BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35270.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482492 jgi|Araly1|482492|fgenesh2_kg.4__1552__AT2G35270.1 1325 0.0
Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1 342 2e-93
> Ahg482492 jgi|Araly1|482492|fgenesh2_kg.4__1552__AT2G35270.1
Length=864
Score = 1325 bits (717), Expect = 0.0
Identities = 817/865 (94%), Gaps = 8/865 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTCTCGATCTAGGCACAACTTCTCGCTACGTCCACAACGTCGATGGTGGCGGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTGGTCTCGATCTAGGCACAACTTCTCGCTACGTCCACAACGTTGATGGTGGCGGC 60
Query 61 GGCGGACAGTTCACCACCGACAACCACCACGAAGATGACGGTGGCGCTGGAGGAAACCAC 120
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GGCGGCCAGTTCACCACCGACAACCACCACGAGGATGACGGTGGCGCTGGAGGAAACCAT 120
Query 121 CATCATCACCATCATAATCATAATCACCATCAAGGTTTAGATTTAATAGCTTCTAATGAT 180
||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCACCATCATAATAATCACAATCACCATCAAGGTTTAGATTTAATAGCTTCTAATGAT 180
Query 181 AACTCTGGACTAGGCGGCGGTGGAGGAGGAGGGA-GCGGTGACCTCGTCATGCGTCGGCC 239
|||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||
Sbjct 181 AACTCTGGACTAGGCGGCGGTGGAGGTGG-GGGAAGCGGTGACCTCGTCATGCGCCGGCC 239
Query 240 ACGTGGCCGTCCAGCTGGATCGAAGAACAAACCGAAGCCGCCGGTGATTGTCACGCGCGA 299
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 240 ACGTGGCCGTCCAGCTGGATCAAAGAACAAACCGAAGCCGCCGGTGATCGTCACGCGCGA 299
Query 300 GAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTTGGAAGTGGCTGCGACGTTTTCGA 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTCGGAAGTGGCTGCGACGTTTTCGA 359
Query 360 ATGTATCTCCACTTACGCTCGTCGGAGACAGCGCGGGATTTGCGTTTTATCCGGGACGGG 419
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||
Sbjct 360 GTGTATCTCCACTTACGCTCGCCGGAGACAGCGAGGAATTTGCGTTTTGTCCGGAACGGG 419
Query 420 AACCGTCACTAACGTCAGCATCCGTCAGCCTACGGCGGCCGGAGCTGTTGTGACTCTGCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACCGTCACTAACGTCAGCATCCGTCAGCCTACGGCGGCCGGAGCTGTTGTGACTCTGCG 479
Query 480 GGGTACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTTCCGCCACCTGCTCCTCCAGG 539
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 480 CGGAACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTCCCGCCGCCTGCTCCTCCAGG 539
Query 540 GGCGACTAGCTTGACGATATTCCTCGCTGGAGCTCAAGGACAGGTCGTCGGAGGTAACGT 599
|||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||
Sbjct 540 GGCGACCAGCTTGACGATATTTCTCGCCGGAGCTCAGGGACAGGTCGTCGGAGGCAACGT 599
Query 600 AGTTGGTGAGTTAATGGCGGCGGGGCCGGTAATGGTCATGGCAGCGTCTTTTACAAACGT 659
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 AGTTGGTGAGTTGATGGCGGCGGGGCCGGTAATGGTCATGGCGGCGTCTTTTACAAACGT 659
Query 660 GGCTTACGAAAGGTTGCCTTTGGACGAGCATGAGGAGCACTTGCA-----AA-GTGGCGG 713
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 660 GGCTTACGAAAGGTTGCCTTTGGACGAGCATGAGGAGCACTTGCAGGTTCAAAGTGGTGG 719
Query 714 CGGCGGAGGTGGAGGGAATATGTACTCGGAAGCCACTGGCGGTGGCGGAGGGTTGCCTTT 773
||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 720 CGGCGGAGGCGGGGGGAATATGTACTCGGAAGCAACTGGCGGTGGCGGAGGATTGCCGTT 779
Query 774 CTTTAATTTGCCGATGAGTATGCCTCAGATTGGAGTTGAAAGTTGGCAGGGGAATCACGC 833
|||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||
Sbjct 780 CTTTAATTTGCCGATGAGTATGCCCCAGATGGGAGTCGAAAGTTGGCCGGGGAATCACGC 839
Query 834 CGGCGCCGGTAGGGCTCCGTTTTAG 858
|||||||||||||||||||||||||
Sbjct 840 CGGCGCCGGTAGGGCTCCGTTTTAG 864
> Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1
Length=1362
Score = 342 bits (185), Expect = 2e-93
Identities = 357/440 (81%), Gaps = 12/440 (3%)
Strand=Plus/Plus
Query 232 CGTCGGCCACGTGGCCGTCCAGCTGGATCGAAGAACAAACCGAAGCCGCCGGTGATTGTC 291
||||| ||||||||| | ||| | |||||||||||||||||||| || ||||||||| ||
Sbjct 489 CGTCGTCCACGTGGCAGACCACCGGGATCGAAGAACAAACCGAAACCTCCGGTGATTATC 548
Query 292 ACGCGCGAGAGCGCAAACACTCTTAGGGCTCACATTCTTGAAGTTGGAAGTGGCTGCGAC 351
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 549 ACGCGCGAGAGCGCAAACACTCTTAGAGCTCACATTCTTGAAGTAACAAACGGCTGCGAC 608
Query 352 GTTTTCGAATGTATCTCC-ACTTACGCTCGTCGGAGACAGCGCGGGATTTGCGTTTT-AT 409
|||||||| || | | | ||||| ||||||||||| ||||| ||||| |||||| | |
Sbjct 609 GTTTTCGACTGCGT-TGCGACTTATGCTCGTCGGAGGCAGCGAGGGATCTGCGTTCTGAG 667
Query 410 CCGGGA-CGGGAACCGTCACTAACGTCAGCATCCGTCAGCC-TACGGCGGCCGGAGCTGT 467
| || | ||||| | ||||| ||||||||||| |||||||| | | ||||| ||||| ||
Sbjct 668 C-GGTAGCGGGA-CGGTCACGAACGTCAGCATACGTCAGCCAT-CTGCGGCTGGAGCGGT 724
Query 468 TGTGACTCTGCGGGGTACTTTTGAGATTCTTTCCCTCTCCGGATCTTTTCTTCCGCCACC 527
|||||| || | || || || ||||||||||| |||||||| || |||||||| || ||
Sbjct 725 TGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTCGTTTCTTCCTCCTCC 784
Query 528 TGCTCCTCCAGGGGCGACTAGCTTGACGATATTCCTCGCTGGAGCTCAAGGACAGGTCGT 587
|||||||| || || ||||| ||||| || ||| | || |||| ||||| ||||| ||
Sbjct 785 GGCTCCTCCCGGAGCAACTAGTTTGACAATTTTCTTAGCCGGAGGACAAGGTCAGGTGGT 844
Query 588 CGGAGGTAA-CGTAGTTGGTGAG-TTAATGGCGGCGGGGCCGGTAATGGTCATGGCAGCG 645
|||||| || ||| || |||||| ||| |||||| || ||||| || || || |||||
Sbjct 845 CGGAGG-AAGCGTTGTGGGTGAGCTTAC-GGCGGCTGGACCGGTGATTGTAATTGCAGCT 902
Query 646 TCTTTTACAAACGTGGCTTA 665
|| ||||| || || |||||
Sbjct 903 TCGTTTACTAATGTTGCTTA 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5