BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35240.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952606 jgi|Araly1|952606|scaffold_94100001.1 1144 0.0
Ahg934136 jgi|Araly1|934136|scaffold_402124.1 1144 0.0
> Ahg952606 jgi|Araly1|952606|scaffold_94100001.1
Length=746
Score = 1144 bits (619), Expect = 0.0
Identities = 707/750 (94%), Gaps = 4/750 (1%)
Strand=Plus/Plus
Query 16 CATCGCCGGGAAACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 75
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATCGCCGGG-AACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 59
Query 76 TGCGTCGCTAAGCGTTTCTTTTCCACCTCCAATGCCGTCGCCTCTCCTTCTCCGCTTCCT 135
|| ||||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||
Sbjct 60 CGCATCGCTAATCGTTTATTCTCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCT 119
Query 136 TCTCATCTCATCTCTCGTCGATTCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 195
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCATCTCATCTCTCGTCGATCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 179
Query 196 GCTTTGACCCGCTTCACAACGATCCGGACCCGGATGGATAGGTCTGGCGGCTCATATTCG 255
||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 180 GCTTTGACCCGTTTCACGACGATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCG 239
Query 256 CCGCTTAAATCCGGATCAAACTTCAGCGATCGACCACCCACTGAAATGGCACCTCTATTT 315
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 240 CCGCTTAAATCTGGATCGAACTTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTT 299
Query 316 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGAGGTGAAAATGCT 375
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 300 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGCGGCGAAAATGCG 359
Query 376 CAGAAACAGCAAATGATCGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 435
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAAACAGCAAATGATTGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 419
Query 436 GAAGAGGCTAGAAAGAAGATCTATAATGTTTCGTGTGAGAGGTATTTTGGGTTTGGCTGT 495
||||| |||| |||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 420 GAAGAAGCTAAAAAGAAGATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGT 479
Query 496 GAGATTGATGAGGAGACATCAAACAAACTCGAAGGACTTCCTGGTGTTCTGTTCGTGCTT 555
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 480 GAGATTGATGAGGAGACATCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT 539
Query 556 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAACTGTTTGTGAATGGA 615
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 540 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGA 599
Query 616 GAAGTAGTTCCTCGTCCACCAGAGAGACAGAGGAGGATGGTGGAGTTAACGAATCAAAGA 675
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GAAGTAGTTCCTCGGCCACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGA 659
Query 676 GGGTCGGATAAACCAAAGTACCATGACCGAATCAGAAATGTCCGACGGAGGGAGAACATG 735
|| ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 660 GGATCGGATAAACCGAAGTACCATGACCGAACCAGAAATGTCCGACGGAGAGAGAACATG 719
Query 736 CGTTGACTCTTATTATTCTCAGACTTTACG 765
|||||||||||||| |||||||| ||||
Sbjct 720 CGTTGACTCTTATT---CTCAGACTCTACG 746
> Ahg934136 jgi|Araly1|934136|scaffold_402124.1
Length=746
Score = 1144 bits (619), Expect = 0.0
Identities = 707/750 (94%), Gaps = 4/750 (1%)
Strand=Plus/Plus
Query 16 CATCGCCGGGAAACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 75
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATCGCCGGG-AACCACACCAGTCTCAATGGCGAAAACTCTATCCCGATCCACCGCCTCA 59
Query 76 TGCGTCGCTAAGCGTTTCTTTTCCACCTCCAATGCCGTCGCCTCTCCTTCTCCGCTTCCT 135
|| ||||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||
Sbjct 60 CGCATCGCTAATCGTTTATTCTCCACCTCCAAAGCCGCCGCCTCTCCTTCTCCGCTTCCT 119
Query 136 TCTCATCTCATCTCTCGTCGATTCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 195
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCATCTCATCTCTCGTCGATCCTCACCGACGATCTTCCACGCCGTCGGATACATCCCA 179
Query 196 GCTTTGACCCGCTTCACAACGATCCGGACCCGGATGGATAGGTCTGGCGGCTCATATTCG 255
||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 180 GCTTTGACCCGTTTCACGACGATCCGGACCCGAATGGATAGGTCCGGTGGCTCATATTCG 239
Query 256 CCGCTTAAATCCGGATCAAACTTCAGCGATCGACCACCCACTGAAATGGCACCTCTATTT 315
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 240 CCGCTTAAATCTGGATCGAACTTCAGCGATCGACCACCCACTGAAATGGCGCCGCTATTT 299
Query 316 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGAGGTGAAAATGCT 375
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 300 CCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGCGGCGAAAATGCG 359
Query 376 CAGAAACAGCAAATGATCGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 435
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAAACAGCAAATGATTGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAG 419
Query 436 GAAGAGGCTAGAAAGAAGATCTATAATGTTTCGTGTGAGAGGTATTTTGGGTTTGGCTGT 495
||||| |||| |||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 420 GAAGAAGCTAAAAAGAAGATCTACAATGTTTCATGCGAGAGGTATTTTGGGTTTGGCTGT 479
Query 496 GAGATTGATGAGGAGACATCAAACAAACTCGAAGGACTTCCTGGTGTTCTGTTCGTGCTT 555
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 480 GAGATTGATGAGGAGACATCAAACAAACTTGAAGGACTTCCTGGTGTTCTATTCGTGCTT 539
Query 556 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAACTGTTTGTGAATGGA 615
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 540 CCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAGCTGTTTGAGAACGGA 599
Query 616 GAAGTAGTTCCTCGTCCACCAGAGAGACAGAGGAGGATGGTGGAGTTAACGAATCAAAGA 675
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GAAGTAGTTCCTCGGCCACCGGAGAGACAGAGGAGGATGGTGGAGTTAACGACTCAAAGA 659
Query 676 GGGTCGGATAAACCAAAGTACCATGACCGAATCAGAAATGTCCGACGGAGGGAGAACATG 735
|| ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 660 GGATCGGATAAACCGAAGTACCATGACCGAACCAGAAATGTCCGACGGAGAGAGAACATG 719
Query 736 CGTTGACTCTTATTATTCTCAGACTTTACG 765
|||||||||||||| |||||||| ||||
Sbjct 720 CGTTGACTCTTATT---CTCAGACTCTACG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5