BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35200.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482485 jgi|Araly1|482485|fgenesh2_kg.4__1545__AT2G35200.1 887 0.0
> Ahg482485 jgi|Araly1|482485|fgenesh2_kg.4__1545__AT2G35200.1
Length=737
Score = 887 bits (480), Expect = 0.0
Identities = 681/772 (88%), Gaps = 38/772 (5%)
Strand=Plus/Plus
Query 1 TCTCCTTCACAACAAGCAACTGAGATTCAGAGACAAGAAAATGCAACGCGAGAAAACTCA 60
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTCCTTCACAGCAAGCAACAGAGATTCAGAGACAAGAAAATGCAACGCGACAAAACTCA 60
Query 61 AACGAATTTGCGTTTGGACGAAGGAGGAGGCAGCGTTTGGCAGAAATGCTCAAGACACGA 120
|| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 61 AATGAATTTGCGTTTCGACGAAGGAGGAGGTAGCGTTTGGCAGAGATGCTCAAGACACGA 120
Query 121 AGGTCGTTTTGTCTGCGTTGCCGGTGTTTGTCCTTATTGCCTCCACGAACGCCTCTCCTC 180
||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 121 AGGCCGTTTTGTCTGCGTTGGAGGTGTTTGTCCTTACTGCCTCCACGAACGTCTCTCCTC 180
Query 181 TCTCTGTCCCGATTGTGCTCACGATCTTCCCTGTTCGTGTACTCCACGCGCCTCCGTGTC 240
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 181 TCTCTGTCCCGATTGTGCTCACGATCTACCATGTTCGTGTACTCCTCGCGCCTCCGTGTC 240
Query 241 TTCCCGTGGAGAAGGTGACGTTTCGTTCGCCCGTATTGGGTCGGTTGGCCGTGTTGCCAA 300
|||| |||||| || ||||||| |||||||| |||| ||||| |||||||| ||||||||
Sbjct 241 TTCCGGTGGAGGAGATGACGTTCCGTTCGCCGGTATCGGGTCAGTTGGCCGCGTTGCCAA 300
Query 301 CTTGATTGAATGCGAACCGGCGTTTCGGAGGTCGACATCGATTACGGGTCCTTATTTCTG 360
|||||||||| ||||||||||||||||||| ||||||||| || ||| ||| ||||||||
Sbjct 301 CTTGATTGAAAGCGAACCGGCGTTTCGGAGATCGACATCGCTTGCGGTTCCGTATTTCTG 360
Query 361 GTCTGCTAAACCGGA-ACCGATATTAGAAACTGAGAAGGATCTTAAACCGGGTCGTGGAC 419
|||| |||||||||| | ||||||||||||| ||| |||||| |||||||| |||||||
Sbjct 361 GTCTTCTAAACCGGAGA-CGATATTAGAAACCGAGTCGGATCTCAAACCGGGCCGTGGAC 419
Query 420 GTTGGCTATGGAGATTGTTCAGAGGAAACAGAGAAGAAGAGACGAAAATAAAGGCTGCTA 479
| ||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 420 GCTGGCTCTGGAGATTGTTGAGAGGAAAC--AG-AGAAGAGACGAAAATAAAGGCTGCTA 476
Query 480 AGGTTATGAAGAAGTCGAATTCCGTTGCCGGAGAAGTTCTATTCTCACCGACGCCGG-TG 538
|||||||||||||||||| |||||||||||||||| ||||| || ||| |||||| ||
Sbjct 477 CGGTTATGAAGAAGTCGAAATCCGTTGCCGGAGAAGAGCTATTTTCGCCGGCGCCGGTTG 536
Query 539 ACTAGTAAGGGAAATGGTTGGTACTTTCCAAGTCCGATTAAGGTTTTCAGACAATCAAGA 598
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 -CAAGCAAAGGAAATGGTTGGTACTTTCCAAGTCCGATTAAGGTTTTCAGACAATCAAGA 595
Query 599 GTCTCCAAGATGATTTTTCAACAAAGATCTCCATTGTACAGAGGTTAACTTTTAGTTTTA 658
|||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 596 GTCTCCAAAATGATATTTCAACAAAGATCTCCATTGTACAGAGGTTAA-----A-TTTTA 649
Query 659 TTCTAGTCGTGTGTTCTGtttttttttttCCTTTTGTTTTACGTAAAA-GTTGATTAATG 717
| || | || | ||||||| | |||||||||||| |||| ||||||||||
Sbjct 650 -----G--GT-T-TT-T-TTTTTTT----C-TTTTGTTTTACG-AAAACGTTGATTAATA 692
Query 718 TTTTCTTTTCATAATGAAAATGTTGATGTTACACTTATACATAAAAATCGGA 769
||| |||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 693 TTT-CTTTTCATAATGAAAATGCAGAT----C--TTATACATAAAAATCGGA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5