGATGACTCTTT-GTGTTATATCATATGTACGTGTAT 1527
Query 1544 TTTTAAAACGTCTTCTCTGTTTCATGTTCTGGTAATAAAAACTTGTT 1590
|| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1528 TTCTAAAACGTCGTCTCTGTTTCATGTTCTGGTAATAAAAACTTGTT 1574
> Ahg359097 jgi|Araly1|359097|fgenesh1_pg.C_scaffold_9000137
Length=915
Score = 119 bits (64), Expect = 7e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 141 aaaatCTGGGTGTAGGGGAGAGAGAGCTCGTGCTCGTGATTTTGATATCTATCTCTTCGT 200
|||||||| |||||||||||||||||||||||| | ||||||||| ||| |||||||||
Sbjct 82 AAAATCTGTGTGTAGGGGAGAGAGAGCTCGTGCCCAAGATTTTGATTTCTGTCTCTTCGT 23
Query 201 TATCGATTTTGAACATCCACAT 222
||||||||||||||||||||||
Sbjct 22 TATCGATTTTGAACATCCACAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5