BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35260.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497524 jgi|Araly1|497524|fgenesh2_kg.716__1__AT2G35260.1 1834 0.0
Ahg901370 jgi|Araly1|901370|Al_scaffold_0004_2020 1626 0.0
Ahg934138 jgi|Araly1|934138|scaffold_402126.1 169 7e-41
> Ahg497524 jgi|Araly1|497524|fgenesh2_kg.716__1__AT2G35260.1
Length=1366
Score = 1834 bits (993), Expect = 0.0
Identities = 1291/1424 (91%), Gaps = 64/1424 (4%)
Strand=Plus/Plus
Query 1 ACAAGCACTTAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGCCAGAG 60
||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACACGCACATAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGTCAGAG 60
Query 61 ATCACCAATAAGT-GTTGTAG-TTTCCGGTTACTTCGAATAACCTTCAATGGAGCTTCCG 118
||||| | | ||| || ||| |||||| |||| |||| |||||| |||||||||||||
Sbjct 61 ATCACGACTGAGTACTT-TAGTTTTCCGATTACCTCGAGCAACCTTAAATGGAGCTTCCG 119
Query 119 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGCTCTTCTTCTTCT 178
|||||||||||||||||||||||||||||||| ||||||||| | | | | | ||||||
Sbjct 120 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T--T-TAC-TCTTCT 173
Query 179 TCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTTAAAATTGAGATT 237
|| |||||||||||||||| |||||| ||||||||||||||||| || | || |||||||
Sbjct 174 TCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTCAGAA-TGAGATT 232
Query 238 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGTGAAGGGAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 233 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGCGAAGGGAT 292
Query 298 TGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGGCAGATTTGCTGG 357
|||||| |||| | | ||| ||| | | | | ||||||||||
Sbjct 293 CGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G--GATTTGCTGG 325
Query 358 TACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCACCACCGTTGATTT 417
||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 326 TACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCACCACCGTTGATTT 385
Query 418 TCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAATCGGAATATATGG 477
|||||||||||||||||| ||||||||||||||||||||||| |||||| | ||
Sbjct 386 TCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAATC-G------CGG 438
Query 478 AGCAATGGC-TGTAGCAGGAAGATTTATAT-GTTCAGTGACTGGAATTGATTCATCTGGT 535
|| | | | || | |||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 439 AG---T--CAT-TA-CTGGAAGATTCATATGGTTCGGTGACTGGAATTGATTCATCTGGT 491
Query 536 GGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATC 595
|||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 492 GGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAACACCACCAATC 551
Query 596 ATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCC 655
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 552 ATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCACGCTCGGGCC 611
Query 656 ATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 715
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 612 ATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 671
Query 716 TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 775
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 672 TTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 731
Query 776 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 791
Query 836 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCT 895
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 792 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGCCTTTGCAGCT 851
Query 896 GTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGACCCG 955
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 852 GTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCCAAAGGACCCG 911
Query 956 ACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCA 1015
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 ACATACATTGTTGCCCCGGTTTTAAGGTCACGCCGAGATGATTTTAAGAAGCTTTTGTCA 971
Query 1016 GCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTA 1075
|||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 972 GCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCCCTACTCGAAGGACTCTTA 1031
Query 1076 GCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCACCGATGATGACG 1135
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1032 GCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCACCGATGATGACG 1091
Query 1136 CATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTCACGATCACCGG 1195
|||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1092 CATGGTATATACTCAGCAGTCATATTAGGACATGGGCTGTGGAAAATTCATGATCACCGG 1151
Query 1196 AGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATAAGTTGATTTAA 1255
||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 1152 AGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATAAGTTGATTTAA 1211
Query 1256 ATCAAATATAGATGGTTTAATTGGTTGGGGGGTGGATTTGTGTGTAtttttttGGTATGG 1315
||||| | |||||| ||||||| |||||| | |||||||||||||||||||||| |||||
Sbjct 1212 ATCAACTCTAGATG-TTTAATTAGTTGGGAG-TGGATTTGTGTGTATTTTTTTG-TATGG 1268
Query 1316 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTACAT 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1269 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTGCAT 1328
Query 1376 GATACAGTAGATAATTA-ATTACATATACGTACATATATAATAT 1418
| ||||||| ||||| || | ||||||||||||||||||||
Sbjct 1329 -A--CAGTAGAAAATTACAT-A--TATACGTACATATATAATAT 1366
> Ahg901370 jgi|Araly1|901370|Al_scaffold_0004_2020
Length=1116
Score = 1626 bits (880), Expect = 0.0
Identities = 1067/1151 (93%), Gaps = 37/1151 (3%)
Strand=Plus/Plus
Query 107 ATGGAGCTTCCGTTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGC 166
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1 ATGGAGCTTCCGCTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T-- 56
Query 167 TCTTCTTCTTCTTCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTT 225
| | | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 57 T-TAC-TCTTCTTCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTC 114
Query 226 AAAATTGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 285
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AGAA-TGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 173
Query 286 CAGTGAAGGGATTGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGG 345
||| |||||||| |||||| |||| | | ||| ||| | | | |
Sbjct 174 CAGCGAAGGGATCGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G 208
Query 346 CAGATTTGCTGGTACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCAC 405
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||
Sbjct 209 --GATTTGCTGGTACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCAC 266
Query 406 CACCGTTGATTTTCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAAT 465
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 267 CACCGTTGATTTTCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAAT 326
Query 466 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTTATATGTTCAGTGACTGGAATTGA 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 327 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTCATATGTTCAGTGACTGGAATTGA 386
Query 526 TTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAAC 585
|||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 387 TTCATCTGGTGGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAAC 446
Query 586 ACCACCAATCATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCA 645
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 447 ACCACCAATCATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCA 506
Query 646 TGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTC 705
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 507 CGCTCGGGCCATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTC 566
Query 706 CCCATGGCAGTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCG 765
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 567 CCCATGGCAGTTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCG 626
Query 766 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 686
Query 826 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 687 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGC 746
Query 886 CTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCC 945
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 747 CTTTGCAGCTGTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCC 806
Query 946 AAAAGACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGC-GAGATGATTTTAAGA 1004
||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 807 AAAGGACCCGACATACATTGTTGCCCCGGTTTTAAGGTCACG-CAGAGATGATTTTAAGA 865
Query 1005 AGCTTTTGTCAGCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTG 1064
||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 866 AGCTTTTGTCAGCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCTCTACTCG 925
Query 1065 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCAC 1124
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 926 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCAC 985
Query 1125 CGATGATGACGCATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTC 1184
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 986 CGATGATGACGCATGGTATATACTCGGCAGTCATATTAGGACATGGGCTGTGGAAAATTC 1045
Query 1185 ACGATCACCGGAGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATA 1244
| |||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1046 ATGATCACCGGAGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATA 1105
Query 1245 AGTTGATTTAA 1255
|||||||||||
Sbjct 1106 AGTTGATTTAA 1116
> Ahg934138 jgi|Araly1|934138|scaffold_402126.1
Length=244
Score = 169 bits (91), Expect = 7e-41
Identities = 97/100 (97%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 519 GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT 179
Query 579 ATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGA 618
|||||||||||||||||||||||||||||| | | |||||
Sbjct 180 ATGCAACACCACCAATCATGGCTCTTCTCTCCGTTCTCGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5