BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35230.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482489 jgi|Araly1|482489|fgenesh2_kg.4__1549__AT2G35230.1 2662 0.0
> Ahg482489 jgi|Araly1|482489|fgenesh2_kg.4__1549__AT2G35230.1
Length=2038
Score = 2662 bits (1441), Expect = 0.0
Identities = 1817/1989 (91%), Gaps = 64/1989 (3%)
Strand=Plus/Plus
Query 1 GGAATCTTGTTTCGTCTCCTTTCTTCTTCGTTGACACAATTAGGGTTCACTTCAATTCTC 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAATCTAGTTTCGTCTCATTTCTTCTTCGTTGACACAATTAGGGTTCACTTCAATTCTC 60
Query 61 TTCTTTGGATCGTATTACTTGGGGAAATTTAAAGATCTGGCTCTGGGCTCTTCTGGGTTA 120
|||| ||||||||||||||||||||||||||||||||||| || || || |||||||
Sbjct 61 TTCTCTGGATCGTATTACTTGGGGAAATTTAAAGATCTGG--CT---CT-TT-TGGGTTA 113
Query 121 GCTAGGATCCAAATTCTCAGGTGAAAGACCTGAACTTTTGCTCCATCTTAATCGCttttt 180
||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 114 GCTCGGATCCAAATTCTCATGTGAAAGACCTGAACTTTTGCTCCATCTTAATCG-TTTTT 172
Query 181 tt-ttCTTCTCT-GGCTGGTCTGGTAATATATACAGAGAATTGATAGTGTAAGAATTGTA 238
|| ||||||| | |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 173 TTCTTCTTCT-TGGGCTGGTCTGGT-GGATATACAGAGAATTGATAGTGTTTGAATTGTA 230
Query 239 ATTCTGCTTTAGTGTTTTGATCGAGTTTCTGAGCTTAGTATCGTGGGTTTTTGGGTTCAG 298
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 231 ATTCTGCTTTAGTG-TTTGATCGAGTTTCTGAGCTTAGTATCGTGGGGTTTTGGGTTCAG 289
Query 299 GGGAGGATAAAGTAGCTTAAGAACTGAGGATCTACTTACTTAAGCTAGGCACTTTCAGCT 358
||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 290 GGGAGGATACAGTAGCTTAAGAACTGAGGATCTAGTTTCTTAGGCTAGGCACTTTCAGCT 349
Query 359 GAATTTTGATTCGTTTCTGGACTCATTAGTTGGGTAATGATTAGTTTTAGTTTCTCTTTG 418
||||||||||||||||||||||||||||||| ||| | | | | |||| | |||
Sbjct 350 GAATTTTGATTCGTTTCTGGACTCATTAGTTTGGT-A--A-T-G-ATTAG----T-TTT- 397
Query 419 GTGAATATTTTGTTTGATTAGGTAATTACTAGACAGTAGTTTCTCATTGGGTTTTGGTTG 478
| | ||| |||||| |||||||||| |||||||| || | ||| || | |
Sbjct 398 G-G-ATA-TTTGTTGGATTAGGTAACTACTAGAC---AG------A--GGG-ATTAGCT- 441
Query 479 ATTTAGGATAATTCTTGGGTCATATTTGG-TG-TTGGGTCTGTTGGTTGGTTTTTTAGAT 536
| | || | | ||||| | ||||| || || | ||||||||| ||||| |||
Sbjct 442 A-CCA-GA-GA-T-TTGGG---T-TTTGGCTGATT---TAGGTTGGTTGG-TTTTTGGAT 488
Query 537 TGGTAGTGAGGTTTTTA-CTATAGGTAT-TGGATTTTTGTGGAGATGGATAGGCCTAGAC 594
||||||||||| |||| | ||| | || |||||||||||||||||||||||||||||||
Sbjct 489 TGGTAGTGAGG-GTTTACCAATA-GCATATGGATTTTTGTGGAGATGGATAGGCCTAGAC 546
Query 595 AAAATGATCATTTGGGTGTGAATAGGATTGGGAAAAATATCAGAAAGAGTCCTCTTCATC 654
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 547 AAAATGATCATTTGGGTGTGAATAAGATTGGGAGAAATATCAGAAAGAGTCCTCTGCATC 606
Query 655 AATCGACTTTCGCTGCCAGTACTAGCAACGGTGCCGCTCCAAGGCTTCAAACACAGCCTC 714
|| ||||||||||||||| | ||||||||| ||||| |||||| ||| ||||||||||
Sbjct 607 AACCGACTTTCGCTGCCAATGCTAGCAACGTTGCCGGGGCAAGGCCTCAGACACAGCCTC 666
Query 715 AGGTTTATAACATAAGCAAGAACGACTTTAGAAGTATTGTTCAGCAGCTAACGGGTTCTC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGTTTATAACATAAGCAAGAACGACTTTAGAAGTATTGTTCAGCAGCTAACGGGTTCTC 726
Query 775 CATCACGTGAAAGCCTTCCTCGGCCTCCTCAGAACAACTCGCTAAGGCCTCAGAATACAC 834
||||||||||| ||||||||||||||||||| |||||| ||| || ||||||||||||||
Sbjct 727 CATCACGTGAATGCCTTCCTCGGCCTCCTCAAAACAACCCGCCAAAGCCTCAGAATACAC 786
Query 835 GGTTGCAGCGGATCAGACCATCCCCCTTAACGCAGTTAAACCGGCCTGCGGTTCCTCTCC 894
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 787 GGTTGCAGCGGATCAGACCATCCCCCTTAACGCAGATAAACCGGCCTGCGGTTCCTCTCC 846
Query 895 CTTCCATGGCTCCGCCACAGTCTCATCCTCAGTTTGCTAGACAGCCTCCACACCAGCCAC 954
|| |||||||||| ||||| |||||||||||||||| |||||||| ||||| |||||| |
Sbjct 847 CTACCATGGCTCCTCCACAATCTCATCCTCAGTTTGTTAGACAGCATCCACCCCAGCCGC 906
Query 955 CTTTCCCACAAACCACACAACAACCAATGATGGGTCACAGGGACCAGTTTTGGTCTAATA 1014
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 907 CTTTCCCACAAAGCACACAACAACCATTGATGGGTCACAGGGACCAGTTTTGGTCTAATA 966
Query 1015 CAGCTGAGTCTCCCGTCTCAGAGTATATGCGTTATCTTCAAAGTTCACTTGGAGATTCAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CAGCTGAGTCTCCCGTCTCAGAGTATATGCGTTATCTTCAAAGTTCACTTGGAGATTCAG 1026
Query 1075 GACCCAATGCTAACCAAATGCAGCCAGGTCATGAGCAGCGGCCTTATATCCCAGGTCATG 1134
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1027 GACCCAATGGTAACCAAATGCAGCCAGGTCATGAGCAGCGGCCCTATATCCCAGGTCATG 1086
Query 1135 AGCAACGGCCATATGTGCCAGGTAATGAGCAGCAGCCATATATGCCAGGTAATGAGCAGC 1194
|||| ||||||||| | |||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 1087 AGCAGCGGCCATATATCCCAGGTCATGAGCAGCAGCCATATATCCCAGGTCTTGAGCAGC 1146
Query 1195 GGCCATATATCCCAGGTCATGAGCAGCGGTCATATATGCCAGctcaatct-cagtctcag 1253
|||||||||| |||||||||||||||||| ||||||| |||| ||| | ||| |||||
Sbjct 1147 GGCCATATATGCCAGGTCATGAGCAGCGGCCATATATCCCAGGTCA-TGAGCAGCCTCAG 1205
Query 1254 tctcaacctcaacctcaacctcaacctcagcaacATATGATGCCTGGACCGCAACCTCGA 1313
||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1206 TCTCAGTCTCAGCCTCAACCTCAACCTCAGCAACATATGATGCCTGGATCGCAACCTCGA 1265
Query 1314 ATGAACATGCAGGGCCCTCTTCAACCTAACCAGTATCTACCACCACCCGGGTTAGTTCCT 1373
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1266 ATGAATATGCAGGGCCCTCTTCAATCTAACCAGTATCTACCACCACCCGGGTTAGTTCCT 1325
Query 1374 AGCCCAGTGCCTCATAATCTTCCTTCTCCTCGGTTCAATGCTCCTGTACCTGTGACGCCT 1433
||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1326 AGCCCAGTGCCTCGTAATCTTCCTTCCCCTCGGTTCAATGCTCCTGTACCTGTCACGCCT 1385
Query 1434 ACTCAGCCCTCTCCCATGTTCAGTCAGATGTATGGTGGATTTCCTTCTCCTCGATATAAC 1493
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1386 ACTCAGCCCTCTCCCATGTTCAATCAGATGTATGGTGGATTTGCTTCTCCTCGATATAAC 1445
Query 1494 GGTTTTGGACCACTGCAGTCACCTACATCCCAATTTCTTCAACCATCTCCTACCGGTTAC 1553
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1446 GGTTTTGGACCACTGCAATCACCTACATCCCAATTTCTTCTACCATCTCCTACCGGTTAC 1505
Query 1554 CCGAATATGTTCTCTCCGAGATCGCCTTACCCATTGCTGTCACCAGGAGTTCAGTATCCT 1613
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1506 CCGAATATGTTCTCTCCGAGATCACCTTACCCATTGCTATCACCAGGAGTTCAGTATCCT 1565
Query 1614 CAACCACTTACCCCAAACTTCTCATTTTCACAAATTGCTCAACAAGGAAGTCTTGGACCC 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 CAACCACTTACCCCAAACTTCTCATTTTCACAAATTGCTCAACAAGGAAGTCTTGGACCC 1625
Query 1674 GGTGCAGGTCCAAGTCAAGGTCCTCCTCAGCCTCCTCCTTCTCCAGGGCTCATGTTCCCG 1733
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1626 GGTGCAGGTCCAGGTCAAGGTCCTCCTCAGCCTCCTCCTTCGCCAGGGCTCATGTTCCCG 1685
Query 1734 TTATCTCCATCCGGGTTCTTCCCCATGCCAAGTCCAAGATGGAATGATTACTAGGTGCTC 1793
||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1686 TTATCTCCATCTGGGTTCTTCCCCATCCCAAGTCCAAGATGGAGTGATTACTAGGTGCTC 1745
Query 1794 T-TTTTCTCTCCATCAGATTCATTAAATTAAGTAAATCGGATTATGTTTATTCAGGTTTC 1852
| |||||| || ||| |||| ||| |||| ||||||||| | |||| ||||||| || ||
Sbjct 1746 TCTTTTCTATCTATCCGATTTATTGAATTGAGTAAATCGCAGTATGGTTATTCAAGTCTC 1805
Query 1853 CTTAGGTTAGTCTGTACCTTTGAAAGAAGCTTAAAACTTCAGAGCCTACAGTGGAATAGA 1912
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CTTAGGTTAGTCTATAC-TTTGAAAGAAGCTTAAAACTTCAGAGCCTACAGTGGAATAGA 1864
Query 1913 CGCAGCAGAATAGATGCGTAAAACACTAAAGGAGCTTTTAGAAGAAAGAAAGATTTATAG 1972
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1865 CGCAGCAGAATAGATGCGTAAAACACTAAAGGAGCTTTTAGAAGCAAGGAAGATTTATAG 1924
Query 1973 GGGTTTTTT 1981
| |||||||
Sbjct 1925 GTGTTTTTT 1933
Score = 150 bits (81), Expect = 3e-35
Identities = 101/110 (92%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 2018 TTGGGATGATGATGATTACCTTTGTTTTTGTTTATCACAAACTTAGTTTTATCTTTGCTT 2077
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1932 TTGGGACGATGATGATTACCTTTGTTTTTGTTTATCACAAAATTAGTTTTATCTTTGCGT 1991
Query 2078 ACATT-GTACACATACTACAGACGAACTCAGTTCAATTTATATGATTTTT 2126
| ||| ||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1992 A-ATTTGTACACAGACTACAGATGAACTC--TTCAATTTATATGATTTTT 2038
Score = 115 bits (62), Expect = 1e-24
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1151 GCCAGGTAATGAGCAGCAGCCATATATGCCAGGTAATGAGCAGCGGCCATATATCCCAGG 1210
||||||| ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 1049 GCCAGGTCATGAGCAGCGGCCCTATATCCCAGGTCATGAGCAGCGGCCATATATCCCAGG 1108
Query 1211 TCATGAGCAGCGGTCATATATGCCAG 1236
||||||||||| | ||||||| ||||
Sbjct 1109 TCATGAGCAGCAGCCATATATCCCAG 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5