BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35210.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934131 jgi|Araly1|934131|scaffold_402119.1 1875 0.0
> Ahg934131 jgi|Araly1|934131|scaffold_402119.1
Length=1241
Score = 1875 bits (1015), Expect = 0.0
Identities = 1172/1246 (94%), Gaps = 18/1246 (1%)
Strand=Plus/Plus
Query 122 GAATATTGTTTCACATCCCTACAATGGCGTCTGAGAATCTGAATGACAAGATCTCTGTTT 181
||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 GAATATTGTTT--CATCCCTACAATGGCGTCCGAGAATCTGAATGATAAGATCTCTGTTT 58
Query 182 TTAAGAAACTCAAAGCCAAATCAGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 241
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 59 TTAAGAAGCTCAAAGCCAAATCCGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 118
Query 242 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGCATCGATTGCTCAGCTGTTCATC 301
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 119 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGTATCGATTGTTCTGCTGTTCATC 178
Query 302 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCTCAG 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 179 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCCCTG 238
Query 362 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAACAGT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAGCAGT 298
Query 422 ACGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACCTCAAGAGCTGCTGATTTGT 481
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 299 ATGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACTTCGCGAGCTGCTGATTTGT 358
Query 482 ATAAACAGATACTTGCTAAAGAA---GTTGCTAAAAGCAAGGCTGAGGAAG-A--ATTGG 535
|||||||||| |||||||||||| ||||||||||||||||| ||||||| | |||||
Sbjct 359 ATAAACAGATTCTTGCTAAAGAAGTTGTTGCTAAAAGCAAGGCCGAGGAAGTATTATTGG 418
Query 536 ATTTGCCTCCATCTCCTCCTG-AT--TCAACACAAGTGCCTAATGGACTCTCCAGCATCA 592
||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 419 ATTTGCCTCCATCTCCTCCTGTTTCATCAACACAAGTGCCCAATGGGCTCTCCAGCATCA 478
Query 593 AAACCAGTGAAGCTCTTAAAGAGAG---TAATACTCTAAAGCAGCAAGAAAAGCCTGATG 649
||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||| |
Sbjct 479 AAACCAGTGAAGCTCCTAAAGAGAGTAATAATACGCTAAAGCAGCAAGAAAAGTCTGAAG 538
Query 650 TTGTTCCCGTCTCACCAAGAATTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAAGA 709
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 539 TTGTTCCCGTCTCACCCAGAGTTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAGGA 598
Query 710 CAGGCAAAACTGGCGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGTGGGACTCTTT 769
|||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 599 CAGGCAAAACAGGTGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGCGAGACTCTTT 658
Query 770 ATGATCAAAAGCCAGAGGAATCTGTTATTATACAAGCGACATCACCAGTTTCAGCTAAAT 829
|||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||
Sbjct 659 ATGATCAAAAGCCAGAGGAATCTGTTGTTATACAAGCGACTTCCCCAGCTTCAGCTAAAT 718
Query 830 CAGCCAGGTCATCGTTTTCCTCTCGTTTTGATTATGCGGACAATGTTCAAAACAGGGAAG 889
||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 719 CAGCCAGGTCATCGTTTTCCTCTCGGTTTGATTATGCGGACAGTGTTCAAAACAGAGAAG 778
Query 890 ATTACATGAGCCCTCAAGTCGTTAGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 949
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTACATGAGCCCTCAAGTGGTTGGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 838
Query 950 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 898
Query 1010 AACTGCAAATTCAAGAAACAGACGAAGCACGGAAGAAATTCACAAACGCCAAATCAATAT 1069
|| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 899 AAGTGCAAATTCAAGAAACAGATGAAGCACGGAAGAAATTCACAAACGCGAAATCAATCT 958
Query 1070 CCTCTGCTCAGTACTTT-GGAAATGACAACAACTCTGCTGATCTTGAGGCCAAAAGTTCA 1128
||||||||||||| ||| |||| |||||||||||| || || ||||||||||||||| ||
Sbjct 959 CCTCTGCTCAGTA-TTTCGGAAGTGACAACAACTCGGCCGACCTTGAGGCCAAAAGTACA 1017
Query 1129 TTGAAGAAGTTTTCTGGTTCATCAGCAATCTCTAGTGCTGATCTGTTTGGAGACGGTGAT 1188
||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1018 TTGAAGAAGTTCTCCGGTTCATCAGCAATCTCTAGTGCTGATTTGTTTGGAGACAGTGAT 1077
Query 1189 GGAGATTTCCCTCTTGATCTCACTGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCA 1248
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1078 GGAGATTTCACTCTTGATCTCACCGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCT 1137
Query 1249 CAACAAGACATATCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1308
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAACAAGACATGTCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1197
Query 1309 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATTTTCTCTAAA 1354
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATT--CTCTAAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5