BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35300.1

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482494 jgi|Araly1|482494|fgenesh2_kg.4__1554__AT2G35300.1         765    0.0  


> Ahg482494 jgi|Araly1|482494|fgenesh2_kg.4__1554__AT2G35300.1
Length=473

 Score =  765 bits (414),  Expect = 0.0
 Identities = 453/472 (96%), Gaps = 1/472 (0%)
 Strand=Plus/Plus

Query  10   aagaagaagaagaaagaagaTGCAGTCGGCGAAGGAAAAGATCAGTGACATGGCCAGTAC  69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    AAGAAGAAGAAGAAAGAAGATGCAGTCGGCGAAGGAAAAGATCAGTGACATGGCCAGTAC  61

Query  70   GGCCAAGGAGAAACTCAACATCGGTGGCGCAAAGGCACAAGGTCATGCGGAGAAGACGAT  129
            |||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct  62   GGCCAAGGAGAAGCTCCACATCGGCGGCGCAAAGGCTCAAGGTCATGCAGAGAAGACGAT  121

Query  130  GGCAAGGACCAAAAAAGAGAAGAAGTTGGCCCAAGAGCGAGAGAAGTCTAAGGAGGCGCA  189
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  GGCGAGGACCAAAAAAGAGAAGAAGTTGGCCCAAGAGCGAGAGAAGTCTAAGGAGGCGCA  181

Query  190  GGCCAAAGCTGACCTCCATCAATCCAAGGCTGAGCATGCTGCGGACGCTCAGGTTCACGG  249
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  182  GGCCAAGGCTGACCTCCATCAATCCAAGGCTGAGCATGCTGCAGACGCTCAGGTTCACGG  241

Query  250  CCACCATCTTCCCGGTCACTCCACCTACCCTACCCGAGCCACCGGAGCTAATTACCCGCC  309
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  CCACCGTCTTCCCGGTCACTCCACCTACCCTACCCGAGCCACCGGAGCTAATTACCCGCC  301

Query  310  GGGACAGATCTAAAACTAGCTCTATAGCTATATTAAGATTAGCCGCCTTGTTTAACAATA  369
            |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  302  GGGACAAATCTAAAACTAGCTCTATAGCTATATTAAGATTAGCCGTCTTGTTTACCAATA  361

Query  370  TGATATGTACGTTTTTT-CTAATATAAGATCAGCAGTCATGAAATTTTCTTGGTTAGTTT  428
            | ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct  362  TAATATGTACGTTTTTTTCTAATATAAGATTAGCAGTCTTGAAATTTTCTTGGTTAGTTT  421

Query  429  CTTTTGATAGTTTATGCATAAACAATAATGTAATCTTGCAGAAATAAACGTA  480
            |||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct  422  CTTTTGCTATTTTATGCATAAAAAATAATGTAATCTTGCAGAAATAAACGTA  473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17666037707


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5