BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35250.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345260 jgi|Araly1|345260|fgenesh1_pg.C_scaffold_4001602 1402 0.0
Ahg901368 jgi|Araly1|901368|Al_scaffold_0004_2018 1230 0.0
Ahg952546 jgi|Araly1|952546|scaffold_87100002.1 701 0.0
Ahg887756 jgi|Araly1|887756|Al_scaffold_0871_1 579 2e-164
> Ahg345260 jgi|Araly1|345260|fgenesh1_pg.C_scaffold_4001602
Length=1029
Score = 1402 bits (759), Expect = 0.0
Identities = 944/1034 (91%), Gaps = 10/1034 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
|||||||||| |||||| ||| |||||||||||||||||||||||| ||||||| ||| |
Sbjct 1 ATGGCATTACATCTAGCGTTAGGTCTATGTGTTTATCTGCTGTTTATACAAGGTTCACTG 60
Query 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 61 GGAAACATTGATGATTTTGATTGTGTTGAAATATACAAACAACCGGCTTTTCAACATCCA 120
Query 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
|||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 121 TTGTTGAAAGATCACAAGATACAGGAAACATTCAGCCTGGATGGAATTATTGAAAGAAGC 180
Query 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTAAGACAAAGA 240
Query 241 AATGTATCCAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAACA 300
|||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 241 AATGAATCCAAGAGCGTTCATTTGAATACAGCCGAATATTCTGGTCAACATTTCGCAACA 300
Query 301 ATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCAT 360
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 ATTGAGACCATGTTAGATGGAAGTATATATTGGGGAGCAGAAGCTGATATAAGTATTCAT 360
Query 361 GATTTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGACCT 420
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATTTAAAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGACCT 420
Query 421 CCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTGAT 480
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 421 CCAGATCAACTCAATAGTATACAAGCTGGTTGGGCAGTCCATCCAAGATTGTACGGTGAT 480
Query 481 AGTGTCACACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGGTGCTAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AGTGTCACACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGTTGCTAC 540
Query 541 AATACACAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATTCAAGAATTGGAAGCGGA-TT 599
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||
Sbjct 541 AATACGCAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATCCAAGACTTGGAAG-GGAATT 599
Query 600 TTGGGGAACATCTGTCTATGGTAAAACAAGTCTTACGTTTAAATTGCAAGTTTTTCAGGA 659
|||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||| ||
Sbjct 600 TTGGGGAACATCTGTCTACGGTCAATTAAGCCTTACGTTTAAATTACAAGTTTTTCAAGA 659
Query 660 TGGCTTCAGCGGAAATTGGGCACTTAAAATGTTTGATGAAGTCATTGGTTATTGGCCTAA 719
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 660 TGGTTTCAGCGGAAATTGGGGACTTAAAATGTTTAATGAAGTCATTGGTTATTGGCCCAA 719
Query 720 AGAGTTATTTTCACATTTGAATAATGGAGCTTCTCTAGTAAGATATGGAGGAAATACTT- 778
|||||||||| |||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 720 AGAGTTATTTCCACACTTAAATAATGGAGCTTCTCTAGTGAGATATGGAGGAAACACTTA 779
Query 779 TTGAATCTCCCGATGGAATCAGTCCTCCAATGGGCAATGGGTTTTTTCCAGTTGCGGACT 838
|| | |||||||| ||| | ||||| || ||||| ||||| | || ||||||||| ||||
Sbjct 780 TTTA-TCTCCCGACGGATTGAGTCCCCCTATGGGTAATGGATATTATCCAGTTGCAGACT 838
Query 839 TTAAAAAGACGGCACATTTTAATAACGTCGTTG-TTATAAACTCGGACTATAAAAGAGTT 897
| |||||||| |||||||||||||| ||||| | |||||||||| | || |||||||||
Sbjct 839 TCAAAAAGACAGCACATTTTAATAATGTCGT-GATTATAAACTCACAATACAAAAGAGTT 897
Query 898 TACATTGAAGGTAGGAAAATACGACTTTATG-TCGATTCCTATA-ATTGTTTTAGGGCGA 955
|| |||||| |||||||||| ||| ||||| | |||||||||| || ||||||||| ||
Sbjct 898 TATGTTGAAGATAGGAAAATAAGACGTTATGCT-GATTCCTATAGAT-GTTTTAGGGTGA 955
Query 956 CATATTGGGGTTATACCAAATCTACAGGAGAAGCCTTTTCATTTGGAGGACCAGGTGGAA 1015
|||||||||||||||||||||| || |||| ||| ||||| |||||||||||||| ||||
Sbjct 956 CATATTGGGGTTATACCAAATCCACCGGAGTAGCTTTTTCGTTTGGAGGACCAGGAGGAA 1015
Query 1016 ATTGTGGTTTTTGA 1029
|||||||| |||||
Sbjct 1016 ATTGTGGTGTTTGA 1029
> Ahg901368 jgi|Araly1|901368|Al_scaffold_0004_2018
Length=1029
Score = 1230 bits (666), Expect = 0.0
Identities = 919/1040 (88%), Gaps = 22/1040 (2%)
Strand=Plus/Plus
Query 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
|||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCATTACATCTAGCGTTAGGTCTATGTGTATATCTGCTGTTTACACAAGGTGCACAG 60
Query 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
||||||| |||||||||||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 61 GGAAACATTGATGATTTTGATTGTGTTGAGATATACAAACAACCGGCTTTCAAACATCCA 120
Query 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTGTTAAAAAATCACAAGATTCAGGAAACATTCAGCCTAGATGGAAATATTGAAAGAAGC 180
Query 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
||||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||| ||
Sbjct 181 AACAAATATAAAACCAAAGAGCATTGTCCAAAAGGAACAGTTCCAATTTTAAGACAAGGA 240
Query 241 AATGTATC-CAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAAC 299
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 241 AATGAATCTCAA-AGCGTTCATCTGAATACAGCCGAGTATTCTGGTCAACATTTTGCAAC 299
Query 300 AATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCA 359
||||||||| | |||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct 300 AATTGAGACTACGTTAGATGGAAGTATCTATCGGGGAACTGAAGCTGAAATAAGTGTTCA 359
Query 360 TGAT-TTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
|||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TGATCTT-AAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
Query 419 CTCCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTG 478
||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 419 CTCGAGCTCAACTCAATAGTATACAAGCTGGTTGGGCAGTACATCCAAGATTATACGGTG 478
Query 479 ATAGTGTCAC-ACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGGTGC 537
|||||||||| | |||||||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 479 ATAGTGTCACGA-GATTTACAATCTATTGGACTGGAGATGGTTACCAAAAAACAGGGTGC 537
Query 538 TATAATACACAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATTCAAGAATTGGAA-GCGG 596
||||||| ||||||||||||||||||||||||||||||||| | | | |||||| | ||
Sbjct 538 TATAATATGCAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATCCTACACTTGGAAAG-GG 596
Query 597 ATTTTGGGGAACATCTGTCTATGGTAAAACAAGTCTTACGTTTAAATTGCAAGTTTTTCA 656
|||| ||||| |||||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 597 ATTTGGGGGATCATCTGCCTATGGTCAAACAAGTCTTACGTTTAAATTGCAAATTTTCCA 656
Query 657 GGATGGCTTCAGCGGAAATTGGGCACTTAAAATGTTTGATGAAGTCATTGGTTATTGGCC 716
|||||| |||||||||||||||| ||| ||||||| | | ||| | ||||||||||||||
Sbjct 657 GGATGGATTCAGCGGAAATTGGGGACTGAAAATGTCTAACGAAATAATTGGTTATTGGCC 716
Query 717 TAAAGAGTTATTTTCA-CATTTGAA-TAATGGAGCTTCTCTAGTAAGATATGGAGGAAAT 774
|||||||||||| || || || || |||||||||||||||| ||||||||||||| ||
Sbjct 717 AAAAGAGTTATTT-CAGCACTT-AAGTAATGGAGCTTCTCTAATAAGATATGGAGGGAAC 774
Query 775 ACTT-TTGAATCTCCCGATGGAATCAGTCCTCCAATGGGCAATGGGTTTTTTCCAGTTGC 833
|||| || | |||||||| ||| | |||||||||||||| ||||| |||||| ||| |
Sbjct 775 ACTTATTTA-TCTCCCGACGGATTTAGTCCTCCAATGGGTAATGGACATTTTCCCGTTCC 833
Query 834 GGACTTTAAAAAGACGGCACATTTTAATAACGTCGTTG-TTATAAACTCGGACTATAAAA 892
||||| |||||||||||||||||||| ||| | | | ||||||||||||||||||||
Sbjct 834 AGACTTCAAAAAGACGGCACATTTTAAAAACATAGG-GATTATAAACTCGGACTATAAA- 891
Query 893 G-AGTTTACATTGAAGGTAGGAAAATACGACTTTATGTCG-ATTCCTATAATTGTTTTAG 950
| || ||| ||||| | ||||||| || ||||||||| || ||||| ||| ||| |||||
Sbjct 892 GCAGATTATATTGATGATAGGAAAGTAAGACTTTATG-CGGATTCCAATAGTTGCTTTAG 950
Query 951 GGCGACATATTGGGGTTATACCAAAT-CTACAGGAGAAGCCTTTTCATTTGGAGGACCAG 1009
|| | ||||||||||||||||||||| | || ||| |||| ||||| |||||||||||||
Sbjct 951 GGTGTCATATTGGGGTTATACCAAATTC-ACCGGAAAAGCTTTTTCGTTTGGAGGACCAG 1009
Query 1010 GTGGAAATTGTGGTTTTTGA 1029
||||||| |||||| |||||
Sbjct 1010 GTGGAAAATGTGGTATTTGA 1029
> Ahg952546 jgi|Araly1|952546|scaffold_87100002.1
Length=565
Score = 701 bits (379), Expect = 0.0
Identities = 473/518 (91%), Gaps = 7/518 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
|||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 21 ATGGCATTACATCTAGCGTTAGGTCTATGTGTATATCTGCTGTTTACACAAGGTGCACAG 80
Query 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
||||||| |||||||||||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 81 GGAAACATTGATGATTTTGATTGTGTTGAGATATACAAACAACCGGCTTTCAAACATCCA 140
Query 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 141 TTGTTAAAAAATCACAAGATTCAGGAAACATTCAGCCTAGATGGAAATATTGAAAGAAGC 200
Query 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
||||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||| ||
Sbjct 201 AACAAATATAAAACCAAAGAGCATTGTCCAAAAGGAACAGTTCCAATTTTAAGACAAGGA 260
Query 241 AATGTATC-CAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAAC 299
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 261 AATGAATCTCAA-AGCGTTCATCTGAATACAGCCGAGTATTCTGGTCAACATTTTGCAAC 319
Query 300 AATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCA 359
||||||||| | |||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct 320 AATTGAGACTACGTTAGATGGAAGTATCTATCGGGGAACTGAAGCTGAAATAAGTGTTCA 379
Query 360 TGAT-TTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
|||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 380 TGATCTT-AAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 438
Query 419 CTCCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTG 478
||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 439 CTCGAGCTCAACTCAATAGTATACAAGCTGGTTGGGCAGTACATCCAAGATTATACGGTG 498
Query 479 ATAGTGTCAC-ACGATTTACAATATATTGGACTG-GAG 514
|||||||||| | |||||||||| |||||||||| |||
Sbjct 499 ATAGTGTCACGA-GATTTACAATCTATTGGACTGTGAG 535
> Ahg887756 jgi|Araly1|887756|Al_scaffold_0871_1
Length=567
Score = 579 bits (313), Expect = 2e-164
Identities = 350/368 (95%), Gaps = 2/368 (1%)
Strand=Plus/Plus
Query 145 GAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGCAACAAATATAATACAAAAGAGCAT 204
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACATTCAGCCTGGATGGAATTATTGAAAGAAGCAACAAATATAATACAAAAGAGCAT 60
Query 205 TGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGAAATGTATCCAAGGGCGTTCATTTG 264
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 61 TGTCCAAAAGGAACCGTTGCAATTTTAAGACAAAGAAATGAATCCAAGAGCGTTCATTTG 120
Query 265 AATACCGCCGAGTATTCTGGTCAACATTTTGCAACAATTGAGACCATTTTAGATGGAAGT 324
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 AATACAGCCGAATATTCTGGTCAACATTTCGCAACAATTGAGACCATGTTAGATGGAAGT 180
Query 325 ATATATCGGGGAGCAGAAGCTGATATAAGTATTCATGATTTGAAACTGCAAAATAACCAA 384
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 181 ATATATCGGGGAGCAGAAGCTGATATAAGTATTCATGATTTAAAATTGCAAAATAATCAA 240
Query 385 TACAGTAAAAGTCAAATATGGTTAGAGAATGGACCTCCAGGTCAACTCAATAGTATACAA 444
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TACAGTAAATGTCAAATATGGTTAGAGAATGGACCTCCAGATCAACTCAATAGTATACAA 300
Query 445 GCTGGTTTGG-CAGTACATCCAAGATTGTACGGTGATAGTGTCACACGATTTACAATATA 503
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTGGTT-GGACAGTCCATCCAAGATTGTACGGTGATAGTGTCACACGATTTACAATATA 359
Query 504 TTGGACTG 511
||||||||
Sbjct 360 TTGGACTG 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5