BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35215.1

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934133 jgi|Araly1|934133|scaffold_402121.1                        551    3e-156


> Ahg934133 jgi|Araly1|934133|scaffold_402121.1
Length=361

 Score =  551 bits (298),  Expect = 3e-156
 Identities = 341/362 (94%), Gaps = 2/362 (1%)
 Strand=Plus/Plus

Query  186  TTCCGTAAGAACCAGAAACTATGAGCCTGAACTGCCTCGCTTGCCACATCTTGCAAAGAA  245
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTCCGTAAGAAACAGAAACAATGAGCCTGAACTGCCTCGCTTGCCACATCTTGCAAAGAA  60

Query  246  CAGACTCGGACAGAGACATGGGAAGCCGTAAAGATTCAAGCTTTAAAGAAAACTTCGCAA  305
            |||||||||||||||| || ||||||| ||||||||||| ||| |||||||| |||||||
Sbjct  61   CAGACTCGGACAGAGAAATAGGAAGCCTTAAAGATTCAAACTTCAAAGAAAATTTCGCAA  120

Query  306  CGTC-AGCGTTTGAAAAGATGGTAAGGAACAGATCATCGTTGCCCGTAGTGAGACGGGTC  364
            | || || || ||| ||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  121  CTTCAAG-GTATGACAAGATGGTAAGGAACAGATCATCGTTGCCAGTAGTAAGACGGGTT  179

Query  365  AATAAGGGTCATCGCAGGCTTTACAGTGCGGACATCATGGTCTATGGGGAACTGGACGAG  424
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  180  AATAAGGGTCATCGCAGGCTTTACAGTGCGGAGATCATGGTCTATGGGGAACTGGACGAG  239

Query  425  CCCAAGCTGGTCAGAAGCAGTGGGATCAGAAGGGATTGGAGTTTTGAGGATCTAAAGAAA  484
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  240  CCCAAGCTGGTCAGAAGCAGTGGGATCAGAAGGGATTGGAGCTTTGAGGATCTAAAGAAA  299

Query  485  CACAAAGATCAGCTAAGAATTGAAGAGACAATAAAGGAATAAGACAGATCCTTTTGCTAG  544
             | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  300  AATAAAGATCAGCTAAGAATTGAAGAGACAATAAAGGAATAAAACAGATCCTTTTGCTAG  359

Query  545  GT  546
            ||
Sbjct  360  GT  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26076075228


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5