BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35290.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482493 jgi|Araly1|482493|fgenesh2_kg.4__1553__AT2G35290.1         691    0.0  


> Ahg482493 jgi|Araly1|482493|fgenesh2_kg.4__1553__AT2G35290.1
Length=481

 Score =  691 bits (374),  Expect = 0.0
 Identities = 454/491 (92%), Gaps = 12/491 (2%)
 Strand=Plus/Plus

Query  20   CTTCTCTCAAATGGGTTGTCTGATTTCTCCTGTAATGAAACTCCGTCGTCTCTCCTCAGC  79
            ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    CTTCTCTCAAATGGGTTGTTTGATTTCTCCTGTCATGAAACTCCGTCGTCTCTCCTCAGC  60

Query  80   CGACTCGCGGCGATTTGCATACCGGAATCTCGCCGAGAATATGGAAGATCCAGTCATAAG  139
            |||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct  61   CGACTCACGGCGGTTTGCATACCGGAATCTCACCGAAAATATGGAAGATCCAGTCATAAG  120

Query  140  GGTGGTGGTAGGGAAGGAGAAGAAGGAGTTCATGGTCGAACCGTATGTACTCGAAGAGTA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTGGTGGTAGGGAAGGAGAAGAAGGAGTTCATGGTCGAACCGTATGTACTCGAAGAGTA  180

Query  200  CCCGTTCAGAGTCTTGATAGGTTCAGCTAAGGATCGTGCCAAGAACCGGTTAAACCGGAC  259
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCCTTTTAGAGTCTTGATAGGTTCAGCTAAGGATCGTGCCAAGAACCGGTTAAACCGGAC  240

Query  260  CGGTAGAGTGGTGTGGCTTGATCATGTCGACTCGATCTTATTTGAGCACTTGCTGTGGCT  319
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  241  CGGTAGAGTGGTGTGGCTTGATCATGTCGACTCGATCTTGTTTGAGCACTTGCTGTGGCT  300

Query  320  TCTTCGGAACGATGCCTCTACGTTTTCGGATTTGGATGTTCTCGAGATCATTGAATTCTA  379
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  301  TCTTCGGAACGATGCCTCTACGTTTTCGGATTTGGATGTTGTCGAGATCATTGATTTCTA  360

Query  380  TGCTCAAGATTGTTAGGGAAAGAAATGGATTAACAGTGTGCTTTTACAGTTTTACTTTTC  439
            |||||||||||||||||| | |||||||| |||||||||| ||   |  ||||| |    
Sbjct  361  TGCTCAAGATTGTTAGGGGA-GAAATGGAATAACAGTGTG-TT---C--TTTTAGTGA--  411

Query  440  AGTGAAGATATGATCCATTCAAAAAACTGTTTTTACT-GCGAGCAATTGTCGGCTAGATT  498
            ||  ||||||||| ||||||| | |||| |||||  | | ||| ||||||||||||| ||
Sbjct  412  AG--AAGATATGAGCCATTCATATAACTTTTTTTTTTTGGGAGTAATTGTCGGCTAGGTT  469

Query  499  TAATTGGGCTA  509
            |||||||||||
Sbjct  470  TAATTGGGCTA  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5